Wall clock time and date at job start Tue Mar 31 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46959 * 299.99834 * 3 2 1 6 6 H 1.48495 * 109.47488 * 59.99826 * 3 2 1 7 7 C 1.37879 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00419 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00019 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47175 * 299.99921 * 9 7 2 11 11 N 1.46503 * 109.47057 * 180.02562 * 9 7 2 12 12 C 1.34786 * 119.99841 * 155.00278 * 11 9 7 13 13 O 1.21511 * 119.99642 * 359.97438 * 12 11 9 14 14 C 1.48158 * 119.99938 * 180.02562 * 12 11 9 15 15 C 1.40022 * 120.87933 * 0.02562 * 14 12 11 16 16 C 1.37955 * 119.17259 * 179.97438 * 15 14 12 17 17 N 1.31913 * 120.99943 * 359.72442 * 16 15 14 18 18 C 1.32320 * 121.94747 * 0.57046 * 17 16 15 19 19 N 1.39025 * 119.64305 * 179.71037 * 18 17 16 20 20 C 1.39123 * 120.70967 * 359.42868 * 18 17 16 21 21 N 1.48017 * 120.53350 * 180.25558 * 20 18 17 22 22 O 1.21801 * 120.00256 * 90.00383 * 21 20 18 23 23 O 1.21799 * 119.99885 * 270.00054 * 21 20 18 24 24 C 1.53003 * 109.47460 * 60.00068 * 9 7 2 25 25 F 1.39898 * 109.47341 * 180.02562 * 24 9 7 26 26 F 1.39901 * 109.46666 * 300.00145 * 24 9 7 27 27 F 1.39898 * 109.46886 * 59.99591 * 24 9 7 28 28 H 0.97003 * 120.00048 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00248 * 334.99658 * 11 9 7 30 30 H 1.07995 * 120.41308 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.49474 * 180.02562 * 16 15 14 32 32 H 0.97005 * 119.99744 * 179.72633 * 19 18 17 33 33 H 0.96995 * 120.00117 * 359.44862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8124 0.4927 13 8 0.7172 -4.9701 0.9378 14 6 2.7997 -5.9384 0.4933 15 6 4.0949 -5.7765 -0.0136 16 6 4.9630 -6.8486 0.0047 17 7 4.5916 -8.0152 0.4958 18 6 3.3767 -8.2163 0.9801 19 7 3.0344 -9.4673 1.4805 20 6 2.4402 -7.1876 0.9992 21 7 1.0841 -7.4153 1.5470 22 8 0.8638 -7.2193 2.7287 23 8 0.1885 -7.7987 0.8159 24 6 0.3708 -2.5800 -1.2495 25 9 -0.3291 -3.7913 -1.2491 26 9 -0.5383 -1.5166 -1.2488 27 9 1.1747 -2.5056 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 3.0967 -3.4866 -0.3556 30 1 4.4106 -4.8242 -0.4131 31 1 5.9633 -6.7294 -0.3845 32 1 2.1465 -9.6193 1.8404 33 1 3.6820 -10.1893 1.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635287722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:23 Heat of formation + Delta-G solvation = -121.546183 kcal Electronic energy + Delta-G solvation = -29896.913981 eV Core-core repulsion = 24933.552247 eV Total energy + Delta-G solvation = -4963.361734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.47710 -46.13261 -45.73239 -42.16978 -40.63461 -39.17331 -36.20309 -35.54603 -35.05862 -33.40883 -32.71812 -30.42663 -28.72859 -26.76362 -24.90444 -24.58990 -23.01311 -21.90644 -20.48167 -19.47852 -18.70847 -18.52490 -18.48521 -17.25648 -16.96770 -16.78768 -16.61080 -16.53748 -15.98457 -15.36027 -15.15581 -15.12203 -14.94690 -14.52661 -14.15138 -13.47182 -13.16531 -13.04320 -12.66302 -12.52168 -12.40934 -12.12210 -11.94039 -11.59046 -11.41538 -11.31779 -11.20745 -11.00952 -10.96730 -10.81530 -10.61384 -10.52362 -10.41160 -9.83148 -9.80651 -8.88875 -8.73178 -8.58570 -6.35766 -4.61946 0.03379 0.54640 0.75751 1.45012 2.61167 2.71932 3.08361 3.11288 3.19415 3.22549 3.35752 3.93139 4.09139 4.22731 4.28247 4.43384 4.46637 4.70254 4.81140 5.14514 5.33229 5.66465 5.69464 5.72582 6.02967 6.27726 6.53527 6.67218 6.68778 6.78025 7.24198 7.37339 7.48947 7.81511 7.86662 8.23902 8.43476 9.06550 10.55823 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.004102 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.513955 B = 6824.355952 C = 7425.127782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.066 3.934 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.244 3.756 10 H 0.090 0.910 11 N -0.688 5.688 12 C 0.535 3.465 13 O -0.505 6.505 14 C 0.016 3.984 15 C -0.195 4.195 16 C 0.186 3.814 17 N -0.516 5.516 18 C 0.453 3.547 19 N -0.838 5.838 20 C -0.110 4.110 21 N 0.039 4.961 22 O -0.133 6.133 23 O -0.131 6.131 24 C 0.417 3.583 25 F -0.216 7.216 26 F -0.133 7.133 27 F -0.208 7.208 28 H 0.270 0.730 29 H 0.402 0.598 30 H 0.162 0.838 31 H 0.184 0.816 32 H 0.412 0.588 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -12.458 -0.161 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.144 4.144 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.139 3.861 10 H 0.108 0.892 11 N -0.338 5.338 12 C 0.317 3.683 13 O -0.381 6.381 14 C 0.004 3.996 15 C -0.218 4.218 16 C 0.028 3.972 17 N -0.235 5.235 18 C 0.213 3.787 19 N -0.381 5.381 20 C -0.200 4.200 21 N 0.570 4.430 22 O -0.356 6.356 23 O -0.355 6.355 24 C 0.361 3.639 25 F -0.197 7.197 26 F -0.115 7.115 27 F -0.190 7.190 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.179 0.821 31 H 0.200 0.800 32 H 0.243 0.757 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.981 -12.967 -0.128 16.992 hybrid contribution -0.322 1.198 -0.292 1.274 sum 10.659 -11.769 -0.421 15.884 Atomic orbital electron populations 1.70401 1.05921 1.27601 1.42916 1.25091 0.95193 1.00250 0.93826 0.86103 0.79702 0.81686 0.78032 1.19343 1.20450 1.20429 1.20852 0.93816 0.87735 1.56893 0.90182 1.19923 0.88565 0.85261 0.92341 0.89217 1.45947 1.17629 1.09808 1.60390 1.18060 0.86832 0.83023 0.80353 1.90924 1.19772 1.82387 1.44976 1.20301 0.95379 0.91575 0.92359 1.22214 0.92082 1.02660 1.04874 1.22816 0.99727 0.85647 0.89013 1.67406 1.13686 1.25922 1.16499 1.17644 0.87501 0.85065 0.88472 1.42337 1.19035 1.09332 1.67374 1.21245 0.86128 0.97051 1.15574 1.42897 1.01589 0.97940 1.00588 1.94544 1.87983 1.53346 0.99763 1.94557 1.37032 1.46391 1.57482 1.23046 0.80945 0.73037 0.86875 1.93097 1.81420 1.48288 1.96943 1.93418 1.68240 1.53640 1.96154 1.92994 1.74387 1.96188 1.55422 0.91907 0.76264 0.82071 0.79954 0.75720 0.75131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.30 9.50 55.43 0.53 -21.77 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.92 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.56 -13.48 8.46 -34.44 -0.29 -13.77 16 8 H 0.08 1.79 7.74 -52.49 -0.41 1.39 16 9 C 0.24 5.83 2.21 -69.08 -0.15 5.68 16 10 H 0.09 2.43 7.58 -51.93 -0.39 2.04 16 11 N -0.69 -13.31 4.95 -55.77 -0.28 -13.58 16 12 C 0.53 10.58 7.33 -12.18 -0.09 10.49 16 13 O -0.51 -12.10 13.29 -8.33 -0.11 -12.21 16 14 C 0.02 0.25 5.90 -104.69 -0.62 -0.37 16 15 C -0.19 -2.05 9.61 -39.02 -0.37 -2.43 16 16 C 0.19 1.59 11.16 -17.62 -0.20 1.39 16 17 N -0.52 -5.45 10.37 -12.48 -0.13 -5.57 16 18 C 0.45 5.53 7.74 -155.07 -1.20 4.32 16 19 N -0.84 -7.69 9.07 31.12 0.28 -7.41 16 20 C -0.11 -1.71 6.22 -79.15 -0.49 -2.20 16 21 N 0.04 0.71 1.73 34.35 0.06 0.76 16 22 O -0.13 -2.52 19.01 -32.28 -0.61 -3.13 16 23 O -0.13 -2.52 19.01 -32.25 -0.61 -3.13 16 24 C 0.42 10.46 2.81 37.16 0.10 10.56 16 25 F -0.22 -5.49 15.68 2.25 0.04 -5.45 16 26 F -0.13 -3.63 12.91 2.25 0.03 -3.60 16 27 F -0.21 -4.94 16.94 2.25 0.04 -4.90 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 29 H 0.40 6.27 6.68 -40.82 -0.27 5.99 16 30 H 0.16 1.27 6.53 -52.49 -0.34 0.93 16 31 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.41 3.77 8.06 -40.82 -0.33 3.44 16 33 H 0.42 2.67 8.95 -40.82 -0.37 2.30 16 LS Contribution 311.87 15.07 4.70 4.70 Total: -1.00 -32.73 311.87 -6.16 -38.89 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -1.67 Total: 6.88 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: -3.40 Total: 15.25 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.46 Total: -47.57 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -1.34 Total: -18.48 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.95 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.73 -6.16 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635287722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.656 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds