Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00176 * 2 1 4 4 H 1.48488 * 109.47269 * 264.81386 * 3 2 1 5 5 H 1.48503 * 109.46807 * 24.81260 * 3 2 1 6 6 H 1.48497 * 109.47289 * 144.80754 * 3 2 1 7 7 C 1.37880 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99973 * 4.87210 * 7 2 1 9 9 C 1.50698 * 120.00037 * 184.87850 * 7 2 1 10 10 H 1.08999 * 109.47452 * 334.94153 * 9 7 2 11 11 N 1.46507 * 109.47465 * 94.94025 * 9 7 2 12 12 C 1.34770 * 120.00034 * 204.99802 * 11 9 7 13 13 O 1.21508 * 120.00481 * 0.02562 * 12 11 9 14 14 C 1.48168 * 119.99809 * 179.97438 * 12 11 9 15 15 C 1.40012 * 120.87974 * 359.97438 * 14 12 11 16 16 C 1.37954 * 119.17579 * 180.02562 * 15 14 12 17 17 N 1.31916 * 120.99748 * 0.02562 * 16 15 14 18 18 C 1.32317 * 121.94929 * 359.97438 * 17 16 15 19 19 N 1.39027 * 119.64745 * 179.97438 * 18 17 16 20 20 C 1.39124 * 120.70747 * 0.02562 * 18 17 16 21 21 N 1.48022 * 120.53040 * 179.72282 * 20 18 17 22 22 O 1.21806 * 120.00045 * 89.99884 * 21 20 18 23 23 O 1.21798 * 120.00094 * 269.99618 * 21 20 18 24 24 C 1.53005 * 109.47147 * 214.93915 * 9 7 2 25 25 F 1.39900 * 109.46899 * 294.93756 * 24 9 7 26 26 F 1.39902 * 109.46983 * 54.93742 * 24 9 7 27 27 F 1.39896 * 109.47125 * 174.93662 * 24 9 7 28 28 H 0.96999 * 120.00140 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99134 * 24.99822 * 11 9 7 30 30 H 1.07999 * 120.41422 * 0.02562 * 15 14 12 31 31 H 1.08001 * 119.50013 * 179.97438 * 16 15 14 32 32 H 0.96997 * 120.00466 * 180.02562 * 19 18 17 33 33 H 0.97004 * 119.99548 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6062 1.9831 -1.3942 5 1 1.3960 2.6818 0.5876 6 1 3.4875 1.4743 0.8069 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0804 9 6 3.5074 -1.1964 0.1105 10 1 3.9004 -0.2482 -0.2564 11 7 3.8933 -1.3752 1.5124 12 6 5.0873 -0.9244 1.9454 13 8 5.8436 -0.3693 1.1732 14 6 5.4774 -1.1047 3.3634 15 6 4.6197 -1.7401 4.2694 16 6 5.0182 -1.8887 5.5817 17 7 6.1900 -1.4417 5.9907 18 6 7.0330 -0.8352 5.1707 19 7 8.2557 -0.3823 5.6531 20 6 6.7084 -0.6449 3.8314 21 7 7.6518 0.0396 2.9190 22 8 8.4819 -0.6064 2.3047 23 8 7.5981 1.2487 2.7824 24 6 4.0788 -2.3432 -0.7259 25 9 3.6669 -3.5656 -0.1843 26 9 3.6156 -2.2364 -2.0417 27 9 5.4761 -2.2760 -0.7165 28 1 -0.4850 0.8400 -0.0004 29 1 3.2894 -1.8180 2.1290 30 1 3.6580 -2.1094 3.9449 31 1 4.3605 -2.3777 6.2851 32 1 8.8774 0.0633 5.0567 33 1 8.4871 -0.5120 6.5862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635287723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = -168.070922 kcal Electronic energy + Delta-G solvation = -29969.584707 eV Core-core repulsion = 25004.205509 eV Total energy + Delta-G solvation = -4965.379198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.95983 -48.47628 -48.43670 -43.43362 -41.78311 -40.64388 -37.61203 -36.93672 -36.42296 -34.77057 -34.31644 -31.76755 -30.71811 -28.00417 -26.98539 -25.99235 -24.09320 -23.38268 -22.11219 -20.78159 -20.31041 -19.91494 -19.62950 -19.36825 -19.27387 -18.61985 -18.54180 -17.84971 -17.57679 -17.20551 -16.40979 -16.24808 -16.07883 -15.73633 -15.55330 -15.40765 -15.34245 -14.98142 -14.89488 -14.64343 -14.59449 -14.57390 -14.11868 -13.83654 -13.14895 -12.85747 -12.73758 -12.49666 -12.42094 -12.29158 -12.09943 -11.95064 -11.85145 -11.62654 -11.16129 -11.04523 -10.45420 -9.58235 -8.63355 -6.82162 -1.04482 -0.67666 -0.35324 0.24657 1.17527 1.27474 1.36118 1.39129 1.51706 1.87616 2.00040 2.08963 2.28845 2.73064 2.93319 3.07202 3.23491 3.24433 3.28252 3.51324 3.61831 3.78141 4.14644 4.28938 4.54947 4.81753 4.94571 5.08371 5.12828 5.51383 5.78264 5.98559 6.26662 6.35610 6.37867 6.55806 6.81880 6.92062 8.48171 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.004911 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.459784 B = 5700.108853 C = 5999.064857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.207 3.793 10 H 0.076 0.924 11 N -0.683 5.683 12 C 0.526 3.474 13 O -0.560 6.560 14 C -0.015 4.015 15 C -0.178 4.178 16 C 0.213 3.787 17 N -0.508 5.508 18 C 0.456 3.544 19 N -0.824 5.824 20 C -0.144 4.144 21 N 0.046 4.954 22 O -0.152 6.152 23 O -0.165 6.165 24 C 0.441 3.559 25 F -0.182 7.182 26 F -0.182 7.182 27 F -0.196 7.196 28 H 0.283 0.717 29 H 0.419 0.581 30 H 0.190 0.810 31 H 0.241 0.759 32 H 0.412 0.588 33 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -4.000 15.221 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.096 0.904 9 C 0.103 3.897 10 H 0.094 0.906 11 N -0.336 5.336 12 C 0.312 3.688 13 O -0.439 6.439 14 C -0.027 4.027 15 C -0.201 4.201 16 C 0.053 3.947 17 N -0.227 5.227 18 C 0.215 3.785 19 N -0.367 5.367 20 C -0.235 4.235 21 N 0.573 4.427 22 O -0.375 6.375 23 O -0.384 6.384 24 C 0.385 3.615 25 F -0.163 7.163 26 F -0.163 7.163 27 F -0.177 7.177 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.207 0.793 31 H 0.257 0.743 32 H 0.242 0.758 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.389 -3.954 15.976 18.473 hybrid contribution 0.532 0.975 -1.509 1.873 sum 8.922 -2.979 14.467 17.256 Atomic orbital electron populations 1.69875 1.07234 1.29549 1.45072 1.25375 0.95143 1.01054 0.91682 0.86329 0.79417 0.81072 0.80019 1.19012 1.18942 1.19409 1.20604 0.86552 0.95757 1.54200 0.90374 1.19863 0.97027 0.92276 0.80507 0.90577 1.47034 1.16650 1.57840 1.12078 1.18898 0.82850 0.79513 0.87529 1.90858 1.52265 1.43487 1.57304 1.20157 0.91948 0.96018 0.94580 1.22662 1.01969 1.01605 0.93842 1.23797 0.89500 0.87517 0.93858 1.67652 1.05752 1.15128 1.34184 1.17801 0.88685 0.88321 0.83683 1.42360 1.14640 1.63356 1.16351 1.21399 0.94904 1.15843 0.91321 1.43262 0.99806 1.00497 0.99162 1.94507 1.31675 1.66368 1.44983 1.94515 1.76869 0.97477 1.69532 1.21477 0.74904 0.85215 0.79905 1.93087 1.90152 1.47368 1.85742 1.93114 1.88709 1.96197 1.38308 1.93172 1.31475 1.96543 1.96529 0.90661 0.74040 0.79266 0.74268 0.75771 0.73384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.10 13.96 21.45 0.30 -45.80 16 2 C 0.08 3.78 5.47 84.66 0.46 4.25 16 3 Si 0.91 40.68 26.99 68.60 1.85 42.53 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -12.63 6.82 99.48 0.68 -11.95 16 7 C -0.53 -25.79 8.52 25.60 0.22 -25.57 16 8 H 0.08 4.06 8.00 -2.91 -0.02 4.04 16 9 C 0.21 9.23 1.71 44.24 0.08 9.31 16 10 H 0.08 3.71 4.73 -2.39 -0.01 3.70 16 11 N -0.68 -25.70 4.87 -448.67 -2.18 -27.88 16 12 C 0.53 20.67 7.45 86.88 0.65 21.32 16 13 O -0.56 -26.82 13.29 9.35 0.12 -26.69 16 14 C -0.02 -0.46 5.90 -19.91 -0.12 -0.57 16 15 C -0.18 -3.25 9.61 22.63 0.22 -3.03 16 16 C 0.21 2.68 11.16 84.61 0.94 3.63 16 17 N -0.51 -8.93 10.36 -193.40 -2.00 -10.93 16 18 C 0.46 10.31 7.74 133.08 1.03 11.34 16 19 N -0.82 -13.93 9.07 -55.47 -0.50 -14.44 16 20 C -0.14 -4.43 6.22 36.89 0.23 -4.20 16 21 N 0.05 1.70 1.73 -45.24 -0.08 1.62 16 22 O -0.15 -5.95 19.02 21.54 0.41 -5.54 16 23 O -0.16 -6.53 19.01 21.59 0.41 -6.12 16 24 C 0.44 19.17 2.83 71.98 0.20 19.37 16 25 F -0.18 -7.33 16.93 44.97 0.76 -6.56 16 26 F -0.18 -8.11 16.89 44.97 0.76 -7.35 16 27 F -0.20 -8.75 15.83 44.97 0.71 -8.04 16 28 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 29 H 0.42 12.75 6.73 -92.71 -0.62 12.12 16 30 H 0.19 2.40 6.53 -2.91 -0.02 2.38 16 31 H 0.24 0.33 8.06 -2.91 -0.02 0.31 16 32 H 0.41 7.32 8.06 -92.71 -0.75 6.57 16 33 H 0.43 4.58 8.95 -92.71 -0.83 3.75 16 Total: -1.00 -70.78 314.98 3.51 -67.27 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.96 Total: 12.11 kcal Atomic # 6 Polarization: 31.92 SS G_CDS: 3.91 Total: 35.83 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -4.47 Total: -97.43 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: 0.94 Total: -38.35 kcal Atomic # 9 Polarization: -24.19 SS G_CDS: 2.23 Total: -21.95 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.85 Total: 42.53 kcal Total: -70.78 3.51 -67.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635287723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.804 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds