Wall clock time and date at job start Tue Mar 31 2020 17:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00068 * 2 1 4 4 C 1.53002 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46958 * 63.55261 * 4 3 2 6 6 C 1.36892 * 119.99650 * 90.04480 * 5 4 3 7 7 H 1.08004 * 120.00266 * 230.44483 * 6 5 4 8 8 C 1.39004 * 119.99945 * 50.45567 * 6 5 4 9 9 N 1.31398 * 120.00061 * 202.68684 * 8 6 5 10 10 Si 1.86805 * 120.00145 * 22.67867 * 8 6 5 11 11 H 1.48506 * 109.46651 * 93.03215 * 10 8 6 12 12 H 1.48496 * 109.47244 * 213.03163 * 10 8 6 13 13 H 1.48497 * 109.47104 * 333.03852 * 10 8 6 14 14 C 1.34773 * 120.00409 * 270.04937 * 5 4 3 15 15 O 1.21745 * 120.00070 * 355.72455 * 14 5 4 16 16 C 1.46458 * 120.00272 * 175.72708 * 14 5 4 17 17 C 1.36769 * 125.46485 * 186.27346 * 16 14 5 18 18 C 1.37437 * 113.28092 * 180.02562 * 17 16 14 19 19 C 1.33848 * 115.10752 * 359.97438 * 18 17 16 20 20 S 1.76206 * 124.51616 * 180.02562 * 19 18 17 21 21 N 1.65600 * 107.21560 * 90.00165 * 20 19 18 22 22 O 1.42104 * 106.40359 * 203.54061 * 20 19 18 23 23 O 1.42099 * 106.39947 * 336.46467 * 20 19 18 24 24 S 1.70612 * 110.97116 * 359.72877 * 19 18 17 25 25 H 1.09000 * 109.46977 * 59.99917 * 1 2 3 26 26 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47253 * 300.00330 * 1 2 3 28 28 H 1.08995 * 109.46985 * 60.00267 * 3 2 1 29 29 H 1.08998 * 109.47277 * 299.99983 * 3 2 1 30 30 H 1.08998 * 109.47500 * 303.55670 * 4 3 2 31 31 H 1.08998 * 109.47246 * 183.55176 * 4 3 2 32 32 H 0.96999 * 119.99991 * 179.97438 * 9 8 6 33 33 H 1.08002 * 123.35890 * 359.96673 * 17 16 14 34 34 H 1.08002 * 122.44632 * 179.97438 * 18 17 16 35 35 H 0.97003 * 120.00170 * 359.97438 * 21 20 19 36 36 H 0.96999 * 119.99786 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9742 0.5326 -1.2357 6 6 4.2641 1.2861 -2.3412 7 1 3.8255 1.0355 -3.2958 8 6 5.1232 2.3737 -2.2352 9 7 5.0698 3.3420 -3.1219 10 14 6.3534 2.4590 -0.8320 11 1 7.6473 1.8782 -1.2723 12 1 6.5559 3.8760 -0.4367 13 1 5.8351 1.6905 0.3281 14 6 4.0923 -0.8091 -1.2848 15 8 3.9100 -1.4734 -0.2810 16 6 4.4399 -1.4680 -2.5458 17 6 4.4703 -2.8196 -2.7528 18 6 4.8308 -3.1650 -4.0333 19 6 5.0867 -2.1349 -4.8487 20 16 5.5674 -2.2931 -6.5365 21 7 4.1810 -2.3046 -7.4420 22 8 6.2556 -1.0958 -6.8717 23 8 6.1446 -3.5847 -6.6699 24 16 4.8774 -0.6481 -4.0385 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8526 0.5898 0.8572 31 1 3.9787 2.1784 0.0643 32 1 5.6691 4.1011 -3.0477 33 1 4.2355 -3.5432 -1.9862 34 1 4.9024 -4.1926 -4.3578 35 1 3.3170 -2.2313 -7.0072 36 1 4.2328 -2.3855 -8.4073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638472264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:03 Heat of formation + Delta-G solvation = -137.818561 kcal Electronic energy + Delta-G solvation = -24983.918730 eV Core-core repulsion = 21107.612184 eV Total energy + Delta-G solvation = -3876.306546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85242 -38.87196 -38.33603 -38.02391 -36.92301 -36.74435 -34.22707 -34.04944 -31.93519 -30.27243 -27.31709 -27.16495 -25.92702 -24.01234 -21.84696 -21.32708 -20.43975 -19.97798 -18.51127 -18.36292 -18.02723 -17.71144 -17.17372 -16.93048 -16.71933 -16.35635 -16.29221 -16.03840 -15.70640 -15.47662 -14.73801 -14.63316 -14.03519 -13.90962 -13.67987 -13.60539 -13.30339 -13.20772 -13.15431 -13.09454 -12.90301 -12.74067 -12.53296 -12.43943 -11.99249 -11.83456 -11.52997 -11.34855 -11.10103 -10.74155 -10.51226 -10.17686 -9.63998 -9.43350 -8.69412 -6.44264 -0.78637 -0.50397 0.70284 1.06899 1.24867 1.28671 1.37076 1.41175 2.11030 2.22391 2.31863 2.44427 2.66216 2.84708 2.98922 3.81130 4.03483 4.19384 4.26659 4.34552 4.44088 4.48224 4.52362 4.56259 4.61725 4.82228 4.84977 4.91255 5.11399 5.28560 5.35141 5.41241 5.87453 6.07665 6.35162 6.36565 6.75850 7.21311 7.65407 8.38578 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.005001 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.285812 B = 5597.321726 C = 6666.173980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.459 5.459 6 C -0.367 4.367 7 H 0.099 0.901 8 C 0.067 3.933 9 N -0.847 5.847 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.259 1.259 13 H -0.245 1.245 14 C 0.541 3.459 15 O -0.589 6.589 16 C -0.218 4.218 17 C -0.119 4.119 18 C -0.004 4.004 19 C -0.900 4.900 20 S 2.757 3.243 21 N -1.231 6.231 22 O -0.998 6.998 23 O -0.989 6.989 24 S 0.400 5.600 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.291 0.709 33 H 0.158 0.842 34 H 0.171 0.829 35 H 0.429 0.571 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 -4.632 -2.742 8.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.022 4.022 4 C -0.014 4.014 5 N -0.180 5.180 6 C -0.500 4.500 7 H 0.116 0.884 8 C -0.146 4.146 9 N -0.478 5.478 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.183 1.183 13 H -0.169 1.169 14 C 0.331 3.669 15 O -0.475 6.475 16 C -0.342 4.342 17 C -0.153 4.153 18 C -0.041 4.041 19 C -1.104 5.104 20 S 2.843 3.157 21 N -0.913 5.913 22 O -0.987 6.987 23 O -0.978 6.978 24 S 0.678 5.322 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.259 0.741 36 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.928 -3.436 -3.059 6.741 hybrid contribution -0.454 -0.857 1.242 1.576 sum -5.382 -4.293 -1.816 7.120 Atomic orbital electron populations 1.22851 0.80255 1.03131 1.00567 1.88045 1.20852 1.28147 1.95472 1.22900 0.93287 0.84925 1.01101 1.21871 0.93634 0.98057 0.87823 1.43475 1.58489 1.04084 1.11941 1.18807 1.30437 1.11954 0.88807 0.88416 1.25902 0.96412 0.93750 0.98565 1.69782 1.34782 1.06837 1.36372 0.86539 0.80491 0.79380 0.81630 1.20300 1.18281 1.16883 1.17568 0.79630 0.83028 0.86658 1.90675 1.55752 1.65146 1.35912 1.25403 1.09696 0.99166 0.99960 1.20946 1.02391 0.93643 0.98335 1.19715 0.93539 0.99744 0.91130 1.35881 1.30846 1.12812 1.30813 0.99655 0.72221 0.72737 0.71123 1.52604 1.24134 1.94313 1.20207 1.93579 1.72589 1.49574 1.82944 1.93533 1.76284 1.42204 1.85766 1.85133 1.53526 0.96855 0.96684 0.94006 0.89388 0.92556 0.90294 0.93108 0.91133 0.89149 0.89838 0.82487 0.81133 0.74073 0.73545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.24 9.61 -146.73 -1.41 -16.65 16 3 C 0.06 1.92 6.29 71.98 0.45 2.37 16 4 C 0.11 4.36 4.10 86.38 0.35 4.71 16 5 N -0.46 -20.75 1.86 -640.28 -1.19 -21.94 16 6 C -0.37 -17.12 7.21 84.09 0.61 -16.51 16 7 H 0.10 4.76 5.52 -16.38 -0.09 4.66 16 8 C 0.07 3.12 5.21 84.94 0.44 3.56 16 9 N -0.85 -40.83 13.96 21.67 0.30 -40.52 16 10 Si 0.90 36.90 26.54 68.60 1.82 38.72 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 H -0.25 -9.90 5.61 99.48 0.56 -9.34 16 14 C 0.54 25.30 7.12 86.38 0.62 25.91 16 15 O -0.59 -29.63 15.84 -2.24 -0.04 -29.66 16 16 C -0.22 -9.15 6.31 24.07 0.15 -8.99 16 17 C -0.12 -4.26 10.02 21.74 0.22 -4.04 16 18 C 0.00 -0.14 9.77 21.08 0.21 0.07 16 19 C -0.90 -29.34 6.32 66.82 0.42 -28.92 16 20 S 2.76 79.21 6.41 -56.49 -0.36 78.85 16 21 N -1.23 -22.53 9.55 37.02 0.35 -22.17 16 22 O -1.00 -36.11 17.83 -128.00 -2.28 -38.40 16 23 O -0.99 -31.97 17.74 -128.00 -2.27 -34.24 16 24 S 0.40 15.75 18.10 -56.49 -1.02 14.73 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 2.93 7.37 -2.39 -0.02 2.91 16 31 H 0.09 3.40 5.12 -2.39 -0.01 3.39 16 32 H 0.29 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.16 5.22 8.06 -2.91 -0.02 5.20 16 34 H 0.17 4.13 8.02 -2.91 -0.02 4.11 16 35 H 0.43 6.12 8.92 -96.74 -0.86 5.26 16 36 H 0.43 5.63 8.96 -96.75 -0.87 4.76 16 Total: -1.00 -67.86 331.60 -2.17 -70.04 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.79 Total: 21.10 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.72 Total: -19.84 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -0.53 Total: -84.63 kcal Atomic # 8 Polarization: -112.96 SS G_CDS: -6.00 Total: -118.96 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.82 Total: 38.72 kcal Atomic # 16 Polarization: 94.96 SS G_CDS: -1.38 Total: 93.58 kcal Total: -67.86 -2.17 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638472264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.783 kcal (2) G-P(sol) polarization free energy of solvation -67.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds