Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46959 * 299.99834 * 3 2 1 6 6 H 1.48495 * 109.47488 * 59.99826 * 3 2 1 7 7 C 1.37879 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00419 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00019 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47175 * 299.99921 * 9 7 2 11 11 N 1.46503 * 109.47057 * 180.02562 * 9 7 2 12 12 C 1.34786 * 119.99841 * 155.00278 * 11 9 7 13 13 O 1.21511 * 119.99642 * 359.97438 * 12 11 9 14 14 C 1.48158 * 119.99938 * 180.02562 * 12 11 9 15 15 C 1.40022 * 120.87933 * 0.02562 * 14 12 11 16 16 C 1.37955 * 119.17259 * 179.97438 * 15 14 12 17 17 N 1.31913 * 120.99943 * 359.72442 * 16 15 14 18 18 C 1.32320 * 121.94747 * 0.57046 * 17 16 15 19 19 N 1.39025 * 119.64305 * 179.71037 * 18 17 16 20 20 C 1.39123 * 120.70967 * 359.42868 * 18 17 16 21 21 N 1.48017 * 120.53350 * 180.25558 * 20 18 17 22 22 O 1.21801 * 120.00256 * 90.00383 * 21 20 18 23 23 O 1.21799 * 119.99885 * 270.00054 * 21 20 18 24 24 C 1.53003 * 109.47460 * 60.00068 * 9 7 2 25 25 F 1.39898 * 109.47341 * 180.02562 * 24 9 7 26 26 F 1.39901 * 109.46666 * 300.00145 * 24 9 7 27 27 F 1.39898 * 109.46886 * 59.99591 * 24 9 7 28 28 H 0.97003 * 120.00048 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00248 * 334.99658 * 11 9 7 30 30 H 1.07995 * 120.41308 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.49474 * 180.02562 * 16 15 14 32 32 H 0.97005 * 119.99744 * 179.72633 * 19 18 17 33 33 H 0.96995 * 120.00117 * 359.44862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8124 0.4927 13 8 0.7172 -4.9701 0.9378 14 6 2.7997 -5.9384 0.4933 15 6 4.0949 -5.7765 -0.0136 16 6 4.9630 -6.8486 0.0047 17 7 4.5916 -8.0152 0.4958 18 6 3.3767 -8.2163 0.9801 19 7 3.0344 -9.4673 1.4805 20 6 2.4402 -7.1876 0.9992 21 7 1.0841 -7.4153 1.5470 22 8 0.8638 -7.2193 2.7287 23 8 0.1885 -7.7987 0.8159 24 6 0.3708 -2.5800 -1.2495 25 9 -0.3291 -3.7913 -1.2491 26 9 -0.5383 -1.5166 -1.2488 27 9 1.1747 -2.5056 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 3.0967 -3.4866 -0.3556 30 1 4.4106 -4.8242 -0.4131 31 1 5.9633 -6.7294 -0.3845 32 1 2.1465 -9.6193 1.8404 33 1 3.6820 -10.1893 1.4662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635287722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -144.880311 kcal Electronic energy + Delta-G solvation = -29897.925825 eV Core-core repulsion = 24933.552247 eV Total energy + Delta-G solvation = -4964.373578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.50524 -48.14340 -47.80516 -43.41387 -41.76623 -40.60835 -37.59316 -36.84326 -36.40079 -34.76091 -34.24222 -31.51263 -30.34444 -27.97754 -26.69535 -25.96389 -24.09081 -23.55928 -22.07608 -20.71027 -20.02606 -19.88859 -19.54717 -19.01005 -18.86428 -18.73443 -17.99267 -17.71125 -17.50922 -16.94670 -16.41087 -16.23391 -16.13886 -15.75374 -15.51292 -15.12412 -15.04387 -14.63356 -14.53733 -14.37457 -14.22028 -14.07181 -13.92895 -13.16846 -12.85182 -12.83320 -12.68942 -12.48232 -12.40866 -12.27431 -12.25928 -11.75503 -11.62975 -11.61614 -11.10117 -10.75422 -10.36639 -9.56791 -8.25325 -6.58017 -1.02963 -0.66876 -0.33849 0.26931 1.42107 1.46756 1.48870 1.56820 1.63417 1.92223 2.27553 2.35298 2.43785 2.89838 2.96410 3.10863 3.28224 3.61407 3.66686 3.75316 3.79996 4.04061 4.20279 4.55820 4.74844 4.96005 5.08306 5.14185 5.41585 5.52431 5.58679 6.00217 6.27258 6.36066 6.46794 6.57087 6.86375 7.15485 8.67829 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.004102 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.513955 B = 6824.355952 C = 7425.127782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.987 3.013 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.103 0.897 9 C 0.251 3.749 10 H 0.048 0.952 11 N -0.677 5.677 12 C 0.531 3.469 13 O -0.559 6.559 14 C -0.011 4.011 15 C -0.176 4.176 16 C 0.214 3.786 17 N -0.508 5.508 18 C 0.456 3.544 19 N -0.824 5.824 20 C -0.144 4.144 21 N 0.046 4.954 22 O -0.155 6.155 23 O -0.164 6.164 24 C 0.413 3.587 25 F -0.222 7.222 26 F -0.148 7.148 27 F -0.198 7.198 28 H 0.269 0.731 29 H 0.421 0.579 30 H 0.193 0.807 31 H 0.243 0.757 32 H 0.412 0.588 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.218 -12.639 -1.121 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.192 4.192 3 Si 0.811 3.189 4 H -0.171 1.171 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.596 4.596 8 H 0.121 0.879 9 C 0.145 3.855 10 H 0.065 0.935 11 N -0.328 5.328 12 C 0.316 3.684 13 O -0.438 6.438 14 C -0.023 4.023 15 C -0.199 4.199 16 C 0.054 3.946 17 N -0.227 5.227 18 C 0.216 3.784 19 N -0.367 5.367 20 C -0.235 4.235 21 N 0.572 4.428 22 O -0.378 6.378 23 O -0.383 6.383 24 C 0.357 3.643 25 F -0.204 7.204 26 F -0.130 7.130 27 F -0.180 7.180 28 H 0.079 0.921 29 H 0.261 0.739 30 H 0.210 0.790 31 H 0.259 0.741 32 H 0.242 0.758 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 15.485 -13.224 -1.094 20.392 hybrid contribution -1.590 1.174 -0.030 1.977 sum 13.894 -12.049 -1.124 18.426 Atomic orbital electron populations 1.70543 1.07742 1.28328 1.44307 1.26059 0.95872 1.03954 0.93278 0.85044 0.79395 0.77031 0.77468 1.17120 1.20805 1.20665 1.21249 0.94855 0.87547 1.55989 0.87915 1.19483 0.88805 0.87131 0.90091 0.93477 1.45670 1.17742 1.08858 1.60562 1.18727 0.87006 0.83842 0.78809 1.90893 1.22446 1.83338 1.47074 1.20037 0.96552 0.89841 0.95867 1.22667 0.89725 1.04747 1.02723 1.23828 1.01172 0.83731 0.85859 1.67657 1.12067 1.26839 1.16134 1.17789 0.87308 0.85067 0.88236 1.42371 1.19401 1.08912 1.66051 1.21402 0.84753 0.98629 1.18697 1.43293 1.02693 0.96695 1.00118 1.94504 1.88823 1.53728 1.00723 1.94523 1.38853 1.47558 1.57409 1.23279 0.80930 0.72398 0.87699 1.93084 1.81684 1.48609 1.97018 1.93389 1.68909 1.54376 1.96291 1.92995 1.73955 1.96123 1.54948 0.92072 0.73917 0.78986 0.74072 0.75798 0.73370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.73 9.50 21.45 0.20 -47.53 16 2 C 0.01 0.69 5.20 84.66 0.44 1.13 16 3 Si 0.99 38.67 29.54 68.60 2.03 40.70 16 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.56 -26.68 8.46 25.60 0.22 -26.46 16 8 H 0.10 4.31 7.74 -2.91 -0.02 4.29 16 9 C 0.25 12.25 2.21 44.24 0.10 12.35 16 10 H 0.05 2.71 7.58 -2.38 -0.02 2.69 16 11 N -0.68 -25.87 4.95 -448.66 -2.22 -28.09 16 12 C 0.53 21.32 7.33 86.88 0.64 21.96 16 13 O -0.56 -28.26 13.29 9.34 0.12 -28.14 16 14 C -0.01 -0.33 5.90 -19.91 -0.12 -0.45 16 15 C -0.18 -2.95 9.61 22.64 0.22 -2.73 16 16 C 0.21 2.39 11.16 84.61 0.94 3.34 16 17 N -0.51 -8.51 10.37 -193.40 -2.00 -10.51 16 18 C 0.46 10.18 7.74 133.08 1.03 11.21 16 19 N -0.82 -13.89 9.07 -55.47 -0.50 -14.39 16 20 C -0.14 -4.43 6.22 36.89 0.23 -4.20 16 21 N 0.05 1.72 1.73 -45.24 -0.08 1.64 16 22 O -0.16 -6.23 19.01 21.58 0.41 -5.82 16 23 O -0.16 -6.68 19.01 21.55 0.41 -6.27 16 24 C 0.41 21.16 2.81 71.98 0.20 21.36 16 25 F -0.22 -11.73 15.68 44.97 0.70 -11.03 16 26 F -0.15 -8.34 12.91 44.97 0.58 -7.76 16 27 F -0.20 -9.33 16.94 44.97 0.76 -8.56 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.42 12.12 6.68 -92.71 -0.62 11.50 16 30 H 0.19 1.96 6.53 -2.91 -0.02 1.94 16 31 H 0.24 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.41 7.40 8.06 -92.70 -0.75 6.65 16 33 H 0.43 4.51 8.95 -92.71 -0.83 3.68 16 Total: -1.00 -76.67 311.87 3.39 -73.28 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -0.93 Total: 14.97 kcal Atomic # 6 Polarization: 33.62 SS G_CDS: 3.90 Total: 37.51 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.60 Total: -98.89 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: 0.94 Total: -40.22 kcal Atomic # 9 Polarization: -29.40 SS G_CDS: 2.05 Total: -27.35 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -76.67 3.39 -73.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635287722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.600 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds