Wall clock time and date at job start Tue Mar 31 2020 18:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21585 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.47583 * 119.99884 * 179.97438 * 16 15 14 19 19 C 1.39734 * 120.13418 * 0.02562 * 18 16 15 20 20 C 1.37749 * 119.92197 * 179.97438 * 19 18 16 21 21 C 1.38737 * 120.20246 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.85867 * 180.02562 * 21 20 19 23 23 C 1.38581 * 120.27533 * 359.97438 * 21 20 19 24 24 Cl 1.73603 * 119.96411 * 179.97438 * 23 21 20 25 25 C 1.38295 * 120.07505 * 359.78902 * 23 21 20 26 26 F 1.35091 * 120.10725 * 180.25472 * 25 23 21 27 27 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 30 30 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 31 31 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 32 32 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 33 33 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 34 34 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 35 35 H 1.07996 * 120.04057 * 359.97438 * 19 18 16 36 36 H 1.08000 * 119.89823 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5238 -8.7497 -0.0654 18 6 0.3770 -9.6448 -0.2669 19 6 -0.9940 -9.3906 -0.3590 20 6 -1.8810 -10.4384 -0.4724 21 6 -1.4174 -11.7458 -0.4961 22 9 -2.2935 -12.7682 -0.6080 23 6 -0.0595 -12.0074 -0.4064 24 17 0.5117 -13.6465 -0.4361 25 6 0.8415 -10.9639 -0.2971 26 9 2.1658 -11.2179 -0.2148 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6854 -3.7149 0.8878 30 1 2.6841 -3.7141 -0.8921 31 1 0.7352 -4.7907 1.9961 32 1 2.5209 -6.1643 -0.8445 33 1 2.3866 -6.2426 0.9287 34 1 -0.0699 -7.0769 -0.1871 35 1 -1.3577 -8.3739 -0.3413 36 1 -2.9405 -10.2415 -0.5439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699059284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:12 Heat of formation + Delta-G solvation = -138.727053 kcal Electronic energy + Delta-G solvation = -25135.864889 eV Core-core repulsion = 20703.634855 eV Total energy + Delta-G solvation = -4432.230034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.72890 -49.46034 -40.49771 -38.88424 -37.68333 -37.15568 -34.63777 -34.07820 -31.86452 -31.30353 -31.19701 -29.05896 -25.81050 -24.40367 -23.73441 -22.60673 -21.56310 -20.88099 -19.10262 -18.29590 -18.07590 -17.20766 -16.83301 -16.68441 -16.16019 -16.13266 -16.00516 -15.83860 -15.35597 -15.03094 -14.79661 -14.51396 -14.19639 -13.80266 -13.57709 -13.25835 -13.22600 -13.04618 -12.79341 -12.50370 -12.39120 -12.10133 -11.91756 -11.66966 -11.00210 -10.85697 -10.72249 -10.38443 -10.20622 -9.87361 -9.59846 -9.58398 -9.52973 -9.26086 -8.94969 -6.99048 -5.80744 -3.10638 -0.20065 0.14748 1.24264 2.08803 2.71557 2.98454 2.99111 3.40839 3.46107 3.47758 3.56342 3.85079 3.98671 4.12784 4.47835 4.60406 4.66139 4.79181 4.85695 5.07160 5.13336 5.14667 5.24230 5.49980 5.52117 5.67534 5.79289 5.85371 6.08849 6.19823 6.44492 6.59724 7.16402 7.64395 7.82471 7.88490 8.37445 9.49330 10.05104 10.40884 11.41504 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.001958 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.017740 B =14297.588299 C =15030.211204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.090 3.910 15 N -0.711 5.711 16 C 0.557 3.443 17 O -0.521 6.521 18 C -0.170 4.170 19 C -0.021 4.021 20 C -0.158 4.158 21 C 0.165 3.835 22 F -0.112 7.112 23 C -0.133 4.133 24 Cl -0.021 7.021 25 C 0.200 3.800 26 F -0.091 7.091 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.375 0.625 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.404 0.596 35 H 0.158 0.842 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -26.815 -0.777 27.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.034 4.034 15 N -0.363 5.363 16 C 0.342 3.658 17 O -0.398 6.398 18 C -0.175 4.175 19 C -0.040 4.040 20 C -0.177 4.177 21 C 0.144 3.856 22 F -0.090 7.090 23 C -0.161 4.161 24 Cl 0.008 6.992 25 C 0.178 3.822 26 F -0.069 7.069 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.222 0.778 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.240 0.760 35 H 0.175 0.825 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.325 -26.974 -1.158 27.343 hybrid contribution 0.300 0.537 0.306 0.688 sum -4.024 -26.437 -0.852 26.755 Atomic orbital electron populations 1.69674 1.05110 1.25726 1.57272 1.24765 0.95548 0.97761 1.02767 0.86176 0.78646 0.83707 0.77547 1.21663 1.21714 1.20735 1.19214 0.91010 0.84066 1.43277 0.91191 1.42219 1.06108 0.99335 1.89398 1.21188 0.93481 0.86562 0.99002 1.22402 0.93354 0.91642 0.89717 0.87674 1.86566 1.37030 1.96415 1.15753 1.22211 0.92227 0.85525 1.03481 1.45779 1.11446 1.05072 1.74046 1.17709 0.87662 0.82602 0.77786 1.90886 1.15671 1.84381 1.48843 1.20131 0.95123 0.92262 1.09964 1.21256 0.90276 1.00533 0.91965 1.21174 1.02528 0.89356 1.04663 1.17305 0.84515 0.85377 0.98363 1.91607 1.67379 1.57634 1.92425 1.20886 0.92629 0.88410 1.14223 1.98426 1.88730 1.15099 1.96920 1.16999 0.78458 0.90611 0.96105 1.91681 1.29004 1.94391 1.91793 0.93449 0.77642 0.95849 0.95308 0.77776 0.89968 0.90587 0.75960 0.82462 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.68 5.49 -59.91 -0.33 -18.01 16 10 C 0.13 2.31 5.92 -4.04 -0.02 2.28 16 11 C 0.09 1.22 3.09 -26.73 -0.08 1.14 16 12 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 13 O -0.55 -7.85 13.03 -35.23 -0.46 -8.31 16 14 C 0.09 1.04 5.31 -4.04 -0.02 1.02 16 15 N -0.71 -7.09 5.45 -61.33 -0.33 -7.43 16 16 C 0.56 6.52 7.76 -12.45 -0.10 6.42 16 17 O -0.52 -8.17 15.34 5.29 0.08 -8.09 16 18 C -0.17 -1.56 5.88 -104.91 -0.62 -2.18 16 19 C -0.02 -0.12 9.53 -39.20 -0.37 -0.50 16 20 C -0.16 -0.81 10.00 -39.58 -0.40 -1.21 16 21 C 0.17 1.20 7.28 -39.27 -0.29 0.91 16 22 F -0.11 -0.86 16.82 2.25 0.04 -0.82 16 23 C -0.13 -1.18 6.32 -39.43 -0.25 -1.43 16 24 Cl -0.02 -0.19 28.26 -51.86 -1.47 -1.65 16 25 C 0.20 2.06 7.26 -38.94 -0.28 1.77 16 26 F -0.09 -1.15 15.11 2.25 0.03 -1.12 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 10.14 7.54 -40.82 -0.31 9.83 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.37 4.45 9.05 45.56 0.41 4.86 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 3.09 6.50 -40.82 -0.27 2.83 16 35 H 0.16 0.50 6.40 -52.49 -0.34 0.17 16 36 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -33.74 341.68 -6.84 -40.58 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -2.58 Total: 8.76 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.68 Total: 0.93 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.06 Total: -52.48 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.38 Total: -16.40 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.07 Total: -1.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.47 Total: -1.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.74 -6.84 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699059284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.146 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds