Wall clock time and date at job start Tue Mar 31 2020 18:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21583 * 120.00133 * 0.02562 * 16 15 14 18 18 C 1.47575 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.39730 * 120.13892 * 0.02562 * 18 16 15 20 20 C 1.37745 * 119.92871 * 179.97438 * 19 18 16 21 21 C 1.38730 * 120.20249 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.86580 * 180.02562 * 21 20 19 23 23 C 1.38585 * 120.27484 * 0.02562 * 21 20 19 24 24 Cl 1.73604 * 119.96512 * 180.02562 * 23 21 20 25 25 C 1.38298 * 120.07213 * 359.71416 * 23 21 20 26 26 F 1.35099 * 120.10425 * 180.30339 * 25 23 21 27 27 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 30 30 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 31 31 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 33 33 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 34 34 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 35 35 H 1.08001 * 120.03392 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.90032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3872 -6.2313 2.2187 18 6 -0.4888 -4.7371 4.0097 19 6 -0.0964 -3.4994 4.5261 20 6 -0.5140 -3.1148 5.7811 21 6 -1.3237 -3.9524 6.5343 22 9 -1.7297 -3.5681 7.7643 23 6 -1.7179 -5.1817 6.0304 24 17 -2.7318 -6.2232 6.9797 25 6 -1.3097 -5.5770 4.7695 26 9 -1.6986 -6.7726 4.2752 27 1 -0.4851 -0.8400 -0.0004 28 1 0.3555 -2.3881 -0.0015 29 1 2.9641 -3.2122 -1.9146 30 1 3.0368 -4.9285 -1.4486 31 1 1.3708 -4.5275 -3.1130 32 1 0.3130 -4.9200 -0.0361 33 1 1.7583 -5.6761 0.6765 34 1 1.0152 -3.4802 2.2898 35 1 0.5329 -2.8447 3.9415 36 1 -0.2108 -2.1579 6.1796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717775554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:21 Heat of formation + Delta-G solvation = -136.233080 kcal Electronic energy + Delta-G solvation = -26146.962184 eV Core-core repulsion = 21714.840297 eV Total energy + Delta-G solvation = -4432.121887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.46698 -49.18829 -40.13143 -38.53139 -37.28047 -36.90473 -35.12449 -33.89058 -31.91936 -31.00464 -30.82439 -28.12816 -25.74151 -24.06001 -23.60101 -23.22508 -20.65970 -20.37985 -18.75285 -17.96120 -17.84070 -17.54706 -16.76545 -16.54828 -16.26255 -15.71955 -15.68394 -15.62083 -15.00390 -14.83446 -14.69959 -14.07845 -13.77590 -13.74643 -13.48751 -13.27258 -13.15955 -12.95916 -12.92416 -12.16528 -12.03136 -11.75316 -11.55720 -11.43942 -10.94631 -10.82917 -10.52220 -10.12666 -9.93859 -9.57170 -9.28957 -9.27493 -9.22655 -9.07057 -8.79775 -7.19831 -6.22011 -3.24700 0.11090 0.44705 1.48152 2.41644 3.12274 3.29140 3.34678 3.42402 3.46665 3.61302 3.85909 4.17477 4.33741 4.48116 4.53860 4.79249 4.99479 5.13128 5.24693 5.34648 5.40773 5.44958 5.50239 5.58988 5.74581 5.86500 5.88077 6.09368 6.16806 6.32354 6.55654 6.64480 7.63053 7.65809 8.07361 8.26528 8.63429 9.07072 9.94000 10.09303 11.25257 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003414 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.084821 B = 8198.666654 C = 9989.216168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.081 2.919 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.342 4.342 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.117 3.883 15 N -0.704 5.704 16 C 0.555 3.445 17 O -0.530 6.530 18 C -0.167 4.167 19 C -0.018 4.018 20 C -0.157 4.157 21 C 0.162 3.838 22 F -0.114 7.114 23 C -0.133 4.133 24 Cl -0.026 7.026 25 C 0.198 3.802 26 F -0.093 7.093 27 H 0.258 0.742 28 H 0.372 0.628 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.366 0.634 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -9.131 11.168 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.237 4.237 3 Si 0.912 3.088 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.356 5.356 16 C 0.340 3.660 17 O -0.408 6.408 18 C -0.172 4.172 19 C -0.037 4.037 20 C -0.176 4.176 21 C 0.142 3.858 22 F -0.092 7.092 23 C -0.162 4.162 24 Cl 0.003 6.997 25 C 0.176 3.824 26 F -0.071 7.071 27 H 0.069 0.931 28 H 0.206 0.794 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.211 0.789 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.736 -8.184 11.520 14.151 hybrid contribution 0.138 -1.559 -0.276 1.589 sum 0.873 -9.743 11.244 14.904 Atomic orbital electron populations 1.70844 1.06061 1.28746 1.52485 1.25738 0.96979 1.00896 1.00051 0.83221 0.73905 0.75451 0.76249 1.22255 1.22223 1.21405 1.20043 0.91944 0.85645 1.49617 0.91693 1.42399 1.05081 1.00060 1.89317 1.20539 0.94961 0.86416 0.92085 0.91414 1.23005 0.86481 0.97453 0.95255 1.86543 1.32157 1.92028 1.25855 1.21649 0.99842 0.97269 0.81921 1.45871 1.50314 1.21510 1.17936 1.17690 0.79478 0.84787 0.84004 1.90842 1.56267 1.21975 1.71741 1.20186 1.03413 0.96428 0.97138 1.21354 0.95010 0.93314 0.94001 1.21179 0.99923 1.01410 0.95045 1.17284 0.95748 0.91331 0.81472 1.91589 1.88244 1.90579 1.38828 1.20830 1.05537 0.95180 0.94631 1.98408 1.65829 1.65013 1.70421 1.16986 0.93757 0.82305 0.89369 1.91664 1.87907 1.40742 1.86756 0.93098 0.79436 0.93171 0.95321 0.78935 0.90285 0.91562 0.75455 0.82237 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.07 13.70 55.49 0.76 -26.31 16 2 C -0.04 -1.01 5.50 -17.43 -0.10 -1.10 16 3 Si 1.08 24.04 29.92 -169.99 -5.09 18.96 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.30 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.34 -8.58 9.93 -15.06 -0.15 -8.73 16 8 H 0.07 1.60 7.83 -52.48 -0.41 1.19 16 9 N -0.73 -16.16 4.51 -53.43 -0.24 -16.40 16 10 C 0.17 3.05 2.84 -67.93 -0.19 2.85 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 0.98 6.86 37.16 0.25 1.24 16 13 O -0.56 -9.59 12.64 -35.23 -0.45 -10.03 16 14 C 0.12 1.95 5.12 -4.04 -0.02 1.93 16 15 N -0.70 -11.05 5.34 -61.34 -0.33 -11.37 16 16 C 0.56 9.09 7.76 -12.45 -0.10 8.99 16 17 O -0.53 -10.38 15.33 5.29 0.08 -10.30 16 18 C -0.17 -2.28 5.88 -104.92 -0.62 -2.90 16 19 C -0.02 -0.20 9.53 -39.20 -0.37 -0.57 16 20 C -0.16 -1.49 10.00 -39.58 -0.40 -1.89 16 21 C 0.16 1.75 7.28 -39.27 -0.29 1.47 16 22 F -0.11 -1.23 16.82 2.25 0.04 -1.19 16 23 C -0.13 -1.62 6.32 -39.43 -0.25 -1.87 16 24 Cl -0.03 -0.30 28.26 -51.86 -1.47 -1.76 16 25 C 0.20 2.73 7.26 -38.94 -0.28 2.45 16 26 F -0.09 -1.46 15.11 2.25 0.03 -1.43 16 27 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 28 H 0.37 9.01 6.63 -40.82 -0.27 8.74 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.37 4.47 9.12 45.56 0.42 4.88 16 32 H 0.08 1.50 7.39 -51.93 -0.38 1.11 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.41 6.09 6.16 -40.82 -0.25 5.84 16 35 H 0.16 1.58 6.40 -52.49 -0.34 1.25 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -31.71 338.10 -6.48 -38.19 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -2.42 Total: 14.68 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.51 Total: 1.87 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.19 Total: -54.09 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.36 Total: -20.33 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.07 Total: -2.62 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.09 Total: 18.96 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.47 Total: -1.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.71 -6.48 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717775554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.040 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds