Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21587 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.47576 * 120.00140 * 180.02562 * 16 15 14 19 19 C 1.39734 * 120.13777 * 359.97438 * 18 16 15 20 20 C 1.37743 * 119.92773 * 180.02562 * 19 18 16 21 21 C 1.38742 * 120.20177 * 359.97438 * 20 19 18 22 22 F 1.35098 * 119.86018 * 180.02562 * 21 20 19 23 23 C 1.38587 * 120.27492 * 0.02562 * 21 20 19 24 24 Cl 1.73598 * 119.96294 * 179.97438 * 23 21 20 25 25 C 1.38298 * 120.07055 * 359.71908 * 23 21 20 26 26 F 1.35103 * 120.10024 * 180.30017 * 25 23 21 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.07997 * 120.03579 * 0.02562 * 19 18 16 36 36 H 1.07995 * 119.90272 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5108 -8.7421 0.3184 18 6 0.3594 -9.6441 0.2261 19 6 -1.0115 -9.3951 0.1203 20 6 -1.9028 -10.4453 0.1207 21 6 -1.4436 -11.7503 0.2254 22 9 -2.3238 -12.7752 0.2246 23 6 -0.0858 -12.0069 0.3307 24 17 0.4798 -13.6430 0.4620 25 6 0.8195 -10.9614 0.3261 26 9 2.1437 -11.2112 0.4227 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 -1.3718 -8.3803 0.0383 36 1 -2.9621 -10.2523 0.0385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699059283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = -164.771585 kcal Electronic energy + Delta-G solvation = -25140.773802 eV Core-core repulsion = 20707.414393 eV Total energy + Delta-G solvation = -4433.359409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.32192 -50.25404 -41.32346 -39.65373 -38.83076 -37.83242 -36.10182 -35.41521 -33.22526 -32.41177 -31.87926 -30.37699 -27.24199 -25.37279 -24.55441 -23.95825 -22.76156 -21.83009 -19.82264 -19.27055 -18.93483 -18.77484 -17.66384 -17.54096 -17.15114 -16.99887 -16.84144 -16.61078 -16.41948 -16.18761 -15.82551 -15.67425 -15.46116 -14.97470 -14.70574 -14.30658 -14.20213 -13.96923 -13.92273 -13.80968 -13.26791 -13.01956 -12.94869 -12.77978 -12.69925 -12.34801 -12.10772 -11.94707 -11.79438 -11.36672 -10.99506 -10.88628 -10.36617 -10.15944 -10.02532 -8.99251 -7.94265 -5.22999 -0.82983 -0.44353 0.59456 1.39509 1.49306 1.49330 1.59430 1.85937 2.25056 2.35909 2.56730 2.95176 3.25775 3.35269 3.38308 3.53627 3.55633 3.61644 4.01598 4.07289 4.23848 4.30148 4.41896 4.52830 4.63617 4.65096 4.71793 4.76016 4.97246 5.19799 5.24979 5.28504 5.50298 6.27630 6.35726 6.82114 7.02565 7.35090 8.10526 8.33359 9.28986 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032541 B = 0.001959 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.259504 B =14288.767132 C =15026.704756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.120 3.880 11 C 0.110 3.890 12 H 0.106 0.894 13 O -0.561 6.561 14 C 0.101 3.899 15 N -0.696 5.696 16 C 0.557 3.443 17 O -0.568 6.568 18 C -0.180 4.180 19 C -0.004 4.004 20 C -0.136 4.136 21 C 0.165 3.835 22 F -0.114 7.114 23 C -0.141 4.141 24 Cl -0.030 7.030 25 C 0.176 3.824 26 F -0.114 7.114 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.190 0.810 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -26.967 -0.269 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.007 4.007 11 C 0.050 3.950 12 H 0.124 0.876 13 O -0.367 6.367 14 C -0.024 4.024 15 N -0.349 5.349 16 C 0.344 3.656 17 O -0.448 6.448 18 C -0.184 4.184 19 C -0.022 4.022 20 C -0.154 4.154 21 C 0.145 3.855 22 F -0.092 7.092 23 C -0.170 4.170 24 Cl -0.001 7.001 25 C 0.154 3.846 26 F -0.092 7.092 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.235 0.765 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.207 0.793 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.542 -27.132 0.213 27.693 hybrid contribution 0.648 0.478 -0.269 0.849 sum -4.895 -26.653 -0.056 27.099 Atomic orbital electron populations 1.69822 1.06529 1.25993 1.59343 1.25558 0.96411 1.01070 1.03718 0.85095 0.78218 0.79916 0.76646 1.19139 1.22069 1.22068 1.19659 0.91490 0.85372 1.41251 0.90672 1.42413 1.05785 1.00716 1.89335 1.21425 0.94337 0.85795 0.99148 1.22082 0.93552 0.90905 0.88484 0.87599 1.86544 1.38056 1.96182 1.15938 1.21931 0.91975 0.84855 1.03620 1.45571 1.11913 1.04253 1.73189 1.18034 0.87465 0.83313 0.76750 1.90866 1.17847 1.85107 1.51027 1.20015 0.96106 0.90777 1.11539 1.21598 0.88472 1.02262 0.89904 1.21577 1.04185 0.87774 1.01896 1.17511 0.83667 0.86217 0.98148 1.91609 1.66906 1.57776 1.92867 1.20965 0.93266 0.87798 1.14962 1.98416 1.89201 1.15980 1.96518 1.17265 0.77787 0.91622 0.97893 1.91618 1.30714 1.94682 1.92227 0.93994 0.78997 0.94904 0.95148 0.76506 0.90531 0.90310 0.74265 0.79289 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.25 -13.34 9.99 84.03 0.84 -12.50 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.74 -35.58 5.55 -343.45 -1.91 -37.49 16 10 C 0.12 4.23 5.90 86.38 0.51 4.74 16 11 C 0.11 2.82 3.09 30.60 0.09 2.91 16 12 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 13 O -0.56 -14.40 13.03 -148.98 -1.94 -16.34 16 14 C 0.10 2.17 5.34 86.38 0.46 2.63 16 15 N -0.70 -12.43 5.40 -466.24 -2.52 -14.94 16 16 C 0.56 12.49 7.76 86.71 0.67 13.16 16 17 O -0.57 -18.02 15.34 -3.99 -0.06 -18.08 16 18 C -0.18 -3.04 5.88 -20.05 -0.12 -3.16 16 19 C 0.00 -0.03 9.53 22.51 0.21 0.18 16 20 C -0.14 -0.85 10.00 22.27 0.22 -0.63 16 21 C 0.17 2.03 7.28 22.47 0.16 2.19 16 22 F -0.11 -1.49 16.82 44.97 0.76 -0.73 16 23 C -0.14 -2.42 6.32 22.37 0.14 -2.28 16 24 Cl -0.03 -0.55 28.26 -2.72 -0.08 -0.63 16 25 C 0.18 3.60 7.26 22.68 0.16 3.76 16 26 F -0.11 -3.05 15.11 44.97 0.68 -2.37 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.38 19.57 7.67 -92.71 -0.71 18.86 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.39 7.99 9.05 -74.06 -0.67 7.32 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.42 5.09 6.37 -92.70 -0.59 4.49 16 35 H 0.19 0.27 6.40 -2.91 -0.02 0.25 16 36 H 0.20 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -74.11 341.68 0.29 -73.81 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.78 Total: 19.93 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 3.83 Total: 7.26 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.14 Total: -110.15 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -2.00 Total: -34.42 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 1.44 Total: -3.11 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -74.11 0.29 -73.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699059283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.959 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds