Wall clock time and date at job start Tue Mar 31 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21580 * 120.00384 * 359.97438 * 16 15 14 18 18 C 1.47572 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.39745 * 120.13838 * 359.97438 * 18 16 15 20 20 C 1.37742 * 119.92547 * 180.02562 * 19 18 16 21 21 C 1.38737 * 120.20630 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.86313 * 180.02562 * 21 20 19 23 23 C 1.38588 * 120.27323 * 0.02562 * 21 20 19 24 24 Cl 1.73600 * 119.96155 * 179.97438 * 23 21 20 25 25 C 1.38294 * 120.07078 * 359.71432 * 23 21 20 26 26 F 1.35101 * 120.10129 * 180.30395 * 25 23 21 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 30 30 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 31 31 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 32 32 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 33 33 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 34 34 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 35 35 H 1.07999 * 120.03222 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.89984 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5622 -3.2053 0.5994 12 6 4.2641 -2.9783 -1.4246 13 8 5.0834 -2.0720 -2.1659 14 6 5.4967 -2.2577 0.6257 15 7 5.3536 -1.6600 1.9556 16 6 6.4486 -1.3804 2.6900 17 8 7.5550 -1.6246 2.2491 18 6 6.3045 -0.7778 4.0294 19 6 5.0342 -0.4955 4.5387 20 6 4.9048 0.0675 5.7892 21 6 6.0320 0.3547 6.5454 22 9 5.8970 0.9064 7.7712 23 6 7.2958 0.0782 6.0484 24 17 8.7007 0.4416 7.0013 25 6 7.4387 -0.4919 4.7966 26 9 8.6701 -0.7674 4.3141 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7298 -3.9637 -1.4143 30 1 3.2818 -3.0456 -1.8922 31 1 5.2233 -2.3315 -3.0869 32 1 6.0078 -3.2167 0.7115 33 1 6.0786 -1.5916 -0.0114 34 1 4.4709 -1.4648 2.3072 35 1 4.1549 -0.7184 3.9525 36 1 3.9228 0.2852 6.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717775552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:16 Heat of formation + Delta-G solvation = -132.888800 kcal Electronic energy + Delta-G solvation = -26215.880977 eV Core-core repulsion = 21783.904108 eV Total energy + Delta-G solvation = -4431.976868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.51064 -49.23462 -40.18599 -38.58395 -37.32769 -36.94795 -35.14412 -33.76325 -31.92999 -31.09959 -30.98652 -28.92059 -25.79447 -24.09577 -23.55065 -23.17640 -20.71601 -20.26944 -18.84912 -18.19834 -17.91331 -17.44177 -16.95440 -16.59525 -16.26759 -15.78473 -15.72948 -15.59754 -15.14220 -14.80116 -14.63667 -14.40866 -13.81756 -13.56762 -13.33827 -13.20286 -13.00729 -12.98989 -12.91298 -12.49420 -12.19021 -11.89588 -11.66657 -11.48028 -11.09496 -10.94596 -10.80547 -10.21945 -9.99395 -9.73757 -9.53917 -9.33729 -9.27648 -9.09604 -8.85681 -7.45269 -5.91972 -3.29187 0.05921 0.39682 1.43915 2.36444 3.07111 3.24121 3.27567 3.29083 3.34447 3.39376 3.81030 4.12631 4.28648 4.43002 4.46768 4.73903 4.94385 5.08398 5.12079 5.25390 5.34865 5.36985 5.44333 5.53664 5.72151 5.82540 5.84499 6.04382 6.10869 6.29518 6.50341 6.59416 7.57085 7.81236 8.04404 8.20856 8.26765 9.04333 9.76822 9.96659 11.25428 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003621 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.208217 B = 7730.591346 C = 9184.989034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.013 3.987 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.091 0.909 9 N -0.740 5.740 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.059 3.941 13 O -0.565 6.565 14 C 0.115 3.885 15 N -0.707 5.707 16 C 0.555 3.445 17 O -0.529 6.529 18 C -0.168 4.168 19 C -0.020 4.020 20 C -0.157 4.157 21 C 0.163 3.837 22 F -0.114 7.114 23 C -0.133 4.133 24 Cl -0.025 7.025 25 C 0.198 3.802 26 F -0.093 7.093 27 H 0.261 0.739 28 H 0.366 0.634 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.367 0.633 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.408 0.592 35 H 0.161 0.839 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.844 -2.882 11.205 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.184 4.184 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.061 3.939 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.009 4.009 15 N -0.359 5.359 16 C 0.340 3.660 17 O -0.407 6.407 18 C -0.173 4.173 19 C -0.039 4.039 20 C -0.176 4.176 21 C 0.142 3.858 22 F -0.092 7.092 23 C -0.162 4.162 24 Cl 0.004 6.996 25 C 0.176 3.824 26 F -0.070 7.070 27 H 0.071 0.929 28 H 0.200 0.800 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.212 0.788 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.246 0.754 35 H 0.179 0.821 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 12.537 -2.771 11.569 17.283 hybrid contribution 0.307 1.147 -0.254 1.214 sum 12.844 -1.625 11.316 17.195 Atomic orbital electron populations 1.69693 1.05131 1.26052 1.56665 1.24638 0.95121 0.97161 1.01498 0.86614 0.79031 0.84960 0.78204 1.20958 1.21755 1.20283 1.19042 0.80350 0.94732 1.44200 0.89085 1.42755 1.03925 1.01790 1.89831 1.20586 0.90313 0.90634 0.92410 0.90619 1.22981 0.93898 0.90490 0.94838 1.86514 1.72166 1.51974 1.26259 1.21691 0.98683 0.98564 0.81941 1.45897 1.08993 1.62689 1.18323 1.17684 0.85157 0.79172 0.83940 1.90845 1.25037 1.53014 1.71763 1.20197 0.92581 1.07329 0.97162 1.21376 0.96642 0.91771 0.94112 1.21194 0.98532 1.02829 0.95040 1.17292 0.91619 0.95320 0.81584 1.91591 1.96384 1.82067 1.39160 1.20840 0.89684 1.10798 0.94863 1.98410 1.37807 1.93195 1.70188 1.16985 0.80984 0.94901 0.89528 1.91667 1.38206 1.89998 1.87166 0.92893 0.80049 0.95017 0.92673 0.78754 0.91223 0.90230 0.75436 0.82149 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.97 55.49 0.78 -26.34 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 20.87 27.74 -169.99 -4.72 16.15 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.13 6.51 56.52 0.37 -5.76 16 7 C -0.25 -6.36 10.41 -15.06 -0.16 -6.52 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 9 N -0.74 -15.45 4.31 -53.42 -0.23 -15.69 16 10 C 0.17 2.86 2.84 -67.93 -0.19 2.66 16 11 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 12 C 0.06 0.91 6.86 37.16 0.25 1.17 16 13 O -0.57 -8.91 12.64 -35.23 -0.45 -9.35 16 14 C 0.12 1.79 5.12 -4.04 -0.02 1.77 16 15 N -0.71 -10.46 5.34 -61.33 -0.33 -10.79 16 16 C 0.56 8.65 7.76 -12.45 -0.10 8.55 16 17 O -0.53 -9.91 15.33 5.30 0.08 -9.83 16 18 C -0.17 -2.18 5.88 -104.91 -0.62 -2.80 16 19 C -0.02 -0.21 9.53 -39.20 -0.37 -0.58 16 20 C -0.16 -1.41 10.00 -39.58 -0.40 -1.81 16 21 C 0.16 1.68 7.28 -39.27 -0.29 1.39 16 22 F -0.11 -1.17 16.82 2.25 0.04 -1.14 16 23 C -0.13 -1.55 6.32 -39.43 -0.25 -1.80 16 24 Cl -0.03 -0.28 28.26 -51.86 -1.47 -1.74 16 25 C 0.20 2.62 7.26 -38.95 -0.28 2.34 16 26 F -0.09 -1.40 15.11 2.25 0.03 -1.37 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.37 7.99 5.66 -40.82 -0.23 7.75 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.37 4.06 9.12 45.56 0.42 4.48 16 32 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.08 1.40 7.39 -51.93 -0.38 1.01 16 34 H 0.41 5.66 6.16 -40.82 -0.25 5.41 16 35 H 0.16 1.44 6.40 -52.49 -0.34 1.11 16 36 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -31.86 336.68 -6.18 -38.04 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -2.49 Total: 12.36 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -2.51 Total: 4.62 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.22 Total: -52.81 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.36 Total: -19.18 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.07 Total: -2.51 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.72 Total: 16.15 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.47 Total: -1.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.86 -6.18 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717775552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.846 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds