Wall clock time and date at job start Tue Mar 31 2020 18:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21585 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.47583 * 119.99884 * 179.97438 * 16 15 14 19 19 C 1.39734 * 120.13418 * 0.02562 * 18 16 15 20 20 C 1.37749 * 119.92197 * 179.97438 * 19 18 16 21 21 C 1.38737 * 120.20246 * 359.97438 * 20 19 18 22 22 F 1.35103 * 119.85867 * 180.02562 * 21 20 19 23 23 C 1.38581 * 120.27533 * 359.97438 * 21 20 19 24 24 Cl 1.73603 * 119.96411 * 179.97438 * 23 21 20 25 25 C 1.38295 * 120.07505 * 359.78902 * 23 21 20 26 26 F 1.35091 * 120.10725 * 180.25472 * 25 23 21 27 27 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 30 30 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 31 31 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 32 32 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 33 33 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 34 34 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 35 35 H 1.07996 * 120.04057 * 359.97438 * 19 18 16 36 36 H 1.08000 * 119.89823 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5238 -8.7497 -0.0654 18 6 0.3770 -9.6448 -0.2669 19 6 -0.9940 -9.3906 -0.3590 20 6 -1.8810 -10.4384 -0.4724 21 6 -1.4174 -11.7458 -0.4961 22 9 -2.2935 -12.7682 -0.6080 23 6 -0.0595 -12.0074 -0.4064 24 17 0.5117 -13.6465 -0.4361 25 6 0.8415 -10.9639 -0.2971 26 9 2.1658 -11.2179 -0.2148 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6854 -3.7149 0.8878 30 1 2.6841 -3.7141 -0.8921 31 1 0.7352 -4.7907 1.9961 32 1 2.5209 -6.1643 -0.8445 33 1 2.3866 -6.2426 0.9287 34 1 -0.0699 -7.0769 -0.1871 35 1 -1.3577 -8.3739 -0.3413 36 1 -2.9405 -10.2415 -0.5439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699059284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:11 Heat of formation + Delta-G solvation = -164.605750 kcal Electronic energy + Delta-G solvation = -25136.987074 eV Core-core repulsion = 20703.634855 eV Total energy + Delta-G solvation = -4433.352218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.32206 -50.25642 -41.32276 -39.65210 -38.83110 -37.83262 -36.08581 -35.42868 -33.21143 -32.41406 -31.87984 -30.37504 -27.23966 -25.37184 -24.55644 -23.95665 -22.75773 -21.82748 -19.82171 -19.26781 -18.93309 -18.77542 -17.66140 -17.54078 -17.16158 -16.99313 -16.83410 -16.60815 -16.42309 -16.18246 -15.82931 -15.67177 -15.46165 -14.97841 -14.70894 -14.29971 -14.18702 -13.96970 -13.92424 -13.81772 -13.26150 -13.02078 -12.94180 -12.74777 -12.69783 -12.34866 -12.15001 -11.94968 -11.78636 -11.37218 -10.98077 -10.87521 -10.36732 -10.15993 -10.02621 -8.98774 -7.93695 -5.22462 -0.83021 -0.44406 0.59397 1.39439 1.49347 1.50348 1.58780 1.86069 2.24981 2.35886 2.57047 2.95142 3.25942 3.35207 3.38505 3.51981 3.55754 3.62608 4.02892 4.07677 4.23204 4.30114 4.42447 4.52868 4.63595 4.64923 4.71706 4.75961 4.97021 5.18854 5.25572 5.29039 5.50201 6.27967 6.35339 6.81961 7.02229 7.35618 8.11352 8.34444 9.29306 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.001958 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.017740 B =14297.588299 C =15030.211204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.120 3.880 11 C 0.109 3.891 12 H 0.108 0.892 13 O -0.561 6.561 14 C 0.101 3.899 15 N -0.697 5.697 16 C 0.557 3.443 17 O -0.568 6.568 18 C -0.180 4.180 19 C -0.004 4.004 20 C -0.136 4.136 21 C 0.165 3.835 22 F -0.114 7.114 23 C -0.141 4.141 24 Cl -0.030 7.030 25 C 0.176 3.824 26 F -0.114 7.114 27 H 0.251 0.749 28 H 0.378 0.622 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.385 0.615 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.418 0.582 35 H 0.190 0.810 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 -26.880 -0.836 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.008 4.008 11 C 0.049 3.951 12 H 0.126 0.874 13 O -0.368 6.368 14 C -0.023 4.023 15 N -0.350 5.350 16 C 0.344 3.656 17 O -0.448 6.448 18 C -0.184 4.184 19 C -0.022 4.022 20 C -0.154 4.154 21 C 0.145 3.855 22 F -0.092 7.092 23 C -0.170 4.170 24 Cl -0.001 7.001 25 C 0.154 3.846 26 F -0.092 7.092 27 H 0.060 0.940 28 H 0.211 0.789 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.234 0.766 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.257 0.743 35 H 0.207 0.793 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.543 -27.068 -1.212 27.656 hybrid contribution 0.648 0.483 0.329 0.873 sum -4.895 -26.585 -0.883 27.046 Atomic orbital electron populations 1.69819 1.06521 1.26054 1.59251 1.25557 0.96404 1.01060 1.03693 0.85163 0.77695 0.79606 0.77411 1.21433 1.22230 1.19540 1.19623 0.91477 0.85393 1.41414 0.90709 1.42388 1.05830 1.00647 1.89341 1.21414 0.94350 0.85856 0.99142 1.22094 0.92281 0.90806 0.89873 0.87418 1.86546 1.37466 1.96375 1.16363 1.21943 0.92063 0.84877 1.03466 1.45586 1.11937 1.04195 1.73241 1.18039 0.87437 0.83310 0.76774 1.90865 1.17794 1.85052 1.51125 1.20018 0.96124 0.90767 1.11537 1.21601 0.88487 1.02301 0.89850 1.21579 1.04189 0.87760 1.01906 1.17509 0.83736 0.86259 0.98041 1.91610 1.67183 1.57982 1.92386 1.20964 0.93284 0.87741 1.15001 1.98417 1.89007 1.15678 1.97019 1.17261 0.77797 0.91607 0.97902 1.91615 1.30696 1.94608 1.92320 0.93997 0.78912 0.95241 0.94903 0.76561 0.90254 0.90589 0.74302 0.79270 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.98 13.06 21.65 0.28 -57.70 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -35.55 5.49 -343.46 -1.89 -37.43 16 10 C 0.12 4.22 5.92 86.38 0.51 4.73 16 11 C 0.11 2.81 3.09 30.60 0.09 2.90 16 12 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 13 O -0.56 -14.79 13.03 -148.98 -1.94 -16.73 16 14 C 0.10 2.18 5.31 86.38 0.46 2.64 16 15 N -0.70 -12.43 5.45 -466.22 -2.54 -14.97 16 16 C 0.56 12.50 7.76 86.71 0.67 13.17 16 17 O -0.57 -18.02 15.34 -3.98 -0.06 -18.09 16 18 C -0.18 -3.04 5.88 -20.05 -0.12 -3.16 16 19 C 0.00 -0.03 9.53 22.52 0.21 0.18 16 20 C -0.14 -0.85 10.00 22.27 0.22 -0.63 16 21 C 0.17 2.03 7.28 22.47 0.16 2.19 16 22 F -0.11 -1.49 16.82 44.97 0.76 -0.73 16 23 C -0.14 -2.42 6.32 22.37 0.14 -2.28 16 24 Cl -0.03 -0.55 28.26 -2.72 -0.08 -0.63 16 25 C 0.18 3.60 7.26 22.68 0.16 3.76 16 26 F -0.11 -3.05 15.11 44.97 0.68 -2.37 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.38 19.62 7.54 -92.71 -0.70 18.92 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.39 8.39 9.05 -74.06 -0.67 7.72 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.42 5.02 6.50 -92.71 -0.60 4.42 16 35 H 0.19 0.25 6.40 -2.91 -0.02 0.23 16 36 H 0.20 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -74.14 341.68 0.29 -73.85 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.78 Total: 20.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 3.83 Total: 7.20 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.15 Total: -110.10 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -2.00 Total: -34.82 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 1.44 Total: -3.11 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -74.14 0.29 -73.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699059284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.758 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds