Wall clock time and date at job start Tue Mar 31 2020 18:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48491 * 109.47184 * 275.17982 * 3 2 1 5 5 H 1.48503 * 109.47206 * 35.18272 * 3 2 1 6 6 H 1.48503 * 109.46800 * 155.17717 * 3 2 1 7 7 C 1.39115 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00139 * 335.81577 * 7 2 1 9 9 N 1.36753 * 119.99770 * 155.80931 * 7 2 1 10 10 C 1.46498 * 120.00097 * 320.02521 * 9 7 2 11 11 C 1.50703 * 109.46789 * 276.31705 * 10 9 7 12 12 O 1.20822 * 119.99935 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00098 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99778 * 140.01645 * 9 7 2 15 15 O 1.21655 * 120.00101 * 0.02562 * 14 9 7 16 16 C 1.47254 * 120.00067 * 180.02562 * 14 9 7 17 17 C 1.39872 * 121.45165 * 90.73710 * 16 14 9 18 18 O 1.35580 * 120.35982 * 359.49582 * 17 16 14 19 19 C 1.39895 * 119.27815 * 179.97438 * 17 16 14 20 20 N 1.30676 * 122.46579 * 359.52656 * 19 17 16 21 21 C 1.33529 * 122.58675 * 359.97438 * 20 19 17 22 22 C 1.40878 * 121.08025 * 180.02562 * 21 20 19 23 23 F 1.35108 * 120.15410 * 359.97438 * 22 21 20 24 24 C 1.36361 * 119.68475 * 179.69483 * 22 21 20 25 25 C 1.39205 * 121.06074 * 0.30381 * 24 22 21 26 26 C 1.36396 * 120.82622 * 359.95273 * 25 24 22 27 27 C 1.39874 * 119.63520 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47662 * 36.31915 * 10 9 7 30 30 H 1.09005 * 109.47127 * 156.32390 * 10 9 7 31 31 H 0.96702 * 117.00270 * 180.02562 * 13 11 10 32 32 H 0.96706 * 113.99954 * 270.50068 * 18 17 16 33 33 H 1.08001 * 118.76847 * 179.51054 * 19 17 16 34 34 H 1.08001 * 119.47238 * 180.27921 * 24 22 21 35 35 H 1.08005 * 119.58851 * 179.97438 * 25 24 22 36 36 H 1.08002 * 120.18605 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.3852 2.1097 -1.3943 5 1 1.5036 2.6186 0.8067 6 1 3.5952 1.4111 0.5878 7 6 2.0088 -1.2048 0.0005 8 1 1.5399 -2.0989 0.3841 9 7 3.2863 -1.2569 -0.4848 10 6 3.6443 -0.5014 -1.6877 11 6 3.2709 -1.2984 -2.9111 12 8 2.7580 -2.3857 -2.7904 13 8 3.5082 -0.8004 -4.1347 14 6 4.2159 -2.0033 0.1439 15 8 3.9186 -2.6310 1.1427 16 6 5.5917 -2.0591 -0.3783 17 6 6.5723 -1.1589 0.0511 18 8 6.2707 -0.1990 0.9598 19 6 7.8652 -1.2535 -0.4748 20 7 8.2009 -2.1618 -1.3523 21 6 7.3372 -3.0695 -1.8141 22 6 7.7336 -4.0353 -2.7600 23 9 9.0049 -4.0558 -3.2171 24 6 6.8297 -4.9528 -3.2076 25 6 5.5151 -4.9486 -2.7497 26 6 5.0955 -4.0249 -1.8381 27 6 5.9964 -3.0691 -1.3571 28 1 -0.4851 0.8400 0.0004 29 1 3.1075 0.4472 -1.6943 30 1 4.7177 -0.3115 -1.6915 31 1 3.2510 -1.3481 -4.8891 32 1 5.9568 0.6279 0.5689 33 1 8.6139 -0.5492 -0.1435 34 1 7.1385 -5.6946 -3.9294 35 1 4.8188 -5.6862 -3.1207 36 1 4.0731 -4.0308 -1.4902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:37 Heat of formation + Delta-G solvation = -123.907355 kcal Electronic energy + Delta-G solvation = -29742.945975 eV Core-core repulsion = 25301.418631 eV Total energy + Delta-G solvation = -4441.527343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.90128 -41.02424 -39.89055 -38.64417 -38.03285 -36.36169 -35.84248 -34.98118 -32.81004 -32.11748 -30.36049 -29.44683 -28.27337 -26.13228 -24.34350 -23.66216 -22.46451 -21.81091 -19.91516 -19.18871 -18.02664 -17.98379 -17.62490 -17.45829 -16.90725 -16.53044 -16.13999 -15.78278 -15.75007 -15.34399 -15.10210 -14.99864 -14.83117 -14.20117 -13.87152 -13.63339 -13.43513 -13.21322 -12.92902 -12.76548 -12.48824 -12.30550 -12.13774 -11.79678 -11.74644 -11.25631 -11.17011 -11.06736 -10.82333 -10.26623 -10.18870 -10.14624 -9.80335 -9.34485 -8.93435 -8.88609 -8.17729 -8.10905 -6.65166 -4.24279 0.10720 0.54915 1.61544 2.58063 2.66663 2.77036 2.89171 2.99586 3.06793 3.43689 3.66989 3.79279 3.86235 3.91262 3.99702 4.26037 4.55109 4.60462 4.68590 4.86525 4.94125 5.08828 5.11273 5.26343 5.35387 5.46693 5.58823 5.65133 5.82489 5.94475 5.97778 6.28798 6.35994 6.65390 6.79790 7.18932 7.45079 7.68219 7.93921 8.14036 8.26719 8.62311 8.97463 9.33005 10.45708 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.005482 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.368498 B = 5106.820932 C = 5803.818676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.066 3.934 3 Si 0.857 3.143 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.317 4.317 8 H 0.111 0.889 9 N -0.434 5.434 10 C 0.098 3.902 11 C 0.458 3.542 12 O -0.481 6.481 13 O -0.526 6.526 14 C 0.522 3.478 15 O -0.523 6.523 16 C -0.076 4.076 17 C 0.081 3.919 18 O -0.475 6.475 19 C 0.127 3.873 20 N -0.452 5.452 21 C 0.087 3.913 22 C 0.122 3.878 23 F -0.125 7.125 24 C -0.138 4.138 25 C -0.090 4.090 26 C -0.086 4.086 27 C -0.049 4.049 28 H 0.278 0.722 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.403 0.597 32 H 0.394 0.606 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.130 -0.380 -8.941 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.143 4.143 3 Si 0.683 3.317 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.444 4.444 8 H 0.129 0.871 9 N -0.155 5.155 10 C -0.028 4.028 11 C 0.297 3.703 12 O -0.365 6.365 13 O -0.338 6.338 14 C 0.309 3.691 15 O -0.401 6.401 16 C -0.088 4.088 17 C 0.032 3.968 18 O -0.284 6.284 19 C -0.049 4.049 20 N -0.161 5.161 21 C -0.033 4.033 22 C 0.102 3.898 23 F -0.103 7.103 24 C -0.159 4.159 25 C -0.108 4.108 26 C -0.105 4.105 27 C -0.052 4.052 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.261 0.739 32 H 0.252 0.748 33 H 0.189 0.811 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.734 -1.222 -8.003 15.090 hybrid contribution -0.687 1.087 -0.621 1.428 sum 12.047 -0.135 -8.624 14.816 Atomic orbital electron populations 1.69728 1.06318 1.28417 1.43069 1.25425 0.95157 0.98236 0.95476 0.87218 0.81949 0.84201 0.78316 1.19699 1.20117 1.18087 1.18958 0.85727 0.97415 1.42294 0.87131 1.43210 1.10228 1.43370 1.18708 1.21526 1.01626 0.96446 0.83210 1.24191 0.75716 0.86033 0.84341 1.90687 1.37991 1.21306 1.86530 1.84547 1.78873 1.53427 1.16916 1.17562 0.82397 0.84699 0.84415 1.90763 1.79426 1.44665 1.25274 1.22417 0.96707 0.95306 0.94353 1.19644 0.92567 0.92506 0.92064 1.84821 1.86993 1.25192 1.31405 1.23217 0.94328 0.95877 0.91480 1.67482 1.35184 1.02785 1.10600 1.18609 0.89933 0.96357 0.98434 1.17030 0.80037 0.96512 0.96218 1.91511 1.36055 1.95777 1.86965 1.20892 0.93545 0.99272 1.02170 1.20759 0.94784 0.98828 0.96413 1.21245 1.00405 0.92974 0.95881 1.19467 0.93349 0.96114 0.96220 0.91095 0.87100 0.88593 0.73900 0.74821 0.81146 0.83965 0.84209 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.74 13.95 55.50 0.77 -21.97 16 2 C 0.07 1.68 5.29 -17.44 -0.09 1.59 16 3 Si 0.86 17.83 25.31 -169.99 -4.30 13.53 16 4 H -0.27 -5.16 6.66 56.52 0.38 -4.78 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.32 -8.41 9.06 -15.03 -0.14 -8.55 16 8 H 0.11 3.36 7.95 -52.49 -0.42 2.94 16 9 N -0.43 -9.81 1.66 -117.39 -0.19 -10.00 16 10 C 0.10 1.83 4.96 -5.19 -0.03 1.80 16 11 C 0.46 8.30 8.36 36.01 0.30 8.60 16 12 O -0.48 -9.92 15.43 -18.75 -0.29 -10.21 16 13 O -0.53 -7.36 13.42 -39.25 -0.53 -7.88 16 14 C 0.52 11.85 5.68 -12.60 -0.07 11.78 16 15 O -0.52 -14.03 17.00 5.23 0.09 -13.94 16 16 C -0.08 -1.41 4.01 -102.36 -0.41 -1.82 16 17 C 0.08 1.28 6.42 -38.35 -0.25 1.03 16 18 O -0.47 -7.18 13.04 -18.44 -0.24 -7.42 16 19 C 0.13 1.73 11.06 -17.42 -0.19 1.54 16 20 N -0.45 -6.97 10.11 -10.88 -0.11 -7.08 16 21 C 0.09 1.40 6.62 -84.83 -0.56 0.83 16 22 C 0.12 1.74 7.31 -39.26 -0.29 1.46 16 23 F -0.12 -1.78 17.12 2.25 0.04 -1.75 16 24 C -0.14 -1.65 9.91 -39.90 -0.40 -2.04 16 25 C -0.09 -1.15 9.96 -39.89 -0.40 -1.55 16 26 C -0.09 -1.42 8.71 -39.63 -0.35 -1.77 16 27 C -0.05 -0.84 5.90 -104.72 -0.62 -1.46 16 28 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.11 2.10 3.48 -51.93 -0.18 1.92 16 30 H 0.10 1.49 6.38 -51.93 -0.33 1.16 16 31 H 0.40 3.80 9.10 45.56 0.41 4.22 16 32 H 0.39 4.33 9.06 45.56 0.41 4.74 16 33 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.15 2.80 6.54 -52.49 -0.34 2.46 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -33.84 326.19 -4.20 -38.04 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.87 Total: 12.33 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -3.48 Total: 11.44 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.47 Total: -39.05 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.97 Total: -39.46 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.30 Total: 13.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.84 -4.20 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.870 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds