Wall clock time and date at job start Tue Mar 31 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21587 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.47576 * 120.00140 * 180.02562 * 16 15 14 19 19 C 1.39734 * 120.13777 * 359.97438 * 18 16 15 20 20 C 1.37743 * 119.92773 * 180.02562 * 19 18 16 21 21 C 1.38742 * 120.20177 * 359.97438 * 20 19 18 22 22 F 1.35098 * 119.86018 * 180.02562 * 21 20 19 23 23 C 1.38587 * 120.27492 * 0.02562 * 21 20 19 24 24 Cl 1.73598 * 119.96294 * 179.97438 * 23 21 20 25 25 C 1.38298 * 120.07055 * 359.71908 * 23 21 20 26 26 F 1.35103 * 120.10024 * 180.30017 * 25 23 21 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.07997 * 120.03579 * 0.02562 * 19 18 16 36 36 H 1.07995 * 119.90272 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5108 -8.7421 0.3184 18 6 0.3594 -9.6441 0.2261 19 6 -1.0115 -9.3951 0.1203 20 6 -1.9028 -10.4453 0.1207 21 6 -1.4436 -11.7503 0.2254 22 9 -2.3238 -12.7752 0.2246 23 6 -0.0858 -12.0069 0.3307 24 17 0.4798 -13.6430 0.4620 25 6 0.8195 -10.9614 0.3261 26 9 2.1437 -11.2112 0.4227 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 -1.3718 -8.3803 0.0383 36 1 -2.9621 -10.2523 0.0385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699059283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:07 Heat of formation + Delta-G solvation = -138.909657 kcal Electronic energy + Delta-G solvation = -25139.652345 eV Core-core repulsion = 20707.414393 eV Total energy + Delta-G solvation = -4432.237952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.72916 -49.45672 -40.49763 -38.88572 -37.69132 -37.15528 -34.62491 -34.10052 -31.86644 -31.30465 -31.20512 -29.06047 -25.81184 -24.40325 -23.73341 -22.60245 -21.56577 -20.89215 -19.10299 -18.29684 -18.07498 -17.21609 -16.83186 -16.68638 -16.15885 -16.12774 -16.00727 -15.83988 -15.36681 -15.02758 -14.80549 -14.50923 -14.20555 -13.80165 -13.57228 -13.25682 -13.22578 -13.03325 -12.81657 -12.50187 -12.39978 -12.09897 -11.92328 -11.66886 -11.01405 -10.87187 -10.72936 -10.38152 -10.18349 -9.87678 -9.61115 -9.58274 -9.52855 -9.25921 -8.95961 -6.99491 -5.81336 -3.11174 -0.19963 0.14878 1.24364 2.08922 2.71543 2.98740 2.99052 3.40318 3.46106 3.48280 3.56442 3.85266 3.98757 4.12963 4.48170 4.59501 4.66221 4.79123 4.85765 5.07393 5.12686 5.14503 5.24442 5.50231 5.52583 5.67573 5.79459 5.85172 6.08289 6.19381 6.44425 6.59139 7.17004 7.64606 7.80902 7.88345 8.36731 9.48705 10.04286 10.39805 11.41022 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032541 B = 0.001959 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.259504 B =14288.767132 C =15026.704756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.089 3.911 15 N -0.711 5.711 16 C 0.557 3.443 17 O -0.521 6.521 18 C -0.170 4.170 19 C -0.021 4.021 20 C -0.158 4.158 21 C 0.165 3.835 22 F -0.112 7.112 23 C -0.133 4.133 24 Cl -0.021 7.021 25 C 0.200 3.800 26 F -0.091 7.091 27 H 0.255 0.745 28 H 0.388 0.612 29 H 0.030 0.970 30 H 0.024 0.976 31 H 0.374 0.626 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.405 0.595 35 H 0.158 0.842 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -26.876 -0.019 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.035 4.035 15 N -0.363 5.363 16 C 0.342 3.658 17 O -0.398 6.398 18 C -0.175 4.175 19 C -0.040 4.040 20 C -0.177 4.177 21 C 0.144 3.856 22 F -0.090 7.090 23 C -0.162 4.162 24 Cl 0.008 6.992 25 C 0.178 3.822 26 F -0.069 7.069 27 H 0.065 0.935 28 H 0.223 0.777 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.222 0.778 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.241 0.759 35 H 0.176 0.824 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.346 -27.011 0.474 27.363 hybrid contribution 0.308 0.525 -0.329 0.692 sum -4.039 -26.486 0.145 26.793 Atomic orbital electron populations 1.69682 1.05117 1.25622 1.57374 1.24766 0.95552 0.97776 1.02780 0.86105 0.78782 0.83983 0.77224 1.20526 1.21798 1.21808 1.19260 0.91049 0.84050 1.43129 0.91119 1.42237 1.06056 0.99397 1.89394 1.21197 0.93473 0.86514 0.98991 1.22417 0.94680 0.91718 0.88315 0.87578 1.86565 1.37585 1.96236 1.15445 1.22197 0.92101 0.85495 1.03685 1.45762 1.11446 1.05130 1.73988 1.17704 0.87685 0.82605 0.77772 1.90887 1.15727 1.84437 1.48748 1.20128 0.95117 0.92272 1.09959 1.21259 0.90253 1.00515 0.92000 1.21173 1.02525 0.89370 1.04653 1.17308 0.84446 0.85341 0.98467 1.91605 1.67102 1.57431 1.92907 1.20888 0.92615 0.88464 1.14187 1.98425 1.88928 1.15408 1.96413 1.17004 0.78448 0.90626 0.96101 1.91685 1.29025 1.94467 1.91698 0.93494 0.77733 0.95278 0.95819 0.77841 0.90599 0.89962 0.75889 0.82447 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.69 5.55 -59.91 -0.33 -18.02 16 10 C 0.13 2.31 5.90 -4.04 -0.02 2.29 16 11 C 0.09 1.22 3.09 -26.73 -0.08 1.13 16 12 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 13 O -0.55 -7.71 13.03 -35.23 -0.46 -8.17 16 14 C 0.09 1.04 5.34 -4.04 -0.02 1.01 16 15 N -0.71 -7.09 5.40 -61.34 -0.33 -7.42 16 16 C 0.56 6.52 7.76 -12.45 -0.10 6.42 16 17 O -0.52 -8.17 15.34 5.29 0.08 -8.09 16 18 C -0.17 -1.56 5.88 -104.91 -0.62 -2.18 16 19 C -0.02 -0.12 9.53 -39.20 -0.37 -0.50 16 20 C -0.16 -0.81 10.00 -39.58 -0.40 -1.21 16 21 C 0.17 1.20 7.28 -39.27 -0.29 0.91 16 22 F -0.11 -0.86 16.82 2.25 0.04 -0.82 16 23 C -0.13 -1.18 6.32 -39.43 -0.25 -1.43 16 24 Cl -0.02 -0.19 28.26 -51.86 -1.47 -1.65 16 25 C 0.20 2.06 7.26 -38.94 -0.28 1.77 16 26 F -0.09 -1.16 15.11 2.25 0.03 -1.12 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.39 10.10 7.67 -40.82 -0.31 9.79 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.37 4.29 9.05 45.56 0.41 4.70 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.12 6.37 -40.82 -0.26 2.86 16 35 H 0.16 0.51 6.40 -52.49 -0.34 0.17 16 36 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -33.73 341.68 -6.84 -40.57 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -2.58 Total: 8.61 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.68 Total: 0.94 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.06 Total: -52.48 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.38 Total: -16.26 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.07 Total: -1.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.47 Total: -1.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.73 -6.84 -40.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699059283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.338 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds