Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48496 * 109.47146 * 269.99940 * 3 2 1 5 5 H 1.48500 * 109.46962 * 30.00493 * 3 2 1 6 6 H 1.48503 * 109.46942 * 150.00271 * 3 2 1 7 7 C 1.37881 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99483 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46692 * 299.99865 * 9 7 2 11 11 N 1.46497 * 109.46857 * 180.02562 * 9 7 2 12 12 C 1.34772 * 120.00321 * 155.00000 * 11 9 7 13 13 O 1.21598 * 119.99919 * 359.97438 * 12 11 9 14 14 C 1.47542 * 120.00544 * 180.02562 * 12 11 9 15 15 C 1.39602 * 120.47509 * 359.97438 * 14 12 11 16 16 N 1.31644 * 120.51902 * 179.97438 * 15 14 12 17 17 C 1.32632 * 121.63591 * 0.02562 * 16 15 14 18 18 N 1.38461 * 119.53356 * 179.97438 * 17 16 15 19 19 C 1.39356 * 120.92514 * 359.97438 * 17 16 15 20 20 N 1.48021 * 120.30955 * 179.97438 * 19 17 16 21 21 O 1.21799 * 120.00129 * 218.06560 * 20 19 17 22 22 O 1.21802 * 119.99638 * 37.79689 * 20 19 17 23 23 C 1.36898 * 119.37959 * 0.26050 * 19 17 16 24 24 C 1.52991 * 109.47394 * 60.00266 * 9 7 2 25 25 F 1.39901 * 109.47354 * 179.97438 * 24 9 7 26 26 F 1.39902 * 109.47373 * 299.99736 * 24 9 7 27 27 F 1.39900 * 109.47349 * 59.99941 * 24 9 7 28 28 H 0.97005 * 120.00456 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00339 * 334.99920 * 11 9 7 30 30 H 1.08001 * 119.73710 * 359.97438 * 15 14 12 31 31 H 0.97008 * 119.99733 * 188.66899 * 18 17 16 32 32 H 0.96998 * 120.00558 * 8.67660 * 18 17 16 33 33 H 1.07994 * 120.75220 * 179.75105 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8897 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7166 -4.9703 0.9382 14 6 2.7959 -5.9336 0.4933 15 6 4.0848 -5.7632 -0.0152 16 7 4.9412 -6.7629 -0.0147 17 6 4.6165 -7.9569 0.4628 18 7 5.5515 -8.9779 0.4414 19 6 3.3475 -8.1982 0.9857 20 7 2.9995 -9.5362 1.5146 21 8 1.8856 -9.9930 1.3303 22 8 3.8286 -10.1823 2.1298 23 6 2.4239 -7.1878 1.0004 24 6 0.3710 -2.5800 -1.2494 25 9 -0.3281 -3.7918 -1.2497 26 9 -0.5382 -1.5167 -1.2489 27 9 1.1748 -2.5057 -2.3920 28 1 -0.4851 0.8400 0.0004 29 1 3.0969 -3.4866 -0.3556 30 1 4.3816 -4.8036 -0.4121 31 1 5.2869 -9.8828 0.6701 32 1 6.4711 -8.7885 0.1979 33 1 1.4327 -7.3514 1.3967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645010468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = -129.021577 kcal Electronic energy + Delta-G solvation = -29019.511497 eV Core-core repulsion = 24055.825606 eV Total energy + Delta-G solvation = -4963.685891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.46110 -46.11577 -45.71987 -42.57587 -40.89775 -38.98037 -36.89637 -35.41618 -34.98607 -33.50514 -32.77747 -30.84226 -28.46100 -26.86027 -24.75703 -24.27997 -23.73482 -21.84428 -20.62024 -19.51435 -19.08440 -18.53810 -18.31913 -17.68326 -17.20381 -16.96297 -16.75131 -16.67937 -16.04454 -15.55272 -15.25621 -14.96549 -14.51882 -14.25906 -13.99544 -13.61084 -13.31750 -13.03096 -12.64461 -12.51000 -12.39242 -12.10537 -11.92884 -11.87291 -11.71063 -11.53718 -11.38550 -11.27336 -10.98115 -10.93735 -10.84788 -10.58832 -10.45689 -9.80314 -9.62117 -8.87677 -8.80054 -8.47665 -6.34431 -4.59912 -0.29882 0.38221 0.83835 1.06944 2.61131 2.65885 3.12257 3.18036 3.20661 3.36778 3.52584 3.66517 4.09172 4.15821 4.26107 4.42776 4.49209 4.65293 4.82709 5.12972 5.44606 5.54757 5.71434 5.74401 6.03844 6.07120 6.31409 6.58444 6.74945 6.88995 7.28536 7.30104 7.36323 7.51055 8.01229 8.34344 8.55136 9.08601 10.57018 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.003263 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.738900 B = 8579.441061 C = 9204.743435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.089 0.911 11 N -0.702 5.702 12 C 0.560 3.440 13 O -0.524 6.524 14 C -0.229 4.229 15 C 0.233 3.767 16 N -0.528 5.528 17 C 0.478 3.522 18 N -0.820 5.820 19 C -0.168 4.168 20 N 0.040 4.960 21 O -0.140 6.140 22 O -0.175 6.175 23 C 0.082 3.918 24 C 0.417 3.583 25 F -0.217 7.217 26 F -0.135 7.135 27 F -0.208 7.208 28 H 0.270 0.730 29 H 0.397 0.603 30 H 0.185 0.815 31 H 0.419 0.581 32 H 0.417 0.583 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.243 -11.718 -0.306 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.107 0.893 11 N -0.352 5.352 12 C 0.345 3.655 13 O -0.401 6.401 14 C -0.238 4.238 15 C 0.072 3.928 16 N -0.247 5.247 17 C 0.234 3.766 18 N -0.363 5.363 19 C -0.259 4.259 20 N 0.559 4.441 21 O -0.361 6.361 22 O -0.384 6.384 23 C 0.056 3.944 24 C 0.360 3.640 25 F -0.199 7.199 26 F -0.116 7.116 27 F -0.190 7.190 28 H 0.081 0.919 29 H 0.232 0.768 30 H 0.202 0.798 31 H 0.254 0.746 32 H 0.249 0.751 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.266 -10.987 -0.542 15.047 hybrid contribution 0.019 0.168 -0.099 0.196 sum 10.285 -10.820 -0.640 14.941 Atomic orbital electron populations 1.70386 1.05896 1.27603 1.43128 1.25077 0.95164 1.00186 0.93884 0.86193 0.79537 0.81517 0.78506 1.20147 1.20746 1.19429 1.20844 0.93801 0.87906 1.56692 0.90281 1.19829 0.88607 0.85445 0.92091 0.89298 1.45970 1.17324 1.10286 1.61625 1.17624 0.86622 0.82265 0.78990 1.90834 1.20307 1.82697 1.46255 1.20830 0.97202 0.95640 1.10125 1.23296 0.87105 0.96624 0.85762 1.67725 1.35627 0.98452 1.22848 1.18027 0.84584 0.88536 0.85425 1.42638 1.11652 1.09034 1.73012 1.21009 0.98237 0.86560 1.20108 1.43335 1.00559 1.01990 0.98193 1.94599 1.07941 1.72188 1.61375 1.94468 1.45236 1.59527 1.39218 1.21045 0.98579 0.88701 0.86098 1.23107 0.80931 0.72914 0.87018 1.93078 1.81511 1.48347 1.96966 1.93415 1.68311 1.53702 1.96175 1.92994 1.74401 1.96184 1.55459 0.91946 0.76774 0.79844 0.74612 0.75118 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.88 9.50 55.43 0.53 -21.35 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 19.04 29.54 -169.99 -5.02 14.02 16 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.56 -13.11 8.47 -34.44 -0.29 -13.40 16 8 H 0.08 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.25 5.62 2.21 -69.09 -0.15 5.46 16 10 H 0.09 2.29 7.58 -51.93 -0.39 1.89 16 11 N -0.70 -12.64 4.94 -55.98 -0.28 -12.92 16 12 C 0.56 9.88 7.30 -12.47 -0.09 9.79 16 13 O -0.52 -11.23 14.98 5.28 0.08 -11.15 16 14 C -0.23 -3.08 5.89 -104.82 -0.62 -3.70 16 15 C 0.23 2.54 10.71 -17.12 -0.18 2.35 16 16 N -0.53 -5.66 10.39 -12.14 -0.13 -5.79 16 17 C 0.48 5.10 7.70 -155.26 -1.19 3.90 16 18 N -0.82 -6.22 8.79 31.10 0.27 -5.95 16 19 C -0.17 -2.04 6.49 -80.01 -0.52 -2.56 16 20 N 0.04 0.52 4.26 33.93 0.14 0.66 16 21 O -0.14 -1.95 18.98 -29.46 -0.56 -2.51 16 22 O -0.18 -2.15 16.81 -29.46 -0.50 -2.64 16 23 C 0.08 1.08 9.27 -39.29 -0.36 0.72 16 24 C 0.42 10.04 2.81 37.15 0.10 10.15 16 25 F -0.22 -5.21 15.68 2.25 0.04 -5.17 16 26 F -0.13 -3.56 12.91 2.25 0.03 -3.54 16 27 F -0.21 -4.80 16.94 2.25 0.04 -4.76 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.40 5.76 6.59 -40.82 -0.27 5.49 16 30 H 0.18 1.51 6.41 -52.49 -0.34 1.17 16 31 H 0.42 3.02 6.49 -40.82 -0.26 2.75 16 32 H 0.42 2.20 8.95 -40.82 -0.37 1.83 16 33 H 0.17 2.28 7.71 -52.49 -0.40 1.88 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -29.70 310.84 -5.64 -35.35 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -1.57 Total: 6.83 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -3.40 Total: 14.24 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.54 Total: -45.34 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.98 Total: -16.30 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 0.10 Total: -13.48 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.70 -5.64 -35.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645010468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.674 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds