Wall clock time and date at job start Tue Mar 31 2020 19:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 S 1.81405 * 109.46940 * 233.05547 * 3 2 1 5 5 C 1.76199 * 102.99793 * 180.02562 * 4 3 2 6 6 C 1.39027 * 120.18768 * 359.97021 * 5 4 3 7 7 C 1.37920 * 120.06129 * 180.02562 * 6 5 4 8 8 C 1.38666 * 120.45098 * 0.02562 * 7 6 5 9 9 C 1.37723 * 120.37515 * 359.97438 * 8 7 6 10 10 C 1.39807 * 119.92248 * 359.97438 * 9 8 7 11 11 C 1.47280 * 120.21779 * 180.02562 * 10 9 8 12 12 O 1.21648 * 119.99927 * 131.57057 * 11 10 9 13 13 N 1.34776 * 120.00319 * 311.57310 * 11 10 9 14 14 C 1.36911 * 119.99746 * 5.61887 * 13 11 10 15 15 H 1.08005 * 119.99375 * 315.21775 * 14 13 11 16 16 C 1.39011 * 120.00219 * 135.21798 * 14 13 11 17 17 N 1.31387 * 119.99793 * 348.05414 * 16 14 13 18 18 Si 1.86793 * 120.00109 * 168.05492 * 16 14 13 19 19 H 1.48501 * 109.47039 * 90.00001 * 18 16 14 20 20 H 1.48499 * 109.47461 * 210.00096 * 18 16 14 21 21 H 1.48508 * 109.47353 * 330.00264 * 18 16 14 22 22 C 1.46493 * 120.00326 * 185.61563 * 13 11 10 23 23 C 1.52996 * 109.47279 * 84.07413 * 22 13 11 24 24 C 1.50700 * 109.47136 * 180.02562 * 23 22 13 25 25 O 1.20823 * 120.00230 * 0.02562 * 24 23 22 26 26 O 1.34226 * 119.99952 * 179.97438 * 24 23 22 27 27 H 1.09003 * 109.46793 * 113.05869 * 3 2 1 28 28 H 1.08998 * 109.46998 * 353.05648 * 3 2 1 29 29 H 1.07997 * 119.96745 * 0.05188 * 6 5 4 30 30 H 1.08000 * 119.77547 * 180.29021 * 7 6 5 31 31 H 1.07999 * 119.81519 * 179.97438 * 8 7 6 32 32 H 1.07994 * 120.04162 * 180.02562 * 9 8 7 33 33 H 0.97003 * 120.00071 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.47296 * 204.07595 * 22 13 11 35 35 H 1.09004 * 109.46861 * 324.07365 * 22 13 11 36 36 H 1.09000 * 109.47143 * 299.99758 * 23 22 13 37 37 H 1.08992 * 109.47421 * 59.99829 * 23 22 13 38 38 H 0.96703 * 117.00348 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 16 3.2122 1.0289 1.3669 5 6 4.9631 0.9109 1.2077 6 6 5.5226 0.1460 0.1906 7 6 6.8934 0.0550 0.0687 8 6 7.7236 0.7226 0.9563 9 6 7.1890 1.4854 1.9707 10 6 5.8015 1.5894 2.1081 11 6 5.2228 2.4039 3.1901 12 8 4.3412 3.2050 2.9434 13 7 5.6698 2.2617 4.4536 14 6 6.7383 1.4461 4.7139 15 1 6.7948 0.4684 4.2585 16 6 7.7502 1.8763 5.5644 17 7 7.8083 3.1365 5.9315 18 14 9.0274 0.6629 6.1853 19 1 10.1747 0.6264 5.2431 20 1 9.5020 1.0868 7.5270 21 1 8.4209 -0.6895 6.2792 22 6 5.0127 2.9798 5.5483 23 6 3.7963 2.1826 6.0235 24 6 3.1199 2.9217 7.1493 25 8 3.5648 3.9779 7.5320 26 8 2.0226 2.4072 7.7262 27 1 2.9712 0.4033 -0.9456 28 1 2.9718 -1.0193 0.1242 29 1 4.8832 -0.3771 -0.5050 30 1 7.3231 -0.5367 -0.7260 31 1 8.7957 0.6439 0.8516 32 1 7.8406 2.0034 2.6587 33 1 8.5142 3.4367 6.5252 34 1 5.7127 3.1016 6.3749 35 1 4.6902 3.9602 5.1978 36 1 3.0962 2.0609 5.1970 37 1 4.1186 1.2022 6.3740 38 1 1.6235 2.9176 8.4440 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076359.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:25 Heat of formation + Delta-G solvation = -81.640136 kcal Electronic energy + Delta-G solvation = -25884.177846 eV Core-core repulsion = 22010.696522 eV Total energy + Delta-G solvation = -3873.481323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40011 -40.80539 -39.00863 -37.78102 -37.23372 -36.77539 -33.86684 -32.93882 -32.19324 -31.42145 -30.78399 -27.07718 -26.21650 -23.98063 -23.46592 -22.08479 -21.15655 -19.89602 -19.19516 -18.72379 -17.85762 -17.65766 -17.55283 -17.05829 -16.82444 -16.44131 -16.21448 -16.02020 -15.83431 -15.35950 -15.03494 -14.76653 -14.43708 -14.28271 -14.02847 -13.86163 -13.80603 -13.55119 -13.45238 -13.04968 -12.98517 -12.78005 -12.70945 -12.58230 -12.51602 -12.10794 -11.94635 -11.88175 -11.68119 -11.28044 -10.91313 -10.60621 -10.33272 -9.68072 -9.43645 -8.33025 -8.24992 -6.12132 0.09939 0.20102 0.51315 1.16513 1.37068 1.46999 1.52261 1.62561 1.65019 1.92714 2.07322 2.13307 2.39157 2.77018 2.88040 3.04738 3.16463 3.97171 4.06697 4.09684 4.15659 4.20260 4.35084 4.37158 4.47648 4.62150 4.67188 4.72254 4.84651 4.96519 5.19776 5.32749 5.40185 5.50174 5.57264 5.62447 5.73069 6.03450 6.11803 6.38479 6.41724 6.98013 7.12508 7.52276 7.97265 8.77403 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.005369 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.609340 B = 5213.553627 C = 7774.958788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.248 3.752 3 C -0.029 4.029 4 S -0.097 6.097 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.077 4.077 8 C -0.136 4.136 9 C -0.060 4.060 10 C -0.108 4.108 11 C 0.504 3.496 12 O -0.611 6.611 13 N -0.439 5.439 14 C -0.342 4.342 15 H 0.098 0.902 16 C 0.007 3.993 17 N -0.898 5.898 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.257 1.257 22 C 0.141 3.859 23 C -0.117 4.117 24 C 0.495 3.505 25 O -0.549 6.549 26 O -0.507 6.507 27 H 0.168 0.832 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.566 -11.656 -9.260 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.069 4.069 3 C -0.179 4.179 4 S 0.146 5.854 5 C -0.180 4.180 6 C -0.161 4.161 7 C -0.096 4.096 8 C -0.157 4.157 9 C -0.081 4.081 10 C -0.117 4.117 11 C 0.294 3.706 12 O -0.498 6.498 13 N -0.157 5.157 14 C -0.470 4.470 15 H 0.115 0.885 16 C -0.196 4.196 17 N -0.534 5.534 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.216 1.216 21 H -0.180 1.180 22 C 0.017 3.983 23 C -0.156 4.156 24 C 0.339 3.661 25 O -0.440 6.440 26 O -0.321 6.321 27 H 0.186 0.814 28 H 0.187 0.813 29 H 0.188 0.812 30 H 0.188 0.812 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -3.089 -10.493 -8.654 13.947 hybrid contribution 1.588 0.129 0.725 1.750 sum -1.501 -10.363 -7.929 13.135 Atomic orbital electron populations 1.81272 1.13805 1.09830 1.09401 1.28177 0.94145 0.92210 0.92417 1.21368 0.83886 1.08019 1.04618 1.87125 0.99028 1.60589 1.38702 1.21846 0.95389 1.01500 0.99218 1.21474 0.96997 1.00108 0.97489 1.21566 0.92452 0.97208 0.98388 1.21442 1.01560 0.97853 0.94813 1.21402 0.92824 0.96916 0.96948 1.19465 0.94588 1.00991 0.96632 1.18949 0.83972 0.83885 0.83793 1.90649 1.35983 1.39493 1.83691 1.43396 1.27782 1.41101 1.03386 1.19571 0.97782 0.98317 1.31315 0.88493 1.26286 0.99159 0.96837 0.97318 1.70012 1.33706 1.16026 1.33661 0.85167 0.78463 0.78840 0.77503 1.18916 1.21571 1.18028 1.20820 0.92520 0.92823 0.92146 1.21633 0.97826 1.01239 0.94868 1.23354 0.77753 0.83110 0.81917 1.90705 1.65021 1.24622 1.63620 1.84506 1.40894 1.54908 1.51747 0.81422 0.81256 0.81166 0.81237 0.83429 0.86642 0.91969 0.89276 0.95014 0.88367 0.86306 0.71168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.00 18.54 20.01 0.37 -12.63 16 2 C 0.25 5.36 15.44 89.44 1.38 6.74 16 3 C -0.03 -0.43 4.82 70.18 0.34 -0.09 16 4 S -0.10 -2.87 19.91 -56.49 -1.12 -3.99 16 5 C -0.07 -1.98 6.15 23.01 0.14 -1.84 16 6 C -0.14 -2.68 9.36 22.38 0.21 -2.47 16 7 C -0.08 -1.39 10.03 22.30 0.22 -1.17 16 8 C -0.14 -3.37 10.02 22.25 0.22 -3.15 16 9 C -0.06 -2.15 8.02 22.53 0.18 -1.96 16 10 C -0.11 -4.25 5.13 -19.97 -0.10 -4.35 16 11 C 0.50 24.24 6.64 86.62 0.58 24.81 16 12 O -0.61 -32.41 15.33 -4.18 -0.06 -32.47 16 13 N -0.44 -21.53 2.48 -639.42 -1.59 -23.12 16 14 C -0.34 -16.10 6.55 84.09 0.55 -15.55 16 15 H 0.10 4.35 7.00 -2.91 -0.02 4.33 16 16 C 0.01 0.35 5.07 84.94 0.43 0.78 16 17 N -0.90 -47.16 11.51 21.67 0.25 -46.91 16 18 Si 0.98 37.07 29.57 68.60 2.03 39.10 16 19 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.29 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 22 C 0.14 6.95 4.17 86.38 0.36 7.31 16 23 C -0.12 -4.66 6.09 29.85 0.18 -4.48 16 24 C 0.50 18.33 8.33 71.24 0.59 18.92 16 25 O -0.55 -24.11 16.74 21.97 0.37 -23.74 16 26 O -0.51 -13.88 13.42 -51.37 -0.69 -14.57 16 27 H 0.17 1.29 7.75 -2.39 -0.02 1.27 16 28 H 0.17 1.20 7.75 -2.39 -0.02 1.18 16 29 H 0.17 1.58 5.89 -2.91 -0.02 1.57 16 30 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.12 4.76 6.84 -2.91 -0.02 4.74 16 33 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 34 H 0.09 4.77 5.79 -2.39 -0.01 4.75 16 35 H 0.03 1.73 7.49 -2.38 -0.02 1.71 16 36 H 0.10 3.93 8.14 -2.39 -0.02 3.92 16 37 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 38 H 0.43 7.31 9.10 -74.06 -0.67 6.63 16 Total: -1.00 -76.50 352.98 5.30 -71.20 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.46 Total: 23.64 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 5.29 Total: 23.49 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -0.97 Total: -82.66 kcal Atomic # 8 Polarization: -70.39 SS G_CDS: -0.39 Total: -70.78 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -1.12 Total: -3.99 kcal Total: -76.50 5.30 -71.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076359.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.442 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds