Wall clock time and date at job start Tue Mar 31 2020 18:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00407 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00568 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47289 * 60.00327 * 11 10 9 13 13 O 1.42905 * 109.47264 * 300.00160 * 11 10 9 14 14 C 1.52997 * 109.47232 * 180.02562 * 11 10 9 15 15 N 1.46505 * 109.47119 * 185.00149 * 14 11 10 16 16 C 1.34782 * 120.00001 * 179.97438 * 15 14 11 17 17 O 1.21571 * 119.99967 * 359.97438 * 16 15 14 18 18 C 1.47617 * 119.99785 * 179.97438 * 16 15 14 19 19 C 1.39888 * 120.16448 * 89.72584 * 18 16 15 20 20 F 1.35097 * 120.07766 * 359.97438 * 19 18 16 21 21 C 1.38224 * 119.84185 * 179.76433 * 19 18 16 22 22 C 1.38288 * 120.18102 * 0.51523 * 21 19 18 23 23 C 1.38527 * 120.33539 * 359.73505 * 22 21 19 24 24 F 1.35092 * 119.92317 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.15513 * 0.02562 * 23 22 21 26 26 Cl 1.73600 * 120.09302 * 180.02562 * 25 23 22 27 27 H 0.96998 * 120.00532 * 0.02562 * 1 2 3 28 28 H 0.97004 * 120.00036 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47049 * 60.00304 * 10 9 7 30 30 H 1.09002 * 109.47129 * 300.00376 * 10 9 7 31 31 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 32 32 H 1.09000 * 109.47278 * 304.99661 * 14 11 10 33 33 H 1.08994 * 109.47510 * 65.00170 * 14 11 10 34 34 H 0.97002 * 120.00209 * 359.97438 * 15 14 11 35 35 H 1.08002 * 119.91043 * 180.24638 * 21 19 18 36 36 H 1.07994 * 119.82978 * 179.72070 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 1 0.4371 -4.7614 -0.8918 13 8 0.2429 -4.7448 1.1651 14 6 1.8291 -6.1446 -0.0026 15 7 0.8817 -7.2555 -0.1234 16 6 1.3318 -8.5258 -0.1459 17 8 2.5241 -8.7496 -0.0664 18 6 0.3771 -9.6451 -0.2670 19 6 0.0085 -10.1210 -1.5298 20 9 0.5251 -9.5568 -2.6433 21 6 -0.8823 -11.1726 -1.6354 22 6 -1.4172 -11.7476 -0.4971 23 6 -1.0613 -11.2788 0.7569 24 9 -1.5894 -11.8463 1.8633 25 6 -0.1676 -10.2306 0.8788 26 17 0.2778 -9.6449 2.4512 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6855 -3.7148 0.8878 30 1 2.6842 -3.7140 -0.8921 31 1 0.7353 -4.7907 1.9960 32 1 2.5211 -6.1643 -0.8445 33 1 2.3869 -6.2425 0.9286 34 1 -0.0697 -7.0769 -0.1872 35 1 -1.1646 -11.5435 -2.6096 36 1 -2.1161 -12.5660 -0.5863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732658933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:38 Heat of formation + Delta-G solvation = -167.082904 kcal Electronic energy + Delta-G solvation = -25502.534642 eV Core-core repulsion = 21069.075006 eV Total energy + Delta-G solvation = -4433.459636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.26639 -50.17286 -41.36556 -39.70141 -38.87031 -37.84717 -36.11418 -35.44856 -33.26326 -32.80658 -31.35370 -30.51799 -27.37487 -25.61631 -24.31669 -24.03962 -22.82322 -21.92806 -19.77254 -19.19140 -18.89210 -18.77247 -17.98751 -17.79185 -17.19229 -17.13284 -16.66982 -16.55845 -16.42163 -16.12620 -15.72999 -15.58945 -15.47645 -15.04904 -14.76847 -14.54968 -14.20577 -14.05927 -13.98787 -13.83392 -13.28499 -12.96673 -12.95862 -12.75999 -12.58443 -12.38158 -12.17520 -12.00079 -11.82667 -11.50870 -11.01400 -10.93668 -10.40696 -10.35358 -9.87270 -9.02035 -7.95466 -5.25131 -0.61197 -0.47577 0.59306 1.14304 1.47352 1.49065 1.57479 1.73699 1.94664 2.54917 2.77792 2.79024 3.21024 3.35745 3.44185 3.50148 3.55495 3.61264 3.90295 3.98873 4.16724 4.36425 4.40842 4.44739 4.57118 4.65258 4.68171 4.78400 4.91769 5.09739 5.19999 5.34208 5.47555 6.18517 6.25777 6.74868 6.85339 7.32961 8.07929 8.31308 9.27716 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002373 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.950293 B =11796.748666 C =12247.209280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.109 3.891 12 H 0.103 0.897 13 O -0.562 6.562 14 C 0.100 3.900 15 N -0.696 5.696 16 C 0.564 3.436 17 O -0.556 6.556 18 C -0.146 4.146 19 C 0.125 3.875 20 F -0.128 7.128 21 C -0.098 4.098 22 C -0.073 4.073 23 C 0.096 3.904 24 F -0.121 7.121 25 C -0.036 4.036 26 Cl -0.035 7.035 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.385 0.615 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.415 0.585 35 H 0.200 0.800 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -29.952 -1.812 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.049 3.951 12 H 0.121 0.879 13 O -0.368 6.368 14 C -0.024 4.024 15 N -0.346 5.346 16 C 0.349 3.651 17 O -0.434 6.434 18 C -0.151 4.151 19 C 0.105 3.895 20 F -0.106 7.106 21 C -0.116 4.116 22 C -0.091 4.091 23 C 0.076 3.924 24 F -0.100 7.100 25 C -0.065 4.065 26 Cl -0.006 7.006 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.217 0.783 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.454 -29.874 -2.032 30.273 hybrid contribution 0.391 1.453 0.710 1.663 sum -4.063 -28.421 -1.323 28.741 Atomic orbital electron populations 1.69832 1.06638 1.26112 1.59214 1.25592 0.96403 1.01183 1.03573 0.85131 0.77679 0.79402 0.77474 1.21314 1.22181 1.19428 1.19632 0.91508 0.85311 1.41548 0.90584 1.42406 1.05811 1.00702 1.89383 1.21387 0.94167 0.85671 0.99258 1.22097 0.92325 0.91021 0.89699 0.87888 1.86563 1.37527 1.96377 1.16359 1.22000 0.91969 0.84778 1.03629 1.45793 1.11905 1.04546 1.72370 1.18005 0.87535 0.83183 0.76396 1.90826 1.17117 1.84956 1.50549 1.19539 1.02132 1.00789 0.92658 1.17743 0.96392 0.95282 0.80129 1.91585 1.85290 1.84024 1.49694 1.21517 0.94418 0.93012 1.02652 1.21610 0.99463 1.00628 0.87395 1.17435 0.96228 0.93721 0.85017 1.91587 1.84252 1.83037 1.51092 1.20800 1.00029 0.98213 0.87450 1.98443 1.91574 1.87468 1.23082 0.93974 0.79023 0.95071 0.94709 0.76648 0.89891 0.90332 0.74806 0.78325 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.63 13.06 21.65 0.28 -59.34 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.23 5.49 -343.46 -1.89 -39.11 16 10 C 0.12 4.60 5.92 86.38 0.51 5.11 16 11 C 0.11 3.19 3.09 30.59 0.09 3.29 16 12 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 13 O -0.56 -17.25 13.03 -148.98 -1.94 -19.19 16 14 C 0.10 2.53 5.31 86.38 0.46 2.99 16 15 N -0.70 -16.37 5.50 -466.19 -2.56 -18.94 16 16 C 0.56 14.81 5.95 86.72 0.52 15.33 16 17 O -0.56 -18.65 17.11 -3.94 -0.07 -18.72 16 18 C -0.15 -3.00 5.64 -20.04 -0.11 -3.11 16 19 C 0.13 1.97 7.29 22.67 0.17 2.14 16 20 F -0.13 -2.47 16.83 44.97 0.76 -1.71 16 21 C -0.10 -0.67 10.01 22.28 0.22 -0.44 16 22 C -0.07 -0.42 10.01 22.35 0.22 -0.20 16 23 C 0.10 1.30 7.26 22.35 0.16 1.46 16 24 F -0.12 -1.83 16.83 44.97 0.76 -1.07 16 25 C -0.04 -0.69 6.36 22.64 0.14 -0.54 16 26 Cl -0.03 -0.77 27.70 -2.72 -0.08 -0.84 16 27 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.38 20.56 7.54 -92.71 -0.70 19.86 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.38 9.89 9.04 -74.06 -0.67 9.22 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.42 8.59 8.46 -92.71 -0.78 7.80 16 35 H 0.20 -0.11 8.06 -2.91 -0.02 -0.14 16 36 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 Total: -1.00 -74.82 346.75 0.01 -74.81 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.97 Total: 26.76 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 3.69 Total: 9.15 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -4.17 Total: -117.39 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.01 Total: -37.91 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 1.51 Total: -2.78 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.84 kcal Total: -74.82 0.01 -74.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732658933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.277 kcal (2) G-P(sol) polarization free energy of solvation -74.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds