Wall clock time and date at job start Tue Mar 31 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21580 * 120.00384 * 359.97438 * 16 15 14 18 18 C 1.47572 * 119.99790 * 179.97438 * 16 15 14 19 19 C 1.39745 * 120.13838 * 359.97438 * 18 16 15 20 20 C 1.37742 * 119.92547 * 180.02562 * 19 18 16 21 21 C 1.38737 * 120.20630 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.86313 * 180.02562 * 21 20 19 23 23 C 1.38588 * 120.27323 * 0.02562 * 21 20 19 24 24 Cl 1.73600 * 119.96155 * 179.97438 * 23 21 20 25 25 C 1.38294 * 120.07078 * 359.71432 * 23 21 20 26 26 F 1.35101 * 120.10129 * 180.30395 * 25 23 21 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 30 30 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 31 31 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 32 32 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 33 33 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 34 34 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 35 35 H 1.07999 * 120.03222 * 0.02562 * 19 18 16 36 36 H 1.08001 * 119.89984 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5622 -3.2053 0.5994 12 6 4.2641 -2.9783 -1.4246 13 8 5.0834 -2.0720 -2.1659 14 6 5.4967 -2.2577 0.6257 15 7 5.3536 -1.6600 1.9556 16 6 6.4486 -1.3804 2.6900 17 8 7.5550 -1.6246 2.2491 18 6 6.3045 -0.7778 4.0294 19 6 5.0342 -0.4955 4.5387 20 6 4.9048 0.0675 5.7892 21 6 6.0320 0.3547 6.5454 22 9 5.8970 0.9064 7.7712 23 6 7.2958 0.0782 6.0484 24 17 8.7007 0.4416 7.0013 25 6 7.4387 -0.4919 4.7966 26 9 8.6701 -0.7674 4.3141 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7298 -3.9637 -1.4143 30 1 3.2818 -3.0456 -1.8922 31 1 5.2233 -2.3315 -3.0869 32 1 6.0078 -3.2167 0.7115 33 1 6.0786 -1.5916 -0.0114 34 1 4.4709 -1.4648 2.3072 35 1 4.1549 -0.7184 3.9525 36 1 3.9228 0.2852 6.1826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717775552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:16 Heat of formation + Delta-G solvation = -156.741649 kcal Electronic energy + Delta-G solvation = -26216.915314 eV Core-core repulsion = 21783.904108 eV Total energy + Delta-G solvation = -4433.011205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.34257 -50.26750 -41.29189 -39.61221 -38.64343 -37.84798 -36.46800 -35.32844 -33.52357 -32.24900 -31.89989 -30.43826 -26.97230 -25.36482 -24.94233 -24.24251 -21.86331 -21.66406 -20.06527 -19.56279 -18.90454 -18.64708 -18.25103 -17.53063 -17.31308 -16.92270 -16.78514 -16.65059 -16.43635 -16.09863 -15.85594 -15.65496 -15.02335 -14.95159 -14.64835 -14.44950 -14.27763 -14.21312 -13.97645 -13.88426 -13.21317 -13.04655 -12.87770 -12.70035 -12.59953 -12.35984 -12.30553 -11.86573 -11.74270 -11.27085 -10.98628 -10.72497 -10.32154 -10.18109 -9.99910 -9.30545 -7.97047 -5.29862 -0.85082 -0.47170 0.56199 1.38663 1.40002 1.46883 1.50358 1.96290 2.24246 2.33245 2.51932 2.92023 3.26945 3.34044 3.36287 3.48802 3.55153 3.72861 3.91775 4.06194 4.26207 4.39889 4.50307 4.54840 4.62430 4.64205 4.71722 4.82903 4.98973 5.18747 5.22699 5.36092 5.83035 6.26001 6.39392 7.01770 7.05884 7.12454 7.86723 8.05810 9.23628 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003621 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.208217 B = 7730.591346 C = 9184.989034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.049 4.049 3 Si 0.939 3.061 4 H -0.296 1.296 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.221 4.221 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.166 3.834 11 H 0.087 0.913 12 C 0.063 3.937 13 O -0.584 6.584 14 C 0.125 3.875 15 N -0.702 5.702 16 C 0.555 3.445 17 O -0.567 6.567 18 C -0.180 4.180 19 C -0.012 4.012 20 C -0.137 4.137 21 C 0.168 3.832 22 F -0.111 7.111 23 C -0.137 4.137 24 Cl -0.025 7.025 25 C 0.180 3.820 26 F -0.111 7.111 27 H 0.256 0.744 28 H 0.363 0.637 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.388 0.612 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.177 0.823 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.239 -2.953 12.152 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.241 4.241 3 Si 0.768 3.232 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.177 1.177 7 C -0.352 4.352 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.058 3.942 11 H 0.105 0.895 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.001 3.999 15 N -0.354 5.354 16 C 0.342 3.658 17 O -0.447 6.447 18 C -0.185 4.185 19 C -0.030 4.030 20 C -0.156 4.156 21 C 0.147 3.853 22 F -0.089 7.089 23 C -0.165 4.165 24 Cl 0.004 6.996 25 C 0.158 3.842 26 F -0.089 7.089 27 H 0.065 0.935 28 H 0.196 0.804 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.236 0.764 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.252 0.748 35 H 0.194 0.806 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.975 -2.879 12.515 18.256 hybrid contribution 0.209 1.064 -0.542 1.212 sum 13.184 -1.816 11.974 17.902 Atomic orbital electron populations 1.69837 1.06850 1.26368 1.59811 1.25221 0.95641 1.00188 1.03025 0.85674 0.78834 0.81262 0.77424 1.22377 1.22383 1.17678 1.19011 0.82024 0.93523 1.40612 0.91219 1.42733 1.02464 1.03359 1.89847 1.20837 0.90576 0.89007 0.93795 0.89497 1.22825 0.93482 0.92058 0.93357 1.86461 1.71986 1.52659 1.28042 1.21534 0.97478 0.98970 0.81880 1.45844 1.09165 1.62406 1.17984 1.18016 0.84558 0.78524 0.84684 1.90823 1.26367 1.54697 1.72822 1.20054 0.93693 1.08561 0.96146 1.21547 0.95836 0.91028 0.94604 1.21518 0.99448 1.00698 0.93928 1.17394 0.91442 0.94794 0.81655 1.91606 1.96320 1.81937 1.39051 1.20890 0.90359 1.10830 0.94466 1.98409 1.38033 1.93160 1.69977 1.17156 0.80496 0.96168 0.90342 1.91615 1.39319 1.90416 1.87532 0.93493 0.80367 0.91331 0.94576 0.76385 0.89583 0.92055 0.74771 0.80611 0.78698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -57.73 13.97 21.65 0.30 -57.43 16 2 C -0.05 -2.59 5.50 84.86 0.47 -2.12 16 3 Si 0.94 42.60 27.74 68.60 1.90 44.50 16 4 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.25 -10.24 6.51 99.48 0.65 -9.60 16 7 C -0.22 -10.89 10.41 84.04 0.87 -10.01 16 8 H 0.07 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.74 -29.62 4.31 -322.93 -1.39 -31.02 16 10 C 0.17 5.20 2.84 44.99 0.13 5.33 16 11 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 12 C 0.06 1.81 6.86 71.98 0.49 2.30 16 13 O -0.58 -17.17 12.64 -148.98 -1.88 -19.06 16 14 C 0.13 3.64 5.12 86.38 0.44 4.08 16 15 N -0.70 -19.43 5.34 -466.22 -2.49 -21.92 16 16 C 0.56 16.67 7.76 86.71 0.67 17.34 16 17 O -0.57 -21.09 15.33 -3.97 -0.06 -21.15 16 18 C -0.18 -4.40 5.88 -20.05 -0.12 -4.52 16 19 C -0.01 -0.20 9.53 22.52 0.21 0.01 16 20 C -0.14 -1.97 10.00 22.27 0.22 -1.74 16 21 C 0.17 3.02 7.28 22.47 0.16 3.18 16 22 F -0.11 -1.99 16.82 44.97 0.76 -1.23 16 23 C -0.14 -2.99 6.32 22.37 0.14 -2.85 16 24 Cl -0.02 -0.53 28.26 -2.72 -0.08 -0.61 16 25 C 0.18 4.63 7.26 22.68 0.16 4.80 16 26 F -0.11 -3.39 15.11 44.97 0.68 -2.71 16 27 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.36 15.04 5.66 -92.71 -0.52 14.52 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.39 7.71 9.12 -74.06 -0.68 7.03 16 32 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.06 2.05 7.39 -2.39 -0.02 2.04 16 34 H 0.41 10.46 6.16 -92.71 -0.57 9.89 16 35 H 0.18 2.55 6.40 -2.91 -0.02 2.53 16 36 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -69.20 336.68 0.97 -68.24 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.64 Total: 26.59 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 3.87 Total: 15.80 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -3.58 Total: -110.36 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -1.94 Total: -40.21 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 1.44 Total: -3.94 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.90 Total: 44.50 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -69.20 0.97 -68.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717775552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.506 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds