Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21571 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.47650 * 119.99943 * 179.97438 * 16 15 14 19 19 C 1.39714 * 120.11714 * 0.02562 * 18 16 15 20 20 C 1.37972 * 119.86244 * 179.97438 * 19 18 16 21 21 F 1.35099 * 119.94743 * 180.02562 * 20 19 18 22 22 C 1.38911 * 120.11062 * 359.97160 * 20 19 18 23 23 F 1.35098 * 119.87854 * 180.02562 * 22 20 19 24 24 C 1.38501 * 120.24557 * 0.04604 * 22 20 19 25 25 C 1.38055 * 120.13125 * 359.70132 * 24 22 20 26 26 Cl 1.73609 * 120.05641 * 180.29761 * 25 24 22 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 30 30 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 31 31 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 32 32 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 33 33 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 34 34 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 35 35 H 1.07995 * 120.07427 * 359.94980 * 19 18 16 36 36 H 1.07999 * 119.93611 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3974 -6.2136 -2.2527 18 6 -0.5064 -4.7060 -4.0326 19 6 -0.1149 -3.4650 -4.5412 20 6 -0.5385 -3.0713 -5.7938 21 9 -0.1606 -1.8719 -6.2875 22 6 -1.3522 -3.9066 -6.5487 23 9 -1.7638 -3.5166 -7.7750 24 6 -1.7433 -5.1376 -6.0488 25 6 -1.3210 -5.5439 -4.7988 26 17 -1.8061 -7.0906 -4.1773 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 3.0424 -4.9392 1.4103 30 1 2.9715 -3.2265 1.8893 31 1 1.3828 -4.5515 3.0838 32 1 1.7556 -5.6709 -0.7154 33 1 0.3131 -4.9201 0.0085 34 1 1.0063 -3.4630 -2.3094 35 1 0.5177 -2.8150 -3.9549 36 1 -2.3762 -5.7829 -6.6399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700807154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = -152.204933 kcal Electronic energy + Delta-G solvation = -26169.018581 eV Core-core repulsion = 21736.204102 eV Total energy + Delta-G solvation = -4432.814478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.73982 -49.80741 -41.36764 -39.50689 -38.47641 -37.53209 -36.37387 -35.23997 -33.39471 -32.31448 -31.56582 -29.98281 -26.92425 -25.65466 -25.11287 -24.12410 -21.77058 -21.58300 -19.80322 -19.30979 -18.79596 -18.58444 -18.10888 -17.67203 -17.60719 -17.06232 -16.49973 -16.25001 -16.18322 -15.99581 -15.75638 -15.47239 -15.28607 -14.87717 -14.78533 -14.56788 -14.37665 -14.06213 -14.03185 -13.56854 -13.00906 -12.89286 -12.72058 -12.62009 -12.34434 -12.32909 -12.24813 -11.87017 -11.70723 -10.97780 -10.72727 -10.67836 -10.44473 -10.08826 -9.82797 -8.98574 -7.88442 -5.17201 -0.85505 -0.44001 0.84099 1.40742 1.51947 1.52608 1.58701 2.04593 2.30035 2.43659 2.59235 2.95671 3.17260 3.38889 3.45880 3.64689 3.71386 3.93269 3.96457 4.04337 4.24147 4.34655 4.45538 4.48232 4.60387 4.62347 4.66617 4.90675 5.03261 5.23800 5.26639 5.44903 5.57652 6.30348 6.48076 7.08594 7.12240 7.39273 8.11770 8.36688 9.33888 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004113 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.330880 B = 6806.794628 C = 9094.913498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.304 1.304 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.722 5.722 10 C 0.159 3.841 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.131 3.869 15 N -0.704 5.704 16 C 0.550 3.450 17 O -0.543 6.543 18 C -0.114 4.114 19 C -0.074 4.074 20 C 0.062 3.938 21 F -0.126 7.126 22 C 0.110 3.890 23 F -0.116 7.116 24 C -0.111 4.111 25 C 0.024 3.976 26 Cl -0.014 7.014 27 H 0.248 0.752 28 H 0.373 0.627 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.164 0.836 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -12.640 -11.082 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.390 6.390 14 C 0.007 3.993 15 N -0.355 5.355 16 C 0.336 3.664 17 O -0.423 6.423 18 C -0.119 4.119 19 C -0.093 4.093 20 C 0.042 3.958 21 F -0.105 7.105 22 C 0.089 3.911 23 F -0.095 7.095 24 C -0.131 4.131 25 C -0.005 4.005 26 Cl 0.016 6.984 27 H 0.057 0.943 28 H 0.205 0.795 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.182 0.818 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.377 -13.209 -11.331 17.407 hybrid contribution 0.312 1.804 0.465 1.889 sum 0.689 -11.405 -10.866 15.768 Atomic orbital electron populations 1.69821 1.06562 1.25778 1.59360 1.25415 0.96039 1.00601 1.03958 0.85364 0.77178 0.79975 0.78096 1.20141 1.23097 1.20938 1.19558 0.91473 0.84808 1.40943 0.90075 1.42485 1.05400 1.00172 1.88197 1.20884 0.95219 0.85331 0.93560 0.90095 1.22872 0.86550 0.98560 0.93672 1.86521 1.32861 1.91846 1.27806 1.21445 0.98713 0.97251 0.81911 1.45911 1.50137 1.21460 1.18032 1.18028 0.79109 0.84564 0.84693 1.90844 1.56782 1.22282 1.72346 1.19628 1.01638 0.94839 0.95749 1.21285 0.99036 0.95460 0.93566 1.17575 1.00988 0.83211 0.94060 1.91575 1.89622 1.41922 1.87351 1.17602 0.97690 0.93973 0.81839 1.91584 1.88185 1.90780 1.38903 1.21053 1.02131 0.95108 0.94764 1.20776 0.96518 0.89670 0.93529 1.98443 1.89294 1.23898 1.86759 0.94333 0.79505 0.91565 0.94671 0.76705 0.89736 0.92613 0.75408 0.81841 0.78902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.43 13.06 21.65 0.28 -56.14 16 2 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 3 Si 0.96 43.72 29.55 68.60 2.03 45.75 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -11.77 9.93 84.04 0.83 -10.93 16 8 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.72 -32.53 4.51 -322.93 -1.46 -33.98 16 10 C 0.16 5.45 2.84 44.99 0.13 5.58 16 11 H 0.08 2.55 8.08 -2.39 -0.02 2.53 16 12 C 0.06 1.97 6.86 71.98 0.49 2.47 16 13 O -0.58 -19.19 12.64 -148.98 -1.88 -21.07 16 14 C 0.13 4.20 5.12 86.38 0.44 4.64 16 15 N -0.70 -21.98 5.34 -466.15 -2.49 -24.47 16 16 C 0.55 17.19 7.76 86.73 0.67 17.86 16 17 O -0.54 -19.21 13.96 -3.94 -0.06 -19.26 16 18 C -0.11 -3.00 5.88 -20.07 -0.12 -3.12 16 19 C -0.07 -1.81 9.51 22.56 0.21 -1.60 16 20 C 0.06 1.47 7.30 22.37 0.16 1.64 16 21 F -0.13 -3.33 17.17 44.97 0.77 -2.56 16 22 C 0.11 2.25 7.31 22.49 0.16 2.41 16 23 F -0.12 -2.40 17.17 44.97 0.77 -1.62 16 24 C -0.11 -1.99 9.79 22.29 0.22 -1.77 16 25 C 0.02 0.54 6.35 22.59 0.14 0.69 16 26 Cl -0.01 -0.33 26.01 -2.72 -0.07 -0.40 16 27 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 28 H 0.37 19.17 7.80 -92.71 -0.72 18.45 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.39 8.79 9.12 -74.06 -0.68 8.11 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.06 2.09 7.39 -2.39 -0.02 2.07 16 34 H 0.41 12.71 6.17 -92.71 -0.57 12.13 16 35 H 0.16 4.00 6.40 -2.91 -0.02 3.98 16 36 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -64.76 338.45 0.95 -63.81 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.78 Total: 35.23 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 3.82 Total: 14.73 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -3.66 Total: -114.60 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.94 Total: -40.33 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.54 Total: -4.18 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.07 Total: -0.40 kcal Total: -64.76 0.95 -63.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700807154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.391 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds