Wall clock time and date at job start Tue Mar 31 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99886 * 2 1 4 4 H 1.48496 * 109.47146 * 269.99940 * 3 2 1 5 5 H 1.48500 * 109.46962 * 30.00493 * 3 2 1 6 6 H 1.48503 * 109.46942 * 150.00271 * 3 2 1 7 7 C 1.37881 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99483 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46692 * 299.99865 * 9 7 2 11 11 N 1.46497 * 109.46857 * 180.02562 * 9 7 2 12 12 C 1.34772 * 120.00321 * 155.00000 * 11 9 7 13 13 O 1.21598 * 119.99919 * 359.97438 * 12 11 9 14 14 C 1.47542 * 120.00544 * 180.02562 * 12 11 9 15 15 C 1.39602 * 120.47509 * 359.97438 * 14 12 11 16 16 N 1.31644 * 120.51902 * 179.97438 * 15 14 12 17 17 C 1.32632 * 121.63591 * 0.02562 * 16 15 14 18 18 N 1.38461 * 119.53356 * 179.97438 * 17 16 15 19 19 C 1.39356 * 120.92514 * 359.97438 * 17 16 15 20 20 N 1.48021 * 120.30955 * 179.97438 * 19 17 16 21 21 O 1.21799 * 120.00129 * 218.06560 * 20 19 17 22 22 O 1.21802 * 119.99638 * 37.79689 * 20 19 17 23 23 C 1.36898 * 119.37959 * 0.26050 * 19 17 16 24 24 C 1.52991 * 109.47394 * 60.00266 * 9 7 2 25 25 F 1.39901 * 109.47354 * 179.97438 * 24 9 7 26 26 F 1.39902 * 109.47373 * 299.99736 * 24 9 7 27 27 F 1.39900 * 109.47349 * 59.99941 * 24 9 7 28 28 H 0.97005 * 120.00456 * 359.97438 * 1 2 3 29 29 H 0.97008 * 120.00339 * 334.99920 * 11 9 7 30 30 H 1.08001 * 119.73710 * 359.97438 * 15 14 12 31 31 H 0.97008 * 119.99733 * 188.66899 * 18 17 16 32 32 H 0.96998 * 120.00558 * 8.67660 * 18 17 16 33 33 H 1.07994 * 120.75220 * 179.75105 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8897 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8123 0.4927 13 8 0.7166 -4.9703 0.9382 14 6 2.7959 -5.9336 0.4933 15 6 4.0848 -5.7632 -0.0152 16 7 4.9412 -6.7629 -0.0147 17 6 4.6165 -7.9569 0.4628 18 7 5.5515 -8.9779 0.4414 19 6 3.3475 -8.1982 0.9857 20 7 2.9995 -9.5362 1.5146 21 8 1.8856 -9.9930 1.3303 22 8 3.8286 -10.1823 2.1298 23 6 2.4239 -7.1878 1.0004 24 6 0.3710 -2.5800 -1.2494 25 9 -0.3281 -3.7918 -1.2497 26 9 -0.5382 -1.5167 -1.2489 27 9 1.1748 -2.5057 -2.3920 28 1 -0.4851 0.8400 0.0004 29 1 3.0969 -3.4866 -0.3556 30 1 4.3816 -4.8036 -0.4121 31 1 5.2869 -9.8828 0.6701 32 1 6.4711 -8.7885 0.1979 33 1 1.4327 -7.3514 1.3967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645010468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:13 Heat of formation + Delta-G solvation = -149.289947 kcal Electronic energy + Delta-G solvation = -29020.390400 eV Core-core repulsion = 24055.825606 eV Total energy + Delta-G solvation = -4964.564794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.39986 -48.03350 -47.71004 -43.56659 -41.91998 -40.34195 -37.90250 -36.63697 -36.30697 -34.62757 -34.35760 -31.98832 -30.02862 -27.86217 -26.59329 -25.47015 -24.69329 -23.42413 -22.06390 -20.73654 -20.09449 -19.54188 -19.22576 -19.14161 -18.85363 -18.64707 -18.36008 -18.09288 -17.34002 -16.93338 -16.59423 -16.28564 -15.92907 -15.43476 -15.17647 -15.00411 -14.93296 -14.56134 -14.49037 -14.42775 -14.26717 -14.01144 -13.86530 -13.05508 -12.89669 -12.77454 -12.75159 -12.65419 -12.42397 -12.36132 -12.20220 -11.80713 -11.61837 -11.55170 -10.97990 -10.67941 -10.20779 -9.63738 -8.19532 -6.50380 -1.26246 -0.63591 -0.13417 0.09184 1.49340 1.50916 1.53897 1.61977 1.81039 1.97911 2.31319 2.40447 2.56643 2.74502 2.96826 3.19780 3.35506 3.46987 3.56347 3.79152 3.86715 4.05402 4.20535 4.47437 4.63072 4.91734 5.05973 5.29610 5.51886 5.53667 5.65965 5.88431 6.33473 6.51374 6.53435 6.58550 7.12063 7.24772 8.72962 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.003263 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.738900 B = 8579.441061 C = 9204.743435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.016 3.984 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.559 4.559 8 H 0.100 0.900 9 C 0.252 3.748 10 H 0.053 0.947 11 N -0.694 5.694 12 C 0.563 3.437 13 O -0.571 6.571 14 C -0.243 4.243 15 C 0.257 3.743 16 N -0.522 5.522 17 C 0.485 3.515 18 N -0.796 5.796 19 C -0.178 4.178 20 N 0.044 4.956 21 O -0.185 6.185 22 O -0.147 6.147 23 C 0.083 3.917 24 C 0.412 3.588 25 F -0.220 7.220 26 F -0.151 7.151 27 F -0.201 7.201 28 H 0.268 0.732 29 H 0.416 0.584 30 H 0.214 0.786 31 H 0.424 0.576 32 H 0.432 0.568 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -11.959 -0.720 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.596 4.596 8 H 0.118 0.882 9 C 0.145 3.855 10 H 0.071 0.929 11 N -0.345 5.345 12 C 0.350 3.650 13 O -0.450 6.450 14 C -0.253 4.253 15 C 0.094 3.906 16 N -0.241 5.241 17 C 0.240 3.760 18 N -0.339 5.339 19 C -0.269 4.269 20 N 0.560 4.440 21 O -0.395 6.395 22 O -0.365 6.365 23 C 0.056 3.944 24 C 0.356 3.644 25 F -0.202 7.202 26 F -0.132 7.132 27 F -0.183 7.183 28 H 0.078 0.922 29 H 0.255 0.745 30 H 0.231 0.769 31 H 0.259 0.741 32 H 0.267 0.733 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.708 -11.296 -1.000 17.790 hybrid contribution -0.910 0.107 0.052 0.918 sum 12.798 -11.189 -0.948 17.026 Atomic orbital electron populations 1.70527 1.07549 1.28153 1.44636 1.25970 0.95806 1.03659 0.93509 0.85184 0.78712 0.77240 0.78359 1.20085 1.21324 1.17728 1.21244 0.94810 0.87916 1.55616 0.88207 1.19408 0.88880 0.87174 0.90033 0.92946 1.45719 1.17418 1.09424 1.61968 1.18119 0.86650 0.82730 0.77511 1.90810 1.22613 1.83450 1.48154 1.20349 0.97598 0.94140 1.13173 1.23660 0.85575 0.97673 0.83710 1.67902 1.34935 0.98270 1.23001 1.18183 0.84336 0.89090 0.84384 1.42688 1.11909 1.08518 1.70822 1.20970 0.98774 0.85889 1.21296 1.43413 1.00381 1.02178 0.98009 1.94623 1.08605 1.72916 1.63326 1.94435 1.44861 1.59466 1.37786 1.20953 0.98421 0.89136 0.85867 1.23330 0.80923 0.72395 0.87779 1.93070 1.81676 1.48395 1.97020 1.93384 1.68987 1.54531 1.96308 1.92994 1.74045 1.96137 1.55105 0.92230 0.74546 0.76938 0.74079 0.73325 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.49 9.50 21.45 0.20 -46.29 16 2 C 0.02 0.78 5.20 84.66 0.44 1.22 16 3 Si 0.98 38.21 29.54 68.60 2.03 40.24 16 4 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.56 -25.88 8.47 25.60 0.22 -25.66 16 8 H 0.10 4.10 7.74 -2.91 -0.02 4.07 16 9 C 0.25 11.63 2.21 44.24 0.10 11.73 16 10 H 0.05 2.82 7.58 -2.39 -0.02 2.80 16 11 N -0.69 -24.47 4.94 -449.27 -2.22 -26.68 16 12 C 0.56 19.87 7.30 86.70 0.63 20.51 16 13 O -0.57 -25.38 14.98 -4.02 -0.06 -25.44 16 14 C -0.24 -6.29 5.89 -19.99 -0.12 -6.41 16 15 C 0.26 4.81 10.71 85.05 0.91 5.72 16 16 N -0.52 -9.35 10.39 -192.32 -2.00 -11.35 16 17 C 0.49 8.91 7.70 133.23 1.03 9.94 16 18 N -0.80 -9.23 8.79 -55.51 -0.49 -9.72 16 19 C -0.18 -4.07 6.49 36.33 0.24 -3.83 16 20 N 0.04 1.07 4.26 -46.57 -0.20 0.87 16 21 O -0.19 -5.24 18.98 18.89 0.36 -4.88 16 22 O -0.15 -3.30 16.81 18.88 0.32 -2.98 16 23 C 0.08 2.15 9.27 22.46 0.21 2.36 16 24 C 0.41 20.12 2.81 71.98 0.20 20.32 16 25 F -0.22 -10.78 15.68 44.97 0.70 -10.08 16 26 F -0.15 -8.17 12.91 44.97 0.58 -7.59 16 27 F -0.20 -9.13 16.94 44.97 0.76 -8.37 16 28 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 29 H 0.42 11.10 6.59 -92.70 -0.61 10.49 16 30 H 0.21 2.62 6.41 -2.91 -0.02 2.60 16 31 H 0.42 4.66 6.49 -92.70 -0.60 4.06 16 32 H 0.43 2.76 8.95 -92.71 -0.83 1.93 16 33 H 0.16 4.47 7.71 -2.91 -0.02 4.45 16 Total: -1.00 -65.21 310.84 3.07 -62.14 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.77 Total: 14.24 kcal Atomic # 6 Polarization: 32.04 SS G_CDS: 3.85 Total: 35.89 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.70 Total: -93.17 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: 0.62 Total: -33.31 kcal Atomic # 9 Polarization: -28.09 SS G_CDS: 2.05 Total: -26.04 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -65.21 3.07 -62.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645010468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.145 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds