Wall clock time and date at job start Tue Mar 31 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00176 * 2 1 4 4 H 1.48488 * 109.47269 * 264.81386 * 3 2 1 5 5 H 1.48503 * 109.46807 * 24.81260 * 3 2 1 6 6 H 1.48497 * 109.47289 * 144.80754 * 3 2 1 7 7 C 1.37880 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99973 * 4.87210 * 7 2 1 9 9 C 1.50698 * 120.00037 * 184.87850 * 7 2 1 10 10 H 1.08999 * 109.47452 * 334.94153 * 9 7 2 11 11 N 1.46507 * 109.47465 * 94.94025 * 9 7 2 12 12 C 1.34770 * 120.00034 * 204.99802 * 11 9 7 13 13 O 1.21508 * 120.00481 * 0.02562 * 12 11 9 14 14 C 1.48168 * 119.99809 * 179.97438 * 12 11 9 15 15 C 1.40012 * 120.87974 * 359.97438 * 14 12 11 16 16 C 1.37954 * 119.17579 * 180.02562 * 15 14 12 17 17 N 1.31916 * 120.99748 * 0.02562 * 16 15 14 18 18 C 1.32317 * 121.94929 * 359.97438 * 17 16 15 19 19 N 1.39027 * 119.64745 * 179.97438 * 18 17 16 20 20 C 1.39124 * 120.70747 * 0.02562 * 18 17 16 21 21 N 1.48022 * 120.53040 * 179.72282 * 20 18 17 22 22 O 1.21806 * 120.00045 * 89.99884 * 21 20 18 23 23 O 1.21798 * 120.00094 * 269.99618 * 21 20 18 24 24 C 1.53005 * 109.47147 * 214.93915 * 9 7 2 25 25 F 1.39900 * 109.46899 * 294.93756 * 24 9 7 26 26 F 1.39902 * 109.46983 * 54.93742 * 24 9 7 27 27 F 1.39896 * 109.47125 * 174.93662 * 24 9 7 28 28 H 0.96999 * 120.00140 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99134 * 24.99822 * 11 9 7 30 30 H 1.07999 * 120.41422 * 0.02562 * 15 14 12 31 31 H 1.08001 * 119.50013 * 179.97438 * 16 15 14 32 32 H 0.96997 * 120.00466 * 180.02562 * 19 18 17 33 33 H 0.97004 * 119.99548 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9831 -1.3942 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8069 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0804 9 6 3.5074 -1.1964 0.1105 10 1 3.9004 -0.2482 -0.2564 11 7 3.8933 -1.3752 1.5124 12 6 5.0873 -0.9244 1.9454 13 8 5.8436 -0.3693 1.1732 14 6 5.4774 -1.1047 3.3634 15 6 4.6197 -1.7401 4.2694 16 6 5.0182 -1.8887 5.5817 17 7 6.1900 -1.4417 5.9907 18 6 7.0330 -0.8352 5.1707 19 7 8.2557 -0.3823 5.6531 20 6 6.7084 -0.6449 3.8314 21 7 7.6518 0.0396 2.9190 22 8 8.4819 -0.6064 2.3047 23 8 7.5981 1.2487 2.7824 24 6 4.0788 -2.3432 -0.7259 25 9 3.6669 -3.5656 -0.1843 26 9 3.6156 -2.2364 -2.0417 27 9 5.4761 -2.2760 -0.7165 28 1 -0.4850 0.8400 -0.0004 29 1 3.2894 -1.8180 2.1290 30 1 3.6580 -2.1094 3.9449 31 1 4.3605 -2.3777 6.2851 32 1 8.8774 0.0633 5.0567 33 1 8.4871 -0.5120 6.5862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635287723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:27 Heat of formation + Delta-G solvation = -145.723790 kcal Electronic energy + Delta-G solvation = -29968.615662 eV Core-core repulsion = 25004.205509 eV Total energy + Delta-G solvation = -4964.410154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.17950 -46.70431 -46.65240 -42.18183 -40.63387 -39.20897 -36.22934 -35.53649 -35.18154 -33.39715 -32.74833 -30.53107 -29.28783 -26.80334 -25.12212 -24.78224 -23.01362 -21.78747 -20.56925 -19.49025 -18.84498 -18.55549 -18.50864 -17.80187 -17.65229 -16.95678 -16.77829 -16.56600 -16.44373 -15.64083 -15.18508 -15.16472 -14.98352 -14.32739 -14.22223 -13.71407 -13.56325 -13.32450 -13.13789 -13.06298 -12.86565 -12.80870 -12.69212 -12.00963 -11.56803 -11.43935 -11.29238 -11.21873 -10.91499 -10.84545 -10.53074 -10.51097 -10.27501 -10.01714 -9.87818 -9.13415 -8.79394 -8.70229 -6.69608 -4.86968 0.04427 0.56553 0.73810 1.44010 2.61182 2.70815 2.96239 3.10367 3.13977 3.21566 3.33305 3.77674 3.93863 3.97206 4.22153 4.26892 4.48227 4.69000 4.72265 4.99916 5.03799 5.14620 5.30430 5.42103 5.72920 6.07484 6.27649 6.52431 6.66991 6.69582 6.73667 7.38476 7.59315 7.79520 7.90378 8.28499 8.36979 8.85211 10.37839 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.004911 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.459784 B = 5700.108853 C = 5999.064857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.103 3.897 3 Si 0.864 3.136 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.097 0.903 9 C 0.200 3.800 10 H 0.094 0.906 11 N -0.689 5.689 12 C 0.528 3.472 13 O -0.516 6.516 14 C 0.013 3.987 15 C -0.193 4.193 16 C 0.186 3.814 17 N -0.516 5.516 18 C 0.452 3.548 19 N -0.838 5.838 20 C -0.111 4.111 21 N 0.040 4.960 22 O -0.132 6.132 23 O -0.136 6.136 24 C 0.439 3.561 25 F -0.191 7.191 26 F -0.178 7.178 27 F -0.193 7.193 28 H 0.278 0.722 29 H 0.402 0.598 30 H 0.164 0.836 31 H 0.184 0.816 32 H 0.412 0.588 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 -3.030 12.375 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.109 4.109 3 Si 0.689 3.311 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.575 4.575 8 H 0.115 0.885 9 C 0.098 3.902 10 H 0.112 0.888 11 N -0.342 5.342 12 C 0.312 3.688 13 O -0.392 6.392 14 C 0.000 4.000 15 C -0.216 4.216 16 C 0.028 3.972 17 N -0.235 5.235 18 C 0.212 3.788 19 N -0.381 5.381 20 C -0.201 4.201 21 N 0.571 4.429 22 O -0.356 6.356 23 O -0.358 6.358 24 C 0.383 3.617 25 F -0.173 7.173 26 F -0.159 7.159 27 F -0.175 7.175 28 H 0.089 0.911 29 H 0.240 0.760 30 H 0.181 0.819 31 H 0.201 0.799 32 H 0.242 0.758 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.713 -3.000 13.085 16.005 hybrid contribution 0.406 0.807 -0.755 1.177 sum 9.119 -2.193 12.330 15.492 Atomic orbital electron populations 1.69836 1.06401 1.28737 1.43255 1.25001 0.94846 0.99320 0.91692 0.86979 0.80809 0.82781 0.80548 1.18635 1.20168 1.17941 1.20712 0.85899 0.96634 1.54208 0.88491 1.20166 0.98225 0.92734 0.79096 0.88799 1.47605 1.16000 1.57514 1.13060 1.18428 0.83704 0.80883 0.85830 1.90885 1.51107 1.41723 1.55493 1.20420 0.90525 0.92679 0.96331 1.22252 1.02024 1.03571 0.93792 1.22835 0.90136 0.90164 0.94066 1.67406 1.05294 1.15608 1.35184 1.17649 0.87708 0.88587 0.84821 1.42328 1.15657 1.64607 1.15547 1.21259 0.94949 1.13303 0.90631 1.42905 0.99878 1.00769 0.99380 1.94543 1.30496 1.66515 1.44016 1.94545 1.76295 0.96379 1.68625 1.21566 0.75049 0.84943 0.80103 1.93073 1.90274 1.48034 1.85922 1.93123 1.88682 1.96144 1.37989 1.93172 1.31275 1.96499 1.96533 0.91141 0.75967 0.81867 0.79899 0.75778 0.75143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.28 13.96 55.43 0.77 -21.51 16 2 C 0.10 2.58 5.47 -17.82 -0.10 2.48 16 3 Si 0.86 19.68 26.99 -169.99 -4.59 15.09 16 4 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -6.00 6.82 56.52 0.39 -5.61 16 7 C -0.54 -13.02 8.52 -34.44 -0.29 -13.31 16 8 H 0.10 2.52 8.00 -52.49 -0.42 2.10 16 9 C 0.20 4.46 1.71 -69.08 -0.12 4.34 16 10 H 0.09 2.26 4.73 -51.93 -0.25 2.01 16 11 N -0.69 -13.26 4.87 -55.77 -0.27 -13.53 16 12 C 0.53 10.45 7.45 -12.18 -0.09 10.36 16 13 O -0.52 -12.08 13.29 -8.33 -0.11 -12.19 16 14 C 0.01 0.20 5.90 -104.69 -0.62 -0.42 16 15 C -0.19 -2.15 9.61 -39.02 -0.37 -2.52 16 16 C 0.19 1.69 11.16 -17.62 -0.20 1.49 16 17 N -0.52 -5.65 10.36 -12.48 -0.13 -5.78 16 18 C 0.45 5.66 7.74 -155.07 -1.20 4.46 16 19 N -0.84 -7.90 9.07 31.12 0.28 -7.61 16 20 C -0.11 -1.76 6.22 -79.15 -0.49 -2.25 16 21 N 0.04 0.73 1.73 34.35 0.06 0.79 16 22 O -0.13 -2.50 19.02 -32.24 -0.61 -3.11 16 23 O -0.14 -2.60 19.01 -32.29 -0.61 -3.22 16 24 C 0.44 9.58 2.83 37.16 0.11 9.69 16 25 F -0.19 -3.94 16.93 2.25 0.04 -3.90 16 26 F -0.18 -3.97 16.89 2.25 0.04 -3.93 16 27 F -0.19 -4.30 15.83 2.25 0.04 -4.27 16 28 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.40 6.50 6.73 -40.82 -0.27 6.23 16 30 H 0.16 1.42 6.53 -52.49 -0.34 1.08 16 31 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.41 3.84 8.06 -40.82 -0.33 3.51 16 33 H 0.42 2.77 8.95 -40.82 -0.37 2.40 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -31.53 314.98 -5.28 -36.81 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -1.55 Total: 7.30 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: -3.38 Total: 14.31 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.71 Total: -47.65 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.34 Total: -18.52 kcal Atomic # 9 Polarization: -12.21 SS G_CDS: 0.11 Total: -12.10 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.59 Total: 15.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.53 -5.28 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635287723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.909 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds