Wall clock time and date at job start Tue Mar 31 2020 18:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48491 * 109.47184 * 275.17982 * 3 2 1 5 5 H 1.48503 * 109.47206 * 35.18272 * 3 2 1 6 6 H 1.48503 * 109.46800 * 155.17717 * 3 2 1 7 7 C 1.39115 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00139 * 335.81577 * 7 2 1 9 9 N 1.36753 * 119.99770 * 155.80931 * 7 2 1 10 10 C 1.46498 * 120.00097 * 320.02521 * 9 7 2 11 11 C 1.50703 * 109.46789 * 276.31705 * 10 9 7 12 12 O 1.20822 * 119.99935 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00098 * 180.02562 * 11 10 9 14 14 C 1.34780 * 119.99778 * 140.01645 * 9 7 2 15 15 O 1.21655 * 120.00101 * 0.02562 * 14 9 7 16 16 C 1.47254 * 120.00067 * 180.02562 * 14 9 7 17 17 C 1.39872 * 121.45165 * 90.73710 * 16 14 9 18 18 O 1.35580 * 120.35982 * 359.49582 * 17 16 14 19 19 C 1.39895 * 119.27815 * 179.97438 * 17 16 14 20 20 N 1.30676 * 122.46579 * 359.52656 * 19 17 16 21 21 C 1.33529 * 122.58675 * 359.97438 * 20 19 17 22 22 C 1.40878 * 121.08025 * 180.02562 * 21 20 19 23 23 F 1.35108 * 120.15410 * 359.97438 * 22 21 20 24 24 C 1.36361 * 119.68475 * 179.69483 * 22 21 20 25 25 C 1.39205 * 121.06074 * 0.30381 * 24 22 21 26 26 C 1.36396 * 120.82622 * 359.95273 * 25 24 22 27 27 C 1.39874 * 119.63520 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47662 * 36.31915 * 10 9 7 30 30 H 1.09005 * 109.47127 * 156.32390 * 10 9 7 31 31 H 0.96702 * 117.00270 * 180.02562 * 13 11 10 32 32 H 0.96706 * 113.99954 * 270.50068 * 18 17 16 33 33 H 1.08001 * 118.76847 * 179.51054 * 19 17 16 34 34 H 1.08001 * 119.47238 * 180.27921 * 24 22 21 35 35 H 1.08005 * 119.58851 * 179.97438 * 25 24 22 36 36 H 1.08002 * 120.18605 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.3852 2.1097 -1.3943 5 1 1.5036 2.6186 0.8067 6 1 3.5952 1.4111 0.5878 7 6 2.0088 -1.2048 0.0005 8 1 1.5399 -2.0989 0.3841 9 7 3.2863 -1.2569 -0.4848 10 6 3.6443 -0.5014 -1.6877 11 6 3.2709 -1.2984 -2.9111 12 8 2.7580 -2.3857 -2.7904 13 8 3.5082 -0.8004 -4.1347 14 6 4.2159 -2.0033 0.1439 15 8 3.9186 -2.6310 1.1427 16 6 5.5917 -2.0591 -0.3783 17 6 6.5723 -1.1589 0.0511 18 8 6.2707 -0.1990 0.9598 19 6 7.8652 -1.2535 -0.4748 20 7 8.2009 -2.1618 -1.3523 21 6 7.3372 -3.0695 -1.8141 22 6 7.7336 -4.0353 -2.7600 23 9 9.0049 -4.0558 -3.2171 24 6 6.8297 -4.9528 -3.2076 25 6 5.5151 -4.9486 -2.7497 26 6 5.0955 -4.0249 -1.8381 27 6 5.9964 -3.0691 -1.3571 28 1 -0.4851 0.8400 0.0004 29 1 3.1075 0.4472 -1.6943 30 1 4.7177 -0.3115 -1.6915 31 1 3.2510 -1.3481 -4.8891 32 1 5.9568 0.6279 0.5689 33 1 8.6139 -0.5492 -0.1435 34 1 7.1385 -5.6946 -3.9294 35 1 4.8188 -5.6862 -3.1207 36 1 4.0731 -4.0308 -1.4902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:36 Heat of formation + Delta-G solvation = -151.680962 kcal Electronic energy + Delta-G solvation = -29744.150329 eV Core-core repulsion = 25301.418631 eV Total energy + Delta-G solvation = -4442.731697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.98324 -42.32760 -41.27784 -40.18477 -39.27162 -37.49152 -37.31384 -36.67366 -34.47469 -33.64852 -31.47575 -30.62975 -29.86753 -27.80353 -25.72640 -24.81636 -23.79753 -23.23094 -21.35474 -20.38724 -19.46452 -19.27112 -19.23952 -18.80499 -18.18473 -18.04583 -17.51363 -17.19284 -16.90023 -16.67547 -16.56027 -16.24481 -15.98390 -15.67992 -15.33310 -15.02301 -14.69792 -14.51815 -14.39584 -14.32146 -14.11222 -13.77536 -13.38520 -12.92073 -12.89260 -12.85517 -12.60734 -12.41672 -12.29698 -11.97390 -11.74619 -11.54551 -11.14363 -11.03390 -10.55717 -10.05285 -9.98074 -9.30034 -8.60760 -6.28400 -1.08411 -0.55933 0.41910 1.10444 1.15950 1.25263 1.40174 1.45633 1.60254 1.92022 2.12089 2.33184 2.63028 2.65277 2.80495 2.85838 3.05704 3.39820 3.47886 3.59521 3.70325 3.73566 3.92652 4.02890 4.14033 4.26288 4.35972 4.50310 4.67842 4.81734 4.92894 5.14238 5.25476 5.34411 5.57814 5.60146 5.93922 6.26074 6.42613 6.57956 6.69875 6.94620 7.04674 7.50471 8.55487 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.005482 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.368498 B = 5106.820932 C = 5803.818676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.017 3.983 3 Si 0.925 3.075 4 H -0.230 1.230 5 H -0.278 1.278 6 H -0.230 1.230 7 C -0.338 4.338 8 H 0.042 0.958 9 N -0.436 5.436 10 C 0.092 3.908 11 C 0.463 3.537 12 O -0.516 6.516 13 O -0.507 6.507 14 C 0.527 3.473 15 O -0.586 6.586 16 C -0.115 4.115 17 C 0.101 3.899 18 O -0.485 6.485 19 C 0.139 3.861 20 N -0.454 5.454 21 C 0.074 3.926 22 C 0.118 3.882 23 F -0.123 7.123 24 C -0.119 4.119 25 C -0.068 4.068 26 C -0.118 4.118 27 C -0.054 4.054 28 H 0.285 0.715 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.426 0.574 32 H 0.415 0.585 33 H 0.217 0.783 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 1.425 -11.428 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.188 4.188 3 Si 0.744 3.256 4 H -0.155 1.155 5 H -0.204 1.204 6 H -0.153 1.153 7 C -0.465 4.465 8 H 0.060 0.940 9 N -0.156 5.156 10 C -0.032 4.032 11 C 0.303 3.697 12 O -0.403 6.403 13 O -0.320 6.320 14 C 0.316 3.684 15 O -0.469 6.469 16 C -0.127 4.127 17 C 0.053 3.947 18 O -0.298 6.298 19 C -0.037 4.037 20 N -0.162 5.162 21 C -0.046 4.046 22 C 0.097 3.903 23 F -0.101 7.101 24 C -0.139 4.139 25 C -0.086 4.086 26 C -0.137 4.137 27 C -0.057 4.057 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.288 0.712 32 H 0.276 0.724 33 H 0.233 0.767 34 H 0.202 0.798 35 H 0.185 0.815 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.466 0.604 -10.571 19.577 hybrid contribution -1.855 0.407 0.082 1.901 sum 14.611 1.011 -10.489 18.015 Atomic orbital electron populations 1.69848 1.08502 1.30001 1.44437 1.26298 0.95908 1.02401 0.94170 0.86167 0.81226 0.77534 0.80639 1.15502 1.20396 1.15275 1.18419 0.87685 0.96012 1.44432 0.94017 1.43098 1.08744 1.43650 1.20093 1.21642 1.03955 0.95722 0.81922 1.23930 0.75000 0.85312 0.85429 1.90701 1.39609 1.22832 1.87207 1.84460 1.78112 1.53197 1.16263 1.18111 0.83991 0.82873 0.83399 1.90701 1.81120 1.46918 1.28114 1.22067 0.94698 0.98466 0.97424 1.19829 0.92648 0.91621 0.90625 1.84766 1.87145 1.26102 1.31807 1.23771 0.93854 0.95810 0.90275 1.67581 1.34862 1.02859 1.10939 1.18769 0.89313 0.97310 0.99245 1.17179 0.80438 0.96599 0.96040 1.91519 1.35997 1.95764 1.86857 1.21241 0.92124 0.98905 1.01594 1.21070 0.95816 0.97523 0.94169 1.21051 0.98936 0.95295 0.98427 1.19426 0.94119 0.95961 0.96189 0.90524 0.86665 0.84810 0.71207 0.72381 0.76701 0.79806 0.81524 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.78 13.95 21.69 0.30 -50.47 16 2 C 0.02 0.90 5.29 84.98 0.45 1.35 16 3 Si 0.92 35.87 25.31 68.60 1.74 37.60 16 4 H -0.23 -7.52 6.66 99.48 0.66 -6.86 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -7.86 7.11 99.48 0.71 -7.15 16 7 C -0.34 -19.28 9.06 84.14 0.76 -18.52 16 8 H 0.04 2.87 7.95 -2.91 -0.02 2.85 16 9 N -0.44 -20.46 1.66 -643.53 -1.07 -21.53 16 10 C 0.09 3.35 4.96 85.63 0.42 3.77 16 11 C 0.46 16.46 8.36 71.24 0.60 17.06 16 12 O -0.52 -22.04 15.43 21.97 0.34 -21.70 16 13 O -0.51 -12.79 13.42 -51.40 -0.69 -13.48 16 14 C 0.53 25.13 5.68 86.61 0.49 25.62 16 15 O -0.59 -34.10 17.00 -4.21 -0.07 -34.18 16 16 C -0.11 -4.28 4.01 -18.40 -0.07 -4.35 16 17 C 0.10 2.99 6.42 23.07 0.15 3.14 16 18 O -0.49 -13.40 13.04 -88.89 -1.16 -14.56 16 19 C 0.14 3.27 11.06 85.27 0.94 4.22 16 20 N -0.45 -12.54 10.11 -188.34 -1.90 -14.45 16 21 C 0.07 2.19 6.62 40.38 0.27 2.46 16 22 C 0.12 2.99 7.31 22.48 0.16 3.15 16 23 F -0.12 -3.09 17.12 44.97 0.77 -2.32 16 24 C -0.12 -2.40 9.91 22.06 0.22 -2.18 16 25 C -0.07 -1.63 9.96 22.07 0.22 -1.41 16 26 C -0.12 -3.96 8.71 22.24 0.19 -3.77 16 27 C -0.05 -1.85 5.90 -19.93 -0.12 -1.96 16 28 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.12 4.06 3.48 -2.39 -0.01 4.05 16 30 H 0.13 3.79 6.38 -2.38 -0.02 3.78 16 31 H 0.43 6.82 9.10 -74.06 -0.67 6.15 16 32 H 0.41 7.50 9.06 -74.05 -0.67 6.83 16 33 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.11 4.50 6.54 -2.91 -0.02 4.48 16 Total: -1.00 -83.28 326.19 2.77 -80.51 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.18 Total: 25.98 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 4.69 Total: 28.59 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.67 Total: -86.45 kcal Atomic # 8 Polarization: -82.33 SS G_CDS: -1.58 Total: -83.91 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.77 Total: -2.32 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 1.74 Total: 37.60 kcal Total: -83.28 2.77 -80.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.171 kcal (2) G-P(sol) polarization free energy of solvation -83.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds