Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21571 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.47650 * 119.99943 * 179.97438 * 16 15 14 19 19 C 1.39714 * 120.11714 * 0.02562 * 18 16 15 20 20 C 1.37972 * 119.86244 * 179.97438 * 19 18 16 21 21 F 1.35099 * 119.94743 * 180.02562 * 20 19 18 22 22 C 1.38911 * 120.11062 * 359.97160 * 20 19 18 23 23 F 1.35098 * 119.87854 * 180.02562 * 22 20 19 24 24 C 1.38501 * 120.24557 * 0.04604 * 22 20 19 25 25 C 1.38055 * 120.13125 * 359.70132 * 24 22 20 26 26 Cl 1.73609 * 120.05641 * 180.29761 * 25 24 22 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 30 30 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 31 31 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 32 32 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 33 33 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 34 34 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 35 35 H 1.07995 * 120.07427 * 359.94980 * 19 18 16 36 36 H 1.07999 * 119.93611 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3974 -6.2136 -2.2527 18 6 -0.5064 -4.7060 -4.0326 19 6 -0.1149 -3.4650 -4.5412 20 6 -0.5385 -3.0713 -5.7938 21 9 -0.1606 -1.8719 -6.2875 22 6 -1.3522 -3.9066 -6.5487 23 9 -1.7638 -3.5166 -7.7750 24 6 -1.7433 -5.1376 -6.0488 25 6 -1.3210 -5.5439 -4.7988 26 17 -1.8061 -7.0906 -4.1773 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 3.0424 -4.9392 1.4103 30 1 2.9715 -3.2265 1.8893 31 1 1.3828 -4.5515 3.0838 32 1 1.7556 -5.6709 -0.7154 33 1 0.3131 -4.9201 0.0085 34 1 1.0063 -3.4630 -2.3094 35 1 0.5177 -2.8150 -3.9549 36 1 -2.3762 -5.7829 -6.6399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700807154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = -130.320675 kcal Electronic energy + Delta-G solvation = -26168.069608 eV Core-core repulsion = 21736.204102 eV Total energy + Delta-G solvation = -4431.865506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.77128 -48.82256 -40.22295 -38.36149 -37.09516 -36.54165 -34.97047 -33.63515 -31.95417 -31.02508 -30.54669 -28.34995 -25.67092 -24.15980 -23.71871 -23.05734 -20.57923 -20.16152 -18.66076 -17.84925 -17.73875 -17.36803 -16.66479 -16.63915 -16.54105 -15.67066 -15.23627 -15.14691 -14.98229 -14.75710 -14.59401 -14.16771 -13.83068 -13.65976 -13.51263 -13.22079 -13.12106 -12.86426 -12.76649 -12.02994 -11.93011 -11.50216 -11.32948 -11.26003 -10.92626 -10.87139 -10.62566 -10.17545 -9.83639 -9.53721 -9.49548 -9.39570 -9.03130 -8.95743 -8.65422 -7.10135 -5.86560 -3.17619 0.15071 0.49949 1.81903 2.45948 3.22417 3.36297 3.40502 3.41797 3.43321 3.44051 3.92428 4.11684 4.44251 4.48749 4.66912 4.88495 4.96598 5.22503 5.27501 5.34508 5.37780 5.46912 5.50633 5.60039 5.83970 5.96613 5.99390 6.19113 6.28436 6.45627 6.67380 6.76028 7.57288 7.74881 8.16438 8.30146 8.37243 9.42680 9.96870 10.33393 11.34644 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004113 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.330880 B = 6806.794628 C = 9094.913498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.164 3.836 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.703 5.703 16 C 0.550 3.450 17 O -0.520 6.520 18 C -0.102 4.102 19 C -0.077 4.077 20 C 0.070 3.930 21 F -0.118 7.118 22 C 0.101 3.899 23 F -0.119 7.119 24 C -0.131 4.131 25 C 0.026 3.974 26 Cl -0.009 7.009 27 H 0.257 0.743 28 H 0.389 0.611 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.364 0.636 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.166 0.834 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -11.700 -10.212 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.053 3.947 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.005 4.005 15 N -0.356 5.356 16 C 0.335 3.665 17 O -0.398 6.398 18 C -0.107 4.107 19 C -0.097 4.097 20 C 0.050 3.950 21 F -0.096 7.096 22 C 0.080 3.920 23 F -0.097 7.097 24 C -0.151 4.151 25 C -0.003 4.003 26 Cl 0.020 6.980 27 H 0.067 0.933 28 H 0.224 0.776 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.209 0.791 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.183 0.817 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.615 -12.230 -10.472 16.112 hybrid contribution 0.580 1.626 0.205 1.738 sum -0.036 -10.604 -10.267 14.760 Atomic orbital electron populations 1.69661 1.05093 1.25961 1.56455 1.24742 0.95434 0.97643 1.02418 0.86315 0.78583 0.83655 0.77843 1.21183 1.21678 1.21304 1.19159 0.90893 0.84010 1.44209 0.91212 1.42383 1.06057 0.99030 1.88092 1.20611 0.95034 0.87000 0.92027 0.91584 1.23019 0.86534 0.97290 0.95338 1.86566 1.32127 1.91680 1.25980 1.21616 0.99761 0.97008 0.82068 1.45923 1.49980 1.21400 1.18248 1.17736 0.79704 0.85000 0.84041 1.90862 1.55960 1.21356 1.71578 1.19806 1.00302 0.94050 0.96504 1.21385 0.99033 0.95795 0.93441 1.17490 1.00394 0.83237 0.93895 1.91596 1.89417 1.41321 1.87276 1.17603 0.98383 0.94016 0.82033 1.91570 1.88315 1.90768 1.39048 1.20840 1.03085 0.95506 0.95669 1.20686 0.96610 0.89987 0.92971 1.98442 1.89315 1.23646 1.86559 0.93295 0.77650 0.95488 0.93282 0.79097 0.91705 0.90183 0.75479 0.81687 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 13.06 55.49 0.72 -25.77 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.36 9.93 -15.06 -0.15 -6.51 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.71 -16.16 4.51 -53.42 -0.24 -16.40 16 10 C 0.16 2.93 2.84 -67.93 -0.19 2.74 16 11 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 12 C 0.06 0.98 6.86 37.16 0.25 1.23 16 13 O -0.56 -9.56 12.64 -35.23 -0.45 -10.00 16 14 C 0.12 1.97 5.12 -4.04 -0.02 1.95 16 15 N -0.70 -11.11 5.34 -61.31 -0.33 -11.44 16 16 C 0.55 8.70 7.76 -12.42 -0.10 8.61 16 17 O -0.52 -9.30 13.96 5.30 0.07 -9.23 16 18 C -0.10 -1.38 5.88 -104.94 -0.62 -2.00 16 19 C -0.08 -0.96 9.51 -39.13 -0.37 -1.33 16 20 C 0.07 0.87 7.30 -39.43 -0.29 0.58 16 21 F -0.12 -1.59 17.17 2.25 0.04 -1.55 16 22 C 0.10 1.13 7.31 -39.24 -0.29 0.84 16 23 F -0.12 -1.35 17.17 2.25 0.04 -1.32 16 24 C -0.13 -1.33 9.79 -39.55 -0.39 -1.72 16 25 C 0.03 0.32 6.35 -39.09 -0.25 0.07 16 26 Cl -0.01 -0.12 26.01 -51.86 -1.35 -1.47 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.39 9.84 7.80 -40.82 -0.32 9.52 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.36 4.44 9.12 45.56 0.42 4.86 16 32 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 33 H 0.08 1.50 7.39 -51.93 -0.38 1.12 16 34 H 0.41 6.37 6.17 -40.82 -0.25 6.11 16 35 H 0.17 2.01 6.40 -52.49 -0.34 1.67 16 36 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -30.32 338.45 -6.44 -36.76 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -2.53 Total: 14.91 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.50 Total: 4.23 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.16 Total: -53.61 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.37 Total: -19.23 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.35 Total: -1.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.32 -6.44 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700807154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.556 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds