Wall clock time and date at job start Tue Mar 31 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 S 1.81405 * 109.46940 * 233.05547 * 3 2 1 5 5 C 1.76199 * 102.99793 * 180.02562 * 4 3 2 6 6 C 1.39027 * 120.18768 * 359.97021 * 5 4 3 7 7 C 1.37920 * 120.06129 * 180.02562 * 6 5 4 8 8 C 1.38666 * 120.45098 * 0.02562 * 7 6 5 9 9 C 1.37723 * 120.37515 * 359.97438 * 8 7 6 10 10 C 1.39807 * 119.92248 * 359.97438 * 9 8 7 11 11 C 1.47280 * 120.21779 * 180.02562 * 10 9 8 12 12 O 1.21648 * 119.99927 * 131.57057 * 11 10 9 13 13 N 1.34776 * 120.00319 * 311.57310 * 11 10 9 14 14 C 1.36911 * 119.99746 * 5.61887 * 13 11 10 15 15 H 1.08005 * 119.99375 * 315.21775 * 14 13 11 16 16 C 1.39011 * 120.00219 * 135.21798 * 14 13 11 17 17 N 1.31387 * 119.99793 * 348.05414 * 16 14 13 18 18 Si 1.86793 * 120.00109 * 168.05492 * 16 14 13 19 19 H 1.48501 * 109.47039 * 90.00001 * 18 16 14 20 20 H 1.48499 * 109.47461 * 210.00096 * 18 16 14 21 21 H 1.48508 * 109.47353 * 330.00264 * 18 16 14 22 22 C 1.46493 * 120.00326 * 185.61563 * 13 11 10 23 23 C 1.52996 * 109.47279 * 84.07413 * 22 13 11 24 24 C 1.50700 * 109.47136 * 180.02562 * 23 22 13 25 25 O 1.20823 * 120.00230 * 0.02562 * 24 23 22 26 26 O 1.34226 * 119.99952 * 179.97438 * 24 23 22 27 27 H 1.09003 * 109.46793 * 113.05869 * 3 2 1 28 28 H 1.08998 * 109.46998 * 353.05648 * 3 2 1 29 29 H 1.07997 * 119.96745 * 0.05188 * 6 5 4 30 30 H 1.08000 * 119.77547 * 180.29021 * 7 6 5 31 31 H 1.07999 * 119.81519 * 179.97438 * 8 7 6 32 32 H 1.07994 * 120.04162 * 180.02562 * 9 8 7 33 33 H 0.97003 * 120.00071 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.47296 * 204.07595 * 22 13 11 35 35 H 1.09004 * 109.46861 * 324.07365 * 22 13 11 36 36 H 1.09000 * 109.47143 * 299.99758 * 23 22 13 37 37 H 1.08992 * 109.47421 * 59.99829 * 23 22 13 38 38 H 0.96703 * 117.00348 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 16 3.2122 1.0289 1.3669 5 6 4.9631 0.9109 1.2077 6 6 5.5226 0.1460 0.1906 7 6 6.8934 0.0550 0.0687 8 6 7.7236 0.7226 0.9563 9 6 7.1890 1.4854 1.9707 10 6 5.8015 1.5894 2.1081 11 6 5.2228 2.4039 3.1901 12 8 4.3412 3.2050 2.9434 13 7 5.6698 2.2617 4.4536 14 6 6.7383 1.4461 4.7139 15 1 6.7948 0.4684 4.2585 16 6 7.7502 1.8763 5.5644 17 7 7.8083 3.1365 5.9315 18 14 9.0274 0.6629 6.1853 19 1 10.1747 0.6264 5.2431 20 1 9.5020 1.0868 7.5270 21 1 8.4209 -0.6895 6.2792 22 6 5.0127 2.9798 5.5483 23 6 3.7963 2.1826 6.0235 24 6 3.1199 2.9217 7.1493 25 8 3.5648 3.9779 7.5320 26 8 2.0226 2.4072 7.7262 27 1 2.9712 0.4033 -0.9456 28 1 2.9718 -1.0193 0.1242 29 1 4.8832 -0.3771 -0.5050 30 1 7.3231 -0.5367 -0.7260 31 1 8.7957 0.6439 0.8516 32 1 7.8406 2.0034 2.6587 33 1 8.5142 3.4367 6.5252 34 1 5.7127 3.1016 6.3749 35 1 4.6902 3.9602 5.1978 36 1 3.0962 2.0609 5.1970 37 1 4.1186 1.2022 6.3740 38 1 1.6235 2.9176 8.4440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:26 Heat of formation + Delta-G solvation = -62.021042 kcal Electronic energy + Delta-G solvation = -25883.327098 eV Core-core repulsion = 22010.696522 eV Total energy + Delta-G solvation = -3872.630575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.88629 -39.34424 -37.65690 -36.77570 -35.80961 -35.03427 -32.13448 -31.54168 -31.04696 -30.15733 -29.70313 -25.30910 -24.66458 -22.62403 -22.34171 -20.62177 -19.52037 -18.57764 -17.79931 -17.40414 -16.60795 -16.30745 -15.90885 -15.74553 -15.44957 -15.19669 -15.04050 -14.76490 -14.31188 -14.10630 -13.64007 -13.46290 -13.02262 -12.82352 -12.68963 -12.63963 -12.52115 -12.42145 -12.15026 -11.83090 -11.46513 -11.28362 -11.18533 -11.14222 -10.90634 -10.79693 -10.50053 -10.21254 -10.11963 -10.06170 -9.53882 -9.20053 -8.72321 -8.45338 -7.63423 -7.16550 -6.49816 -4.30879 1.12805 1.39069 1.63106 2.42662 2.56096 2.65585 2.96415 3.02800 3.13831 3.15940 3.36830 3.63802 3.64249 4.00046 4.18140 4.61068 4.77646 4.84512 4.95646 5.08161 5.27853 5.50215 5.57971 5.74297 5.77599 5.81918 6.00474 6.06455 6.27603 6.35069 6.49652 6.75894 6.80732 6.83393 6.88935 7.20571 7.24428 7.29849 7.34184 7.78577 8.20298 8.29515 8.89499 9.26273 9.71079 10.52149 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.005369 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.609340 B = 5213.553627 C = 7774.958788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.227 3.773 3 C -0.053 4.053 4 S -0.017 6.017 5 C -0.069 4.069 6 C -0.150 4.150 7 C -0.096 4.096 8 C -0.139 4.139 9 C -0.040 4.040 10 C -0.064 4.064 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.426 5.426 14 C -0.348 4.348 15 H 0.091 0.909 16 C 0.049 3.951 17 N -0.854 5.854 18 Si 0.913 3.087 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.133 3.867 23 C -0.127 4.127 24 C 0.483 3.517 25 O -0.514 6.514 26 O -0.524 6.524 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.273 0.727 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 -7.938 -6.639 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.092 4.092 3 C -0.203 4.203 4 S 0.225 5.775 5 C -0.183 4.183 6 C -0.174 4.174 7 C -0.116 4.116 8 C -0.160 4.160 9 C -0.060 4.060 10 C -0.073 4.073 11 C 0.298 3.702 12 O -0.461 6.461 13 N -0.143 5.143 14 C -0.476 4.476 15 H 0.109 0.891 16 C -0.159 4.159 17 N -0.489 5.489 18 Si 0.738 3.262 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.191 1.191 22 C 0.010 3.990 23 C -0.166 4.166 24 C 0.326 3.674 25 O -0.402 6.402 26 O -0.336 6.336 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.684 -6.750 -6.041 9.779 hybrid contribution 1.864 -1.005 0.034 2.118 sum -1.820 -7.755 -6.007 9.977 Atomic orbital electron populations 1.81244 1.12073 1.08054 1.07810 1.27776 0.93715 0.93779 0.93919 1.21173 0.86089 1.07039 1.06037 1.86842 0.97849 1.58050 1.34758 1.21798 0.96111 1.01346 0.99035 1.20867 0.95957 1.01929 0.98684 1.20999 0.92900 0.98942 0.98771 1.21146 0.99813 0.99127 0.95899 1.21625 0.93812 0.95161 0.95378 1.19638 0.93418 0.98405 0.95858 1.18287 0.84680 0.84054 0.83175 1.90704 1.34487 1.37919 1.83017 1.43187 1.27241 1.40866 1.02983 1.19397 0.98016 0.98413 1.31797 0.89140 1.25512 0.97487 0.95644 0.97278 1.69867 1.32686 1.13953 1.32356 0.86155 0.80671 0.80725 0.78616 1.19897 1.20654 1.19140 1.21120 0.91622 0.93517 0.92785 1.21883 0.99213 1.01253 0.94273 1.23736 0.77289 0.84012 0.82384 1.90707 1.63737 1.23188 1.62521 1.84591 1.42690 1.55166 1.51116 0.85222 0.85360 0.86126 0.86178 0.85916 0.83307 0.91603 0.87054 0.91465 0.88288 0.87744 0.74102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.05 18.54 42.15 0.78 -5.27 16 2 C 0.23 2.74 15.44 -20.76 -0.32 2.42 16 3 C -0.05 -0.51 4.82 34.37 0.17 -0.34 16 4 S -0.02 -0.27 19.91 -107.50 -2.14 -2.41 16 5 C -0.07 -1.11 6.15 -38.44 -0.24 -1.35 16 6 C -0.15 -1.87 9.36 -39.41 -0.37 -2.24 16 7 C -0.10 -1.16 10.03 -39.54 -0.40 -1.55 16 8 C -0.14 -1.94 10.02 -39.61 -0.40 -2.34 16 9 C -0.04 -0.70 8.02 -39.18 -0.31 -1.01 16 10 C -0.06 -1.25 5.13 -104.78 -0.54 -1.78 16 11 C 0.51 11.59 6.64 -12.59 -0.08 11.51 16 12 O -0.58 -14.29 15.33 5.23 0.08 -14.21 16 13 N -0.43 -9.82 2.48 -116.09 -0.29 -10.11 16 14 C -0.35 -7.89 6.55 -15.00 -0.10 -7.99 16 15 H 0.09 1.99 7.00 -52.48 -0.37 1.63 16 16 C 0.05 1.11 5.07 -17.46 -0.09 1.03 16 17 N -0.85 -21.16 11.51 55.50 0.64 -20.52 16 18 Si 0.91 17.84 29.57 -169.99 -5.03 12.81 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 C 0.13 3.05 4.17 -4.05 -0.02 3.03 16 23 C -0.13 -2.43 6.09 -27.88 -0.17 -2.60 16 24 C 0.48 8.73 8.33 36.01 0.30 9.03 16 25 O -0.51 -10.80 16.74 -18.75 -0.31 -11.12 16 26 O -0.52 -7.44 13.42 -39.25 -0.53 -7.97 16 27 H 0.13 0.90 7.75 -51.92 -0.40 0.50 16 28 H 0.13 0.87 7.75 -51.93 -0.40 0.47 16 29 H 0.12 1.05 5.89 -52.49 -0.31 0.74 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.15 2.89 6.84 -52.49 -0.36 2.53 16 33 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 34 H 0.11 2.76 5.79 -51.93 -0.30 2.46 16 35 H 0.07 1.67 7.49 -51.93 -0.39 1.28 16 36 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 37 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.40 3.77 9.10 45.56 0.41 4.18 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -31.05 352.98 -6.98 -38.03 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.94 Total: 9.63 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.56 Total: 5.80 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 1.13 Total: -35.89 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.76 Total: -33.30 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.14 Total: -2.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.05 -6.98 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.989 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds