Wall clock time and date at job start Tue Mar 31 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47101 * 264.80889 * 3 2 1 5 5 H 1.48500 * 109.47366 * 24.81106 * 3 2 1 6 6 H 1.48498 * 109.47003 * 144.80732 * 3 2 1 7 7 C 1.37878 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00004 * 4.88524 * 7 2 1 9 9 C 1.50697 * 119.99675 * 184.87808 * 7 2 1 10 10 H 1.08998 * 109.47922 * 334.94925 * 9 7 2 11 11 N 1.46508 * 109.46800 * 94.95115 * 9 7 2 12 12 C 1.34784 * 119.99649 * 205.27563 * 11 9 7 13 13 O 1.21592 * 119.99833 * 359.71417 * 12 11 9 14 14 C 1.47530 * 119.99984 * 179.72341 * 12 11 9 15 15 C 1.39716 * 120.18988 * 359.71913 * 14 12 11 16 16 C 1.37783 * 119.90467 * 179.72364 * 15 14 12 17 17 C 1.38551 * 120.30382 * 0.55540 * 16 15 14 18 18 N 1.48010 * 119.80643 * 179.70035 * 17 16 15 19 19 O 1.21801 * 120.00052 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00054 * 0.02562 * 18 17 16 21 21 C 1.38059 * 120.38683 * 359.72208 * 17 16 15 22 22 C 1.38702 * 120.08328 * 359.97438 * 21 17 16 23 23 O 1.35656 * 120.14771 * 180.02562 * 22 21 17 24 24 C 1.53006 * 109.47121 * 214.94257 * 9 7 2 25 25 F 1.39902 * 109.47147 * 294.94708 * 24 9 7 26 26 F 1.39896 * 109.46608 * 54.94580 * 24 9 7 27 27 F 1.39897 * 109.47107 * 174.94793 * 24 9 7 28 28 H 0.97005 * 119.99848 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00137 * 24.98969 * 11 9 7 30 30 H 1.07999 * 120.04263 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.85115 * 180.28078 * 16 15 14 32 32 H 1.07995 * 119.95541 * 180.02562 * 21 17 16 33 33 H 0.96702 * 113.99900 * 269.97945 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3943 5 1 1.3961 2.6819 0.5875 6 1 3.4875 1.4744 0.8069 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1277 -0.0787 9 6 3.5074 -1.1963 0.1115 10 1 3.9004 -0.2484 -0.2561 11 7 3.8932 -1.3740 1.5137 12 6 5.0849 -0.9179 1.9477 13 8 5.8420 -0.3635 1.1743 14 6 5.4709 -1.0914 3.3610 15 6 4.6017 -1.7227 4.2543 16 6 4.9706 -1.8867 5.5716 17 6 6.1955 -1.4181 6.0182 18 7 6.5778 -1.5943 7.4372 19 8 7.6536 -1.1832 7.8337 20 8 5.8165 -2.1503 8.2084 21 6 7.0615 -0.7873 5.1474 22 6 6.7092 -0.6192 3.8165 23 8 7.5593 0.0000 2.9596 24 6 4.0788 -2.3437 -0.7239 25 9 3.6668 -3.5657 -0.1814 26 9 3.6158 -2.2379 -2.0398 27 9 5.4761 -2.2767 -0.7143 28 1 -0.4850 0.8401 -0.0004 29 1 3.2893 -1.8163 2.1306 30 1 3.6438 -2.0853 3.9117 31 1 4.2999 -2.3789 6.2604 32 1 8.0148 -0.4251 5.5029 33 1 7.4364 0.9577 2.9070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645934454.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:12 Heat of formation + Delta-G solvation = -225.666653 kcal Electronic energy + Delta-G solvation = -29103.786869 eV Core-core repulsion = 24103.617382 eV Total energy + Delta-G solvation = -5000.169487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.90197 -48.41426 -48.38989 -43.38159 -41.74763 -39.90154 -38.12793 -37.75043 -36.63999 -34.65545 -33.48962 -31.49199 -30.92156 -28.10883 -26.92306 -24.63793 -24.25210 -23.11363 -21.87366 -20.88938 -20.33081 -19.89990 -19.37147 -19.02653 -18.75405 -18.60576 -18.48287 -18.39178 -17.50933 -16.67022 -16.40735 -16.35150 -15.61008 -15.56524 -15.28795 -15.23778 -14.93916 -14.84537 -14.68126 -14.59205 -14.53170 -14.31587 -13.93924 -13.69772 -13.31117 -13.06092 -12.83249 -12.62930 -12.58548 -12.35558 -12.10123 -12.01380 -11.87704 -11.20822 -10.97454 -10.86739 -10.32910 -10.20516 -8.57422 -6.77198 -1.59297 -0.32526 -0.10853 0.15684 1.24403 1.32961 1.38350 1.42043 1.78496 2.03718 2.14282 2.27430 2.74652 2.87394 3.14951 3.19787 3.30308 3.36691 3.41970 3.58087 3.73614 3.89644 4.27090 4.35163 4.47700 4.53813 4.70102 4.89298 4.90584 5.19917 5.27537 5.84039 6.38431 6.42007 6.50147 6.52954 6.96500 7.05985 8.54441 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.003857 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.530081 B = 7258.639510 C = 7697.926860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.211 3.789 10 H 0.083 0.917 11 N -0.701 5.701 12 C 0.537 3.463 13 O -0.543 6.543 14 C -0.121 4.121 15 C -0.057 4.057 16 C -0.060 4.060 17 C -0.015 4.015 18 N 0.028 4.972 19 O -0.174 6.174 20 O -0.154 6.154 21 C -0.087 4.087 22 C 0.170 3.830 23 O -0.478 6.478 24 C 0.438 3.562 25 F -0.186 7.186 26 F -0.185 7.185 27 F -0.193 7.193 28 H 0.281 0.719 29 H 0.414 0.586 30 H 0.180 0.820 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.841 -0.284 10.169 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.107 3.893 10 H 0.101 0.899 11 N -0.355 5.355 12 C 0.324 3.676 13 O -0.421 6.421 14 C -0.125 4.125 15 C -0.076 4.076 16 C -0.078 4.078 17 C -0.098 4.098 18 N 0.546 4.454 19 O -0.387 6.387 20 O -0.373 6.373 21 C -0.107 4.107 22 C 0.122 3.878 23 O -0.292 6.292 24 C 0.382 3.618 25 F -0.168 7.168 26 F -0.166 7.166 27 F -0.175 7.175 28 H 0.091 0.909 29 H 0.253 0.747 30 H 0.198 0.802 31 H 0.205 0.795 32 H 0.195 0.805 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 9.248 -0.252 8.788 12.760 hybrid contribution -0.077 0.704 0.197 0.735 sum 9.172 0.452 8.985 12.847 Atomic orbital electron populations 1.69918 1.07676 1.29500 1.45670 1.25537 0.95220 1.01726 0.91633 0.86173 0.79697 0.80014 0.80100 1.19059 1.19637 1.17709 1.20645 0.87143 0.95505 1.54258 0.91276 1.19771 0.96450 0.92205 0.80889 0.89933 1.47073 1.17833 1.58955 1.11591 1.18601 0.81931 0.79328 0.87744 1.90803 1.51454 1.42932 1.56938 1.21019 0.95471 1.01828 0.94196 1.21584 1.00108 0.94931 0.90948 1.21231 0.93632 0.96180 0.96784 1.21183 0.98907 1.08986 0.80765 1.43762 1.00030 0.98041 1.03544 1.94556 1.10532 1.51878 1.81711 1.94545 1.48783 1.41591 1.52342 1.21277 1.01216 0.97362 0.90807 1.18092 0.87244 0.95171 0.87337 1.84761 1.55305 1.27271 1.61849 1.21617 0.74998 0.85329 0.79820 1.93082 1.90215 1.47724 1.85767 1.93107 1.88763 1.96210 1.38540 1.93160 1.31287 1.96538 1.96521 0.90904 0.74718 0.80249 0.79539 0.80492 0.72132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.27 13.96 21.45 0.30 -45.97 16 2 C 0.07 3.20 5.47 84.65 0.46 3.66 16 3 Si 0.92 37.77 26.99 68.60 1.85 39.62 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -10.19 6.82 99.48 0.68 -9.51 16 7 C -0.54 -25.32 8.52 25.60 0.22 -25.10 16 8 H 0.07 3.59 8.00 -2.91 -0.02 3.57 16 9 C 0.21 8.78 1.71 44.24 0.08 8.86 16 10 H 0.08 3.63 4.73 -2.39 -0.01 3.62 16 11 N -0.70 -24.02 4.86 -449.24 -2.18 -26.21 16 12 C 0.54 17.76 7.42 86.69 0.64 18.41 16 13 O -0.54 -21.30 13.74 16.91 0.23 -21.07 16 14 C -0.12 -2.97 5.89 -20.01 -0.12 -3.08 16 15 C -0.06 -1.01 9.54 22.52 0.21 -0.80 16 16 C -0.06 -0.95 9.53 22.24 0.21 -0.74 16 17 C -0.02 -0.30 6.85 36.41 0.25 -0.05 16 18 N 0.03 0.63 4.45 -46.39 -0.21 0.42 16 19 O -0.17 -4.23 18.43 18.88 0.35 -3.89 16 20 O -0.15 -3.61 18.43 18.89 0.35 -3.26 16 21 C -0.09 -1.64 9.48 22.34 0.21 -1.43 16 22 C 0.17 3.79 6.72 22.84 0.15 3.95 16 23 O -0.48 -11.24 11.58 -68.79 -0.80 -12.03 16 24 C 0.44 18.03 2.83 71.98 0.20 18.24 16 25 F -0.19 -7.32 16.93 44.97 0.76 -6.56 16 26 F -0.18 -7.90 16.89 44.97 0.76 -7.14 16 27 F -0.19 -7.95 15.85 44.97 0.71 -7.24 16 28 H 0.28 13.56 8.31 -92.70 -0.77 12.79 16 29 H 0.41 11.89 6.62 -92.71 -0.61 11.28 16 30 H 0.18 2.46 6.40 -2.91 -0.02 2.44 16 31 H 0.19 2.09 7.59 -2.91 -0.02 2.06 16 32 H 0.18 2.81 7.59 -2.91 -0.02 2.79 16 33 H 0.42 6.57 9.06 -74.06 -0.67 5.90 16 Total: -1.00 -61.44 315.40 4.59 -56.84 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.06 Total: 14.55 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 2.53 Total: 21.91 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -2.09 Total: -71.75 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: 0.13 Total: -40.24 kcal Atomic # 9 Polarization: -23.16 SS G_CDS: 2.23 Total: -20.93 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.85 Total: 39.62 kcal Total: -61.44 4.59 -56.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645934454.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.824 kcal (2) G-P(sol) polarization free energy of solvation -61.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds