Wall clock time and date at job start Tue Mar 31 2020 18:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21583 * 120.00133 * 0.02562 * 16 15 14 18 18 C 1.47575 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.39730 * 120.13892 * 0.02562 * 18 16 15 20 20 C 1.37745 * 119.92871 * 179.97438 * 19 18 16 21 21 C 1.38730 * 120.20249 * 359.97438 * 20 19 18 22 22 F 1.35101 * 119.86580 * 180.02562 * 21 20 19 23 23 C 1.38585 * 120.27484 * 0.02562 * 21 20 19 24 24 Cl 1.73604 * 119.96512 * 180.02562 * 23 21 20 25 25 C 1.38298 * 120.07213 * 359.71416 * 23 21 20 26 26 F 1.35099 * 120.10425 * 180.30339 * 25 23 21 27 27 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 30 30 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 31 31 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 33 33 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 34 34 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 35 35 H 1.08001 * 120.03392 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.90032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3872 -6.2313 2.2187 18 6 -0.4888 -4.7371 4.0097 19 6 -0.0964 -3.4994 4.5261 20 6 -0.5140 -3.1148 5.7811 21 6 -1.3237 -3.9524 6.5343 22 9 -1.7297 -3.5681 7.7643 23 6 -1.7179 -5.1817 6.0304 24 17 -2.7318 -6.2232 6.9797 25 6 -1.3097 -5.5770 4.7695 26 9 -1.6986 -6.7726 4.2752 27 1 -0.4851 -0.8400 -0.0004 28 1 0.3555 -2.3881 -0.0015 29 1 2.9641 -3.2122 -1.9146 30 1 3.0368 -4.9285 -1.4486 31 1 1.3708 -4.5275 -3.1130 32 1 0.3130 -4.9200 -0.0361 33 1 1.7583 -5.6761 0.6765 34 1 1.0152 -3.4802 2.2898 35 1 0.5329 -2.8447 3.9415 36 1 -0.2108 -2.1579 6.1796 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717775554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:20 Heat of formation + Delta-G solvation = -159.486720 kcal Electronic energy + Delta-G solvation = -26147.970538 eV Core-core repulsion = 21714.840297 eV Total energy + Delta-G solvation = -4433.130240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.35508 -50.28676 -41.31894 -39.63311 -38.67870 -37.86188 -36.56436 -35.51162 -33.39682 -32.08851 -31.90927 -29.76731 -27.01354 -25.54673 -25.00123 -24.27912 -21.90883 -21.78524 -19.81020 -19.50481 -18.96530 -18.75819 -18.19622 -17.54546 -17.39064 -16.92171 -16.82580 -16.69931 -16.35018 -16.14880 -15.76634 -15.67533 -15.39902 -14.97883 -14.90174 -14.50589 -14.30989 -13.99583 -13.91643 -13.52455 -13.08494 -13.04157 -12.74566 -12.66187 -12.50758 -12.37098 -12.05554 -11.85518 -11.28876 -11.23995 -10.93231 -10.76190 -10.35027 -10.19643 -10.02605 -9.07812 -8.27768 -5.24368 -0.86832 -0.48773 0.54544 1.36124 1.66087 1.74922 1.88291 1.93247 2.21927 2.31398 2.76546 2.90110 3.25354 3.32311 3.47664 3.52884 3.54154 3.76344 3.89573 4.03876 4.24330 4.34589 4.47787 4.48923 4.55600 4.59670 4.70080 4.77892 4.91622 5.14446 5.20655 5.31895 5.69282 6.35616 6.57744 6.96884 7.00611 7.14489 8.04008 8.18430 9.22411 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.012947 B = 0.003414 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.084821 B = 8198.666654 C = 9989.216168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.096 4.096 3 Si 1.125 2.875 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.305 1.305 7 C -0.325 4.325 8 H 0.073 0.927 9 N -0.734 5.734 10 C 0.168 3.832 11 H 0.083 0.917 12 C 0.063 3.937 13 O -0.585 6.585 14 C 0.128 3.872 15 N -0.698 5.698 16 C 0.554 3.446 17 O -0.569 6.569 18 C -0.180 4.180 19 C -0.009 4.009 20 C -0.136 4.136 21 C 0.169 3.831 22 F -0.110 7.110 23 C -0.136 4.136 24 Cl -0.023 7.023 25 C 0.180 3.820 26 F -0.111 7.111 27 H 0.243 0.757 28 H 0.359 0.641 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.386 0.614 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.172 0.828 36 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -8.408 12.202 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.288 4.288 3 Si 0.952 3.048 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.232 1.232 7 C -0.456 4.456 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.100 0.900 12 C -0.018 4.018 13 O -0.392 6.392 14 C 0.004 3.996 15 N -0.350 5.350 16 C 0.341 3.659 17 O -0.450 6.450 18 C -0.184 4.184 19 C -0.028 4.028 20 C -0.155 4.155 21 C 0.149 3.851 22 F -0.088 7.088 23 C -0.164 4.164 24 Cl 0.006 6.994 25 C 0.158 3.842 26 F -0.089 7.089 27 H 0.054 0.946 28 H 0.191 0.809 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.251 0.749 35 H 0.189 0.811 36 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.493 -7.499 12.552 14.833 hybrid contribution -0.364 -1.859 -0.585 1.982 sum 2.129 -9.357 11.967 15.340 Atomic orbital electron populations 1.70961 1.07326 1.27912 1.56014 1.26927 0.96917 1.04206 1.00777 0.82628 0.73350 0.71948 0.76907 1.20683 1.20243 1.23211 1.20350 0.92341 0.86468 1.46477 0.90944 1.42506 1.04561 1.01007 1.89515 1.20783 0.95080 0.84821 0.93485 0.89956 1.22876 0.86514 0.98646 0.93719 1.86501 1.32851 1.92179 1.27682 1.21475 0.98760 0.97525 0.81881 1.45800 1.50111 1.21571 1.17526 1.18066 0.78788 0.84177 0.84852 1.90816 1.57679 1.23615 1.72858 1.20026 1.04615 0.97778 0.96025 1.21481 0.94648 0.92133 0.94548 1.21497 0.98064 1.02065 0.93855 1.17363 0.95396 0.90822 0.81557 1.91608 1.88163 1.90415 1.38611 1.20872 1.05623 0.95789 0.94165 1.98407 1.65753 1.65154 1.70127 1.17151 0.94760 0.82060 0.90214 1.91611 1.88295 1.41857 1.87144 0.94606 0.80895 0.94617 0.91533 0.76562 0.92824 0.89910 0.74897 0.81053 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.80 13.70 21.65 0.30 -56.50 16 2 C -0.10 -5.05 5.50 84.86 0.47 -4.59 16 3 Si 1.13 47.56 29.92 68.60 2.05 49.61 16 4 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.33 -15.92 9.93 84.03 0.83 -15.09 16 8 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 9 N -0.73 -32.24 4.51 -322.94 -1.46 -33.70 16 10 C 0.17 5.71 2.84 44.99 0.13 5.84 16 11 H 0.08 2.59 8.08 -2.38 -0.02 2.57 16 12 C 0.06 1.96 6.86 71.98 0.49 2.45 16 13 O -0.59 -19.34 12.64 -148.98 -1.88 -21.22 16 14 C 0.13 4.16 5.12 86.38 0.44 4.60 16 15 N -0.70 -21.56 5.34 -466.23 -2.49 -24.05 16 16 C 0.55 18.23 7.76 86.71 0.67 18.90 16 17 O -0.57 -22.80 15.33 -3.98 -0.06 -22.86 16 18 C -0.18 -4.83 5.88 -20.05 -0.12 -4.94 16 19 C -0.01 -0.19 9.53 22.51 0.21 0.03 16 20 C -0.14 -2.19 10.00 22.27 0.22 -1.96 16 21 C 0.17 3.28 7.28 22.47 0.16 3.45 16 22 F -0.11 -2.08 16.82 44.97 0.76 -1.32 16 23 C -0.14 -3.17 6.32 22.37 0.14 -3.03 16 24 Cl -0.02 -0.53 28.26 -2.72 -0.08 -0.60 16 25 C 0.18 4.97 7.26 22.68 0.16 5.13 16 26 F -0.11 -3.61 15.11 44.97 0.68 -2.93 16 27 H 0.24 14.38 6.77 -92.71 -0.63 13.75 16 28 H 0.36 17.61 6.63 -92.71 -0.61 16.99 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.39 8.89 9.12 -74.06 -0.68 8.22 16 32 H 0.05 2.05 7.39 -2.39 -0.02 2.03 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.41 11.91 6.16 -92.71 -0.57 11.34 16 35 H 0.17 3.01 6.40 -2.91 -0.02 2.99 16 36 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -68.93 338.10 1.12 -67.81 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.53 Total: 34.97 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 3.83 Total: 10.79 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -3.65 Total: -114.25 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.94 Total: -44.08 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.44 Total: -4.25 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.05 Total: 49.61 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -68.93 1.12 -67.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717775554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.675 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds