Wall clock time and date at job start Tue Mar 31 2020 18:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00568 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47289 * 60.00327 * 11 10 9 13 13 O 1.42905 * 109.47264 * 300.00160 * 11 10 9 14 14 C 1.52997 * 109.47232 * 180.02562 * 11 10 9 15 15 N 1.46505 * 109.47119 * 185.00149 * 14 11 10 16 16 C 1.34782 * 120.00001 * 179.97438 * 15 14 11 17 17 O 1.21571 * 119.99967 * 359.97438 * 16 15 14 18 18 C 1.47617 * 119.99785 * 179.97438 * 16 15 14 19 19 C 1.39888 * 120.16448 * 89.72584 * 18 16 15 20 20 F 1.35097 * 120.07766 * 359.97438 * 19 18 16 21 21 C 1.38224 * 119.84185 * 179.76433 * 19 18 16 22 22 C 1.38288 * 120.18102 * 0.51523 * 21 19 18 23 23 C 1.38527 * 120.33539 * 359.73505 * 22 21 19 24 24 F 1.35092 * 119.92317 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.15513 * 0.02562 * 23 22 21 26 26 Cl 1.73600 * 120.09302 * 180.02562 * 25 23 22 27 27 H 0.96998 * 120.00532 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00036 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47049 * 60.00304 * 10 9 7 30 30 H 1.09002 * 109.47129 * 300.00376 * 10 9 7 31 31 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 32 32 H 1.09000 * 109.47278 * 304.99661 * 14 11 10 33 33 H 1.08994 * 109.47510 * 65.00170 * 14 11 10 34 34 H 0.97002 * 120.00209 * 359.97438 * 15 14 11 35 35 H 1.08002 * 119.91043 * 180.24638 * 21 19 18 36 36 H 1.07994 * 119.82978 * 179.72070 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4371 -4.7614 -0.8918 13 8 0.2429 -4.7448 1.1651 14 6 1.8291 -6.1446 -0.0026 15 7 0.8817 -7.2555 -0.1234 16 6 1.3318 -8.5258 -0.1459 17 8 2.5241 -8.7496 -0.0664 18 6 0.3771 -9.6451 -0.2670 19 6 0.0085 -10.1210 -1.5298 20 9 0.5251 -9.5568 -2.6433 21 6 -0.8823 -11.1726 -1.6354 22 6 -1.4172 -11.7476 -0.4971 23 6 -1.0613 -11.2788 0.7569 24 9 -1.5894 -11.8463 1.8633 25 6 -0.1676 -10.2306 0.8788 26 17 0.2778 -9.6449 2.4512 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6855 -3.7148 0.8878 30 1 2.6842 -3.7140 -0.8921 31 1 0.7353 -4.7907 1.9960 32 1 2.5211 -6.1643 -0.8445 33 1 2.3869 -6.2425 0.9286 34 1 -0.0697 -7.0769 -0.1872 35 1 -1.1646 -11.5435 -2.6096 36 1 -2.1161 -12.5660 -0.5863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732658933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:39 Heat of formation + Delta-G solvation = -140.661014 kcal Electronic energy + Delta-G solvation = -25501.388903 eV Core-core repulsion = 21069.075006 eV Total energy + Delta-G solvation = -4432.313897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.56898 -49.55786 -40.45729 -38.88927 -37.61637 -37.11914 -34.53737 -34.03028 -32.22032 -31.28628 -30.72052 -29.10771 -25.95815 -24.51029 -23.53634 -22.60942 -21.51790 -20.91856 -18.90338 -18.24081 -18.12890 -17.21561 -17.00924 -16.85584 -16.31984 -15.99929 -15.94347 -15.57145 -15.30702 -15.03508 -14.69436 -14.48855 -14.07440 -13.88173 -13.71771 -13.36605 -13.33738 -13.01799 -12.67766 -12.38400 -12.32629 -11.95069 -11.89372 -11.60292 -10.97713 -10.83579 -10.68828 -10.46632 -10.18390 -9.84109 -9.77558 -9.55361 -9.30167 -9.24900 -8.92343 -6.96064 -5.77784 -3.07735 -0.01116 0.11367 1.29854 2.11985 2.41100 2.73575 3.39305 3.42686 3.43465 3.47822 3.49576 3.85017 4.13027 4.17781 4.50633 4.52555 4.68360 4.80411 4.93753 5.00649 5.14205 5.18162 5.23916 5.53080 5.55747 5.69805 5.84983 5.89382 6.11141 6.22458 6.47519 6.63548 7.16646 7.66782 7.81299 7.91860 8.40288 9.52071 10.08210 10.44116 11.44491 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002373 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.950293 B =11796.748666 C =12247.209280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.551 6.551 14 C 0.089 3.911 15 N -0.703 5.703 16 C 0.563 3.437 17 O -0.515 6.515 18 C -0.125 4.125 19 C 0.138 3.862 20 F -0.115 7.115 21 C -0.120 4.120 22 C -0.097 4.097 23 C 0.101 3.899 24 F -0.117 7.117 25 C -0.022 4.022 26 Cl -0.014 7.014 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.374 0.626 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.408 0.592 35 H 0.161 0.839 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -28.101 -0.966 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.356 6.356 14 C -0.035 4.035 15 N -0.354 5.354 16 C 0.346 3.654 17 O -0.390 6.390 18 C -0.130 4.130 19 C 0.117 3.883 20 F -0.093 7.093 21 C -0.139 4.139 22 C -0.116 4.116 23 C 0.081 3.919 24 F -0.095 7.095 25 C -0.051 4.051 26 Cl 0.015 6.985 27 H 0.065 0.935 28 H 0.224 0.776 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.221 0.779 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.179 0.821 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.944 -27.993 -1.192 28.295 hybrid contribution 0.247 1.003 0.470 1.134 sum -3.698 -26.991 -0.723 27.252 Atomic orbital electron populations 1.69676 1.05107 1.25704 1.57292 1.24760 0.95534 0.97736 1.02801 0.86180 0.78638 0.83751 0.77537 1.21668 1.21718 1.20747 1.19210 0.90996 0.84073 1.43237 0.91208 1.42226 1.06134 0.99331 1.89373 1.21185 0.93461 0.86563 0.98960 1.22395 0.93348 0.91536 0.89800 0.87665 1.86584 1.36936 1.96389 1.15674 1.22243 0.92236 0.85577 1.03457 1.45870 1.11701 1.04858 1.72947 1.17637 0.87608 0.82572 0.77609 1.90860 1.15247 1.84301 1.48607 1.19730 1.01187 1.00719 0.91394 1.17437 0.95413 0.94195 0.81230 1.91615 1.84870 1.83576 1.49277 1.21091 0.96777 0.95198 1.00792 1.21131 1.00438 1.00870 0.89179 1.17192 0.96545 0.94146 0.84037 1.91593 1.84286 1.83103 1.50543 1.20715 0.98747 0.97035 0.88568 1.98458 1.91227 1.87055 1.21717 0.93457 0.77619 0.95870 0.95314 0.77875 0.89917 0.90539 0.75669 0.82127 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.82 9.99 -15.07 -0.15 -6.97 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.19 5.49 -59.91 -0.33 -18.52 16 10 C 0.13 2.41 5.92 -4.04 -0.02 2.39 16 11 C 0.09 1.33 3.09 -26.73 -0.08 1.25 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 O -0.55 -8.54 13.03 -35.23 -0.46 -9.00 16 14 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 15 N -0.70 -8.31 5.50 -61.32 -0.34 -8.64 16 16 C 0.56 7.33 5.95 -12.43 -0.07 7.26 16 17 O -0.51 -8.44 17.11 5.30 0.09 -8.35 16 18 C -0.13 -1.32 5.64 -104.89 -0.59 -1.91 16 19 C 0.14 1.21 7.29 -38.97 -0.28 0.92 16 20 F -0.12 -1.18 16.83 2.25 0.04 -1.14 16 21 C -0.12 -0.64 10.01 -39.57 -0.40 -1.04 16 22 C -0.10 -0.49 10.01 -39.46 -0.39 -0.88 16 23 C 0.10 0.79 7.26 -39.46 -0.29 0.50 16 24 F -0.12 -0.99 16.83 2.25 0.04 -0.95 16 25 C -0.02 -0.21 6.36 -39.00 -0.25 -0.46 16 26 Cl -0.01 -0.15 27.70 -51.86 -1.44 -1.59 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.39 10.45 7.54 -40.82 -0.31 10.14 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.37 4.88 9.04 45.56 0.41 5.29 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 4.27 8.46 -40.82 -0.35 3.92 16 35 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 36 H 0.16 0.31 8.06 -52.49 -0.42 -0.12 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -34.02 346.75 -6.86 -40.89 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -2.75 Total: 10.50 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.65 Total: 1.72 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.06 Total: -54.68 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.08 Total: -2.09 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.44 Total: -1.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.02 -6.86 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732658933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.773 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds