Wall clock time and date at job start Tue Mar 31 2020 18:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00226 * 2 1 4 4 H 1.48494 * 109.47246 * 270.00273 * 3 2 1 5 5 H 1.48503 * 109.47124 * 29.99817 * 3 2 1 6 6 H 1.48497 * 109.47148 * 149.99475 * 3 2 1 7 7 C 1.38815 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00378 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99555 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99694 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46989 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47069 * 59.99820 * 11 10 9 13 13 O 1.42896 * 109.47132 * 300.00189 * 11 10 9 14 14 C 1.53002 * 109.47355 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47405 * 184.99874 * 14 11 10 16 16 C 1.34772 * 120.00182 * 179.97438 * 15 14 11 17 17 O 1.21580 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.47651 * 120.00095 * 180.02562 * 16 15 14 19 19 C 1.39709 * 120.12051 * 0.02562 * 18 16 15 20 20 C 1.37967 * 119.86086 * 180.02562 * 19 18 16 21 21 F 1.35107 * 119.93942 * 180.02562 * 20 19 18 22 22 C 1.38903 * 120.11541 * 0.02562 * 20 19 18 23 23 F 1.35100 * 119.88289 * 179.97438 * 22 20 19 24 24 C 1.38505 * 120.24371 * 359.97438 * 22 20 19 25 25 C 1.38057 * 120.13536 * 359.97438 * 24 22 20 26 26 Cl 1.73592 * 120.05837 * 179.97438 * 25 24 22 27 27 H 0.97003 * 120.00177 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99916 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47123 * 59.99902 * 10 9 7 30 30 H 1.09001 * 109.47195 * 299.99162 * 10 9 7 31 31 H 0.96696 * 113.99889 * 299.99231 * 13 11 10 32 32 H 1.09004 * 109.46712 * 64.99959 * 14 11 10 33 33 H 1.09002 * 109.46994 * 305.00202 * 14 11 10 34 34 H 0.96998 * 119.99808 * 0.02562 * 15 14 11 35 35 H 1.08003 * 120.06524 * 0.04171 * 19 18 16 36 36 H 1.08008 * 119.93557 * 179.72335 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 1 5.8796 -1.6198 0.8900 13 8 5.9615 -1.4421 -1.1667 14 6 6.3813 -3.5164 0.0006 15 7 7.8171 -3.2514 0.1210 16 6 8.6920 -4.2762 0.1435 17 8 8.2898 -5.4208 0.0634 18 6 10.1390 -4.0091 0.2653 19 6 10.6040 -2.6949 0.3580 20 6 11.9573 -2.4513 0.4712 21 9 12.4086 -1.1811 0.5615 22 6 12.8565 -3.5098 0.4925 23 9 14.1807 -3.2660 0.6029 24 6 12.4005 -4.8145 0.4009 25 6 11.0485 -5.0699 0.2884 26 17 10.4793 -6.7058 0.1730 27 1 -0.4850 0.8401 -0.0004 28 1 3.8645 -0.3622 0.0004 29 1 3.8490 -3.0423 -0.8902 30 1 3.8484 -3.0427 0.8898 31 1 5.7548 -1.8909 -1.9979 32 1 6.1869 -4.0486 -0.9306 33 1 6.0524 -4.1255 0.8427 34 1 8.1380 -2.3382 0.1852 35 1 9.9054 -1.8713 0.3414 36 1 13.1045 -5.6335 0.4134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716110259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:56 Heat of formation + Delta-G solvation = -154.892083 kcal Electronic energy + Delta-G solvation = -25241.345856 eV Core-core repulsion = 20808.414854 eV Total energy + Delta-G solvation = -4432.931002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.74421 -49.81266 -41.44837 -39.65886 -38.79562 -37.55490 -36.19325 -35.41394 -33.48695 -32.72402 -31.61466 -30.67492 -27.38683 -25.38474 -24.52092 -23.69293 -22.83519 -21.82294 -19.97674 -19.65983 -18.85613 -18.72003 -17.82414 -17.62163 -17.42089 -17.19811 -16.52543 -16.43041 -16.20719 -15.99139 -15.89102 -15.66452 -15.44427 -15.12936 -14.83009 -14.53726 -14.39963 -14.20991 -14.08163 -13.83776 -13.33360 -13.14899 -12.90520 -12.80115 -12.38917 -12.34794 -12.21318 -11.86128 -11.82157 -11.09771 -11.00214 -10.75076 -10.47147 -10.20935 -9.87525 -9.30496 -8.02835 -5.36486 -0.87931 -0.45103 0.83840 1.37151 1.40672 1.43835 1.51125 1.87744 2.24858 2.42711 2.49496 2.94089 3.13551 3.27914 3.31955 3.40290 3.56957 3.68702 3.94759 4.01274 4.10997 4.18048 4.23702 4.32633 4.44597 4.61282 4.63614 4.78257 4.95427 5.18571 5.22110 5.28276 5.74996 6.20733 6.37471 6.78219 7.05467 7.08880 7.84361 8.03299 9.18497 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.002423 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.936256 B =11555.273889 C =12971.953396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.237 4.237 8 H 0.057 0.943 9 N -0.753 5.753 10 C 0.123 3.877 11 C 0.104 3.896 12 H 0.112 0.888 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.704 5.704 16 C 0.553 3.447 17 O -0.541 6.541 18 C -0.115 4.115 19 C -0.067 4.067 20 C 0.064 3.936 21 F -0.124 7.124 22 C 0.107 3.893 23 F -0.119 7.119 24 C -0.116 4.116 25 C 0.021 3.979 26 Cl -0.019 7.019 27 H 0.258 0.742 28 H 0.370 0.630 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.389 0.611 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.414 0.586 35 H 0.182 0.818 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.121 -9.006 0.612 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.367 4.367 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.004 4.004 11 C 0.044 3.956 12 H 0.129 0.871 13 O -0.371 6.371 14 C -0.022 4.022 15 N -0.357 5.357 16 C 0.340 3.660 17 O -0.419 6.419 18 C -0.119 4.119 19 C -0.087 4.087 20 C 0.043 3.957 21 F -0.102 7.102 22 C 0.086 3.914 23 F -0.098 7.098 24 C -0.136 4.136 25 C -0.008 4.008 26 Cl 0.011 6.989 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.238 0.762 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.252 0.748 35 H 0.200 0.800 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 31.823 -9.592 0.991 33.252 hybrid contribution 0.005 1.101 -0.310 1.144 sum 31.828 -8.491 0.681 32.948 Atomic orbital electron populations 1.69891 1.07221 1.26764 1.59589 1.25541 0.96125 1.01450 1.02558 0.85335 0.78524 0.79348 0.78064 1.20563 1.22459 1.17515 1.19041 0.82783 0.93457 1.41467 0.92535 1.42541 1.02273 1.04164 1.90933 1.21404 0.91141 0.88089 0.99802 1.22167 0.91659 0.91741 0.90008 0.87055 1.86520 1.85740 1.48264 1.16537 1.21914 0.79364 0.97199 1.03772 1.45679 1.06496 1.09857 1.73636 1.18001 0.85574 0.85147 0.77315 1.90909 1.79728 1.21559 1.49730 1.19571 0.93572 0.92469 1.06334 1.21331 0.93735 0.96991 0.96602 1.17560 0.92343 0.78927 1.06830 1.91592 1.89492 1.35516 1.93645 1.17710 0.77952 0.92870 1.02866 1.91591 1.30257 1.94926 1.92979 1.21042 0.94610 0.96107 1.01796 1.20831 0.92665 0.87825 0.99435 1.98462 1.89052 1.15957 1.95411 0.93317 0.79663 0.94650 0.94374 0.76197 0.90275 0.89989 0.74828 0.80042 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.74 13.97 21.65 0.30 -62.44 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.96 45.05 27.74 68.60 1.90 46.95 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 7 C -0.24 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.75 -33.29 5.30 -343.45 -1.82 -35.11 16 10 C 0.12 4.04 5.92 86.38 0.51 4.55 16 11 C 0.10 2.37 3.08 30.60 0.09 2.47 16 12 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 13 O -0.56 -12.93 13.03 -148.98 -1.94 -14.87 16 14 C 0.10 1.93 5.31 86.38 0.46 2.39 16 15 N -0.70 -11.22 5.45 -466.15 -2.54 -13.76 16 16 C 0.55 10.58 7.76 86.73 0.67 11.25 16 17 O -0.54 -13.94 13.96 -3.97 -0.06 -13.99 16 18 C -0.12 -1.71 5.88 -20.07 -0.12 -1.83 16 19 C -0.07 -0.73 9.51 22.56 0.21 -0.52 16 20 C 0.06 0.81 7.29 22.36 0.16 0.97 16 21 F -0.12 -1.86 17.17 44.97 0.77 -1.09 16 22 C 0.11 1.31 7.31 22.49 0.16 1.48 16 23 F -0.12 -1.66 17.17 44.97 0.77 -0.89 16 24 C -0.12 -1.24 9.79 22.29 0.22 -1.02 16 25 C 0.02 0.31 6.35 22.59 0.14 0.45 16 26 Cl -0.02 -0.34 26.01 -2.72 -0.07 -0.41 16 27 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.37 15.82 5.40 -92.71 -0.50 15.32 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.39 7.13 9.05 -74.06 -0.67 6.46 16 32 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.41 4.78 6.50 -92.71 -0.60 4.18 16 35 H 0.18 1.11 6.40 -2.91 -0.02 1.10 16 36 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -72.70 337.21 0.55 -72.15 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.64 Total: 18.94 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 3.87 Total: 4.51 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.06 Total: -111.31 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.00 Total: -28.86 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 1.54 Total: -1.98 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.07 Total: -0.41 kcal Total: -72.70 0.55 -72.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716110259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.740 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds