Wall clock time and date at job start Tue Mar 31 2020 17:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00068 * 2 1 4 4 C 1.53002 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46958 * 63.55261 * 4 3 2 6 6 C 1.36892 * 119.99650 * 90.04480 * 5 4 3 7 7 H 1.08004 * 120.00266 * 230.44483 * 6 5 4 8 8 C 1.39004 * 119.99945 * 50.45567 * 6 5 4 9 9 N 1.31398 * 120.00061 * 202.68684 * 8 6 5 10 10 Si 1.86805 * 120.00145 * 22.67867 * 8 6 5 11 11 H 1.48506 * 109.46651 * 93.03215 * 10 8 6 12 12 H 1.48496 * 109.47244 * 213.03163 * 10 8 6 13 13 H 1.48497 * 109.47104 * 333.03852 * 10 8 6 14 14 C 1.34773 * 120.00409 * 270.04937 * 5 4 3 15 15 O 1.21745 * 120.00070 * 355.72455 * 14 5 4 16 16 C 1.46458 * 120.00272 * 175.72708 * 14 5 4 17 17 C 1.36769 * 125.46485 * 186.27346 * 16 14 5 18 18 C 1.37437 * 113.28092 * 180.02562 * 17 16 14 19 19 C 1.33848 * 115.10752 * 359.97438 * 18 17 16 20 20 S 1.76206 * 124.51616 * 180.02562 * 19 18 17 21 21 N 1.65600 * 107.21560 * 90.00165 * 20 19 18 22 22 O 1.42104 * 106.40359 * 203.54061 * 20 19 18 23 23 O 1.42099 * 106.39947 * 336.46467 * 20 19 18 24 24 S 1.70612 * 110.97116 * 359.72877 * 19 18 17 25 25 H 1.09000 * 109.46977 * 59.99917 * 1 2 3 26 26 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47253 * 300.00330 * 1 2 3 28 28 H 1.08995 * 109.46985 * 60.00267 * 3 2 1 29 29 H 1.08998 * 109.47277 * 299.99983 * 3 2 1 30 30 H 1.08998 * 109.47500 * 303.55670 * 4 3 2 31 31 H 1.08998 * 109.47246 * 183.55176 * 4 3 2 32 32 H 0.96999 * 119.99991 * 179.97438 * 9 8 6 33 33 H 1.08002 * 123.35890 * 359.96673 * 17 16 14 34 34 H 1.08002 * 122.44632 * 179.97438 * 18 17 16 35 35 H 0.97003 * 120.00170 * 359.97438 * 21 20 19 36 36 H 0.96999 * 119.99786 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9742 0.5326 -1.2357 6 6 4.2641 1.2861 -2.3412 7 1 3.8255 1.0355 -3.2958 8 6 5.1232 2.3737 -2.2352 9 7 5.0698 3.3420 -3.1219 10 14 6.3534 2.4590 -0.8320 11 1 7.6473 1.8782 -1.2723 12 1 6.5559 3.8760 -0.4367 13 1 5.8351 1.6905 0.3281 14 6 4.0923 -0.8091 -1.2848 15 8 3.9100 -1.4734 -0.2810 16 6 4.4399 -1.4680 -2.5458 17 6 4.4703 -2.8196 -2.7528 18 6 4.8308 -3.1650 -4.0333 19 6 5.0867 -2.1349 -4.8487 20 16 5.5674 -2.2931 -6.5365 21 7 4.1810 -2.3046 -7.4420 22 8 6.2556 -1.0958 -6.8717 23 8 6.1446 -3.5847 -6.6699 24 16 4.8774 -0.6481 -4.0385 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8526 0.5898 0.8572 31 1 3.9787 2.1784 0.0643 32 1 5.6691 4.1011 -3.0477 33 1 4.2355 -3.5432 -1.9862 34 1 4.9024 -4.1926 -4.3578 35 1 3.3170 -2.2313 -7.0072 36 1 4.2328 -2.3855 -8.4073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638472264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:04 Heat of formation + Delta-G solvation = -111.840389 kcal Electronic energy + Delta-G solvation = -24982.792232 eV Core-core repulsion = 21107.612184 eV Total energy + Delta-G solvation = -3875.180048 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -39.17683 -37.44696 -36.92417 -36.60268 -35.54972 -35.01834 -33.05606 -32.49406 -30.40666 -28.80015 -26.07029 -25.47551 -24.41829 -22.53551 -20.23446 -19.94378 -18.95210 -18.57139 -17.23970 -16.86088 -16.65318 -16.21379 -15.78147 -15.54646 -15.30420 -14.92853 -14.81204 -14.55158 -14.10062 -13.98573 -13.24068 -12.96163 -12.52955 -12.40051 -12.22360 -12.02470 -11.96219 -11.86884 -11.75038 -11.70035 -11.36660 -11.23316 -10.99896 -10.94339 -10.61760 -10.37126 -10.22040 -9.94443 -9.41239 -9.24589 -8.92160 -8.62356 -7.99152 -7.84254 -6.94308 -4.66585 0.61294 0.88703 2.24237 2.60245 2.74651 2.92636 3.03787 3.09108 3.46123 3.81296 3.87681 4.00714 4.07095 4.28018 4.58658 5.10923 5.45748 5.54914 5.60589 5.73429 5.75352 5.78057 5.87780 5.89330 5.90191 6.07784 6.10995 6.30450 6.43103 6.62106 6.84120 7.03046 7.10883 7.59250 7.64600 7.79694 8.51202 8.95605 9.38456 10.10506 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.005001 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.285812 B = 5597.321726 C = 6666.173980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.456 5.456 6 C -0.362 4.362 7 H 0.110 0.890 8 C 0.089 3.911 9 N -0.816 5.816 10 Si 0.864 3.136 11 H -0.265 1.265 12 H -0.274 1.274 13 H -0.248 1.248 14 C 0.549 3.451 15 O -0.562 6.562 16 C -0.186 4.186 17 C -0.131 4.131 18 C -0.012 4.012 19 C -0.916 4.916 20 S 2.731 3.269 21 N -1.252 6.252 22 O -0.965 6.965 23 O -0.974 6.974 24 S 0.431 5.569 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.286 0.714 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.417 0.583 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.584 -2.282 6.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.029 4.029 4 C -0.006 4.006 5 N -0.177 5.177 6 C -0.497 4.497 7 H 0.126 0.874 8 C -0.127 4.127 9 N -0.445 5.445 10 Si 0.687 3.313 11 H -0.190 1.190 12 H -0.199 1.199 13 H -0.171 1.171 14 C 0.338 3.662 15 O -0.445 6.445 16 C -0.311 4.311 17 C -0.164 4.164 18 C -0.050 4.050 19 C -1.121 5.121 20 S 2.819 3.181 21 N -0.926 5.926 22 O -0.955 6.955 23 O -0.963 6.963 24 S 0.711 5.289 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.244 0.756 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.217 -2.441 -2.624 5.534 hybrid contribution -0.607 -0.996 1.225 1.691 sum -4.824 -3.437 -1.400 6.086 Atomic orbital electron populations 1.22649 0.82604 1.01984 0.99162 1.88100 1.18164 1.27461 1.95187 1.22983 0.95022 0.84949 0.99909 1.21720 0.91607 0.98193 0.89095 1.43367 1.58698 1.04166 1.11516 1.18844 1.30214 1.11971 0.88625 0.87373 1.25578 0.95766 0.93977 0.97362 1.69764 1.33680 1.06105 1.34979 0.87043 0.82462 0.78708 0.83054 1.18979 1.19871 1.17135 1.17249 0.79984 0.82762 0.86193 1.90716 1.54309 1.64647 1.34849 1.25420 1.07343 0.98167 1.00147 1.20651 1.04026 0.94396 0.97339 1.19397 0.95078 0.98254 0.92268 1.35743 1.32291 1.14250 1.29786 1.00471 0.71927 0.73733 0.71968 1.53103 1.25055 1.94807 1.19614 1.93607 1.70925 1.48137 1.82811 1.93546 1.75219 1.41670 1.85870 1.85092 1.52096 0.95381 0.96352 0.94609 0.90308 0.94866 0.93608 0.92393 0.90158 0.89847 0.90305 0.83588 0.84558 0.75614 0.75473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.06 9.61 -37.58 -0.36 -7.43 16 3 C 0.05 0.87 6.29 37.16 0.23 1.10 16 4 C 0.12 2.34 4.10 -4.04 -0.02 2.32 16 5 N -0.46 -10.18 1.86 -116.37 -0.22 -10.40 16 6 C -0.36 -8.31 7.21 -15.01 -0.11 -8.42 16 7 H 0.11 2.56 5.52 -31.30 -0.17 2.39 16 8 C 0.09 2.06 5.21 -17.45 -0.09 1.96 16 9 N -0.82 -19.44 13.96 55.50 0.77 -18.67 16 10 Si 0.86 17.98 26.54 -169.99 -4.51 13.47 16 11 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.25 -5.06 5.61 56.52 0.32 -4.74 16 14 C 0.55 12.69 7.12 -12.95 -0.09 12.60 16 15 O -0.56 -13.97 15.84 2.80 0.04 -13.93 16 16 C -0.19 -3.91 6.31 -36.80 -0.23 -4.14 16 17 C -0.13 -2.44 10.02 -40.40 -0.40 -2.84 16 18 C -0.01 -0.20 9.77 -41.41 -0.40 -0.61 16 19 C -0.92 -15.75 6.32 29.19 0.18 -15.57 16 20 S 2.73 42.18 6.41 -107.50 -0.69 41.49 16 21 N -1.25 -13.24 9.55 60.35 0.58 -12.66 16 22 O -0.97 -18.06 17.83 -57.17 -1.02 -19.08 16 23 O -0.97 -17.07 17.74 -57.17 -1.01 -18.09 16 24 S 0.43 8.52 18.10 -107.50 -1.95 6.58 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.65 7.37 -51.93 -0.38 1.27 16 31 H 0.08 1.58 5.12 -51.93 -0.27 1.31 16 32 H 0.29 6.34 8.31 -40.82 -0.34 6.00 16 33 H 0.15 2.55 8.06 -52.49 -0.42 2.13 16 34 H 0.14 1.93 8.02 -52.49 -0.42 1.51 16 35 H 0.42 3.61 8.92 -34.47 -0.31 3.30 16 36 H 0.42 3.36 8.96 -34.47 -0.31 3.05 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -31.62 331.60 -6.80 -38.42 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.61 Total: 7.31 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 0.18 Total: -12.01 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 1.13 Total: -41.73 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -2.35 Total: -58.52 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.51 Total: 13.47 kcal Atomic # 16 Polarization: 50.70 SS G_CDS: -2.64 Total: 48.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.62 -6.80 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638472264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.423 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds