Wall clock time and date at job start Tue Mar 31 2020 17:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99983 * 2 1 4 4 H 1.48505 * 109.46978 * 270.00252 * 3 2 1 5 5 H 1.48497 * 109.46747 * 30.00073 * 3 2 1 6 6 H 1.48502 * 109.47216 * 150.00062 * 3 2 1 7 7 C 1.37872 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00055 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00653 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47492 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99811 * 90.00399 * 10 9 7 12 12 C 1.50703 * 109.47289 * 89.99713 * 11 10 9 13 13 C 1.38668 * 120.41699 * 269.72232 * 12 11 10 14 14 C 1.38633 * 118.42041 * 179.78557 * 13 12 11 15 15 C 1.38224 * 119.15591 * 0.51099 * 14 13 12 16 16 N 1.31860 * 120.76804 * 359.72581 * 15 14 13 17 17 C 1.31892 * 121.72207 * 0.02562 * 16 15 14 18 18 C 1.34778 * 120.00131 * 269.99969 * 10 9 7 19 19 O 1.21279 * 119.99362 * 180.02562 * 18 10 9 20 20 C 1.50696 * 119.99888 * 0.02562 * 18 10 9 21 21 N 1.46501 * 109.46941 * 180.02562 * 20 18 10 22 22 C 1.35041 * 126.03929 * 125.00243 * 21 20 18 23 23 C 1.35373 * 107.72871 * 179.97438 * 22 21 20 24 24 Cl 1.73605 * 126.04633 * 179.97438 * 23 22 21 25 25 C 1.39932 * 107.90957 * 0.02562 * 23 22 21 26 26 N 1.30854 * 108.20733 * 359.75349 * 25 23 22 27 27 H 0.97002 * 120.00034 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46447 * 59.99349 * 9 7 2 29 29 H 1.09005 * 109.46526 * 300.00315 * 9 7 2 30 30 H 1.09001 * 109.47060 * 210.00163 * 11 10 9 31 31 H 1.09004 * 109.47073 * 329.99652 * 11 10 9 32 32 H 1.08000 * 120.79413 * 0.02562 * 13 12 11 33 33 H 1.07992 * 120.42251 * 180.21754 * 14 13 12 34 34 H 1.07998 * 119.61684 * 179.75282 * 15 14 13 35 35 H 1.07992 * 119.61024 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47440 * 299.99997 * 20 18 10 37 37 H 1.09001 * 109.47288 * 59.99909 * 20 18 10 38 38 H 1.08004 * 126.13394 * 359.93478 * 22 21 20 39 39 H 1.07997 * 125.89429 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2437 -3.2661 -1.2697 12 6 5.6668 -3.0293 -1.7054 13 6 5.9834 -1.9460 -2.5110 14 6 7.3064 -1.7650 -2.8834 15 6 8.2575 -2.6702 -2.4512 16 7 7.9192 -3.6921 -1.6897 17 6 6.6715 -3.8925 -1.3121 18 6 4.2250 -3.2103 1.1663 19 8 4.6297 -4.3536 1.1662 20 6 3.9738 -2.4998 2.4713 21 7 4.2923 -3.3969 3.5848 22 6 5.1492 -3.1358 4.5953 23 6 5.1617 -4.2138 5.4142 24 17 6.1025 -4.3852 6.8630 25 6 4.2830 -5.1659 4.8856 26 7 3.7579 -4.6751 3.7921 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8745 -0.6800 -0.8912 30 1 4.0767 -4.3353 -1.1392 31 1 3.5625 -2.8821 -2.0292 32 1 5.2182 -1.2573 -2.8373 33 1 7.5897 -0.9302 -3.5072 34 1 9.2898 -2.5386 -2.7402 35 1 6.4325 -4.7410 -0.6883 36 1 4.6036 -1.6121 2.5288 37 1 2.9257 -2.2061 2.5292 38 1 5.7223 -2.2298 4.7263 39 1 4.0717 -6.1366 5.3091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288113605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:52 Heat of formation + Delta-G solvation = 85.385983 kcal Electronic energy + Delta-G solvation = -25866.030883 eV Core-core repulsion = 22030.041400 eV Total energy + Delta-G solvation = -3835.989482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18743 -40.22481 -39.06622 -36.36787 -35.56984 -33.48140 -32.86296 -32.29051 -31.54708 -29.93808 -28.36267 -27.76757 -25.62826 -23.53279 -22.71361 -22.26663 -21.14671 -21.08137 -18.85185 -17.36398 -17.28389 -16.98747 -16.78719 -16.00251 -15.67847 -15.47407 -15.10248 -14.57632 -14.33761 -14.15087 -13.94358 -13.64907 -13.28781 -13.22493 -13.06486 -12.98162 -12.60908 -12.25859 -12.23326 -11.84328 -11.60513 -11.55782 -11.29602 -11.12697 -10.87980 -10.48803 -10.36932 -9.93863 -9.76997 -9.71992 -9.40092 -9.25386 -8.94117 -8.87676 -8.30895 -8.08064 -6.39389 -4.44228 1.13252 1.34450 1.84019 2.01751 2.74287 2.85445 2.95863 3.01791 3.07815 3.13115 3.49913 3.99039 4.08305 4.51691 4.66164 4.75635 4.80793 4.89543 4.93174 4.98876 5.08247 5.10210 5.13648 5.46620 5.52055 5.61870 5.69615 5.73383 5.90617 6.01624 6.11476 6.16848 6.35567 6.39563 6.46953 6.78036 6.82293 7.00883 7.20530 7.69846 7.78453 8.03902 8.16756 8.53873 8.68310 9.17802 10.72678 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.004513 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.383102 B = 6202.386972 C = 8739.322847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.081 3.919 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.207 3.793 10 N -0.583 5.583 11 C 0.163 3.837 12 C -0.148 4.148 13 C -0.062 4.062 14 C -0.179 4.179 15 C 0.091 3.909 16 N -0.491 5.491 17 C 0.119 3.881 18 C 0.511 3.489 19 O -0.535 6.535 20 C 0.116 3.884 21 N -0.343 5.343 22 C 0.070 3.930 23 C -0.189 4.189 24 Cl -0.053 7.053 25 C 0.051 3.949 26 N -0.244 5.244 27 H 0.269 0.731 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.180 0.820 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -1.601 2.544 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.100 0.900 9 C 0.086 3.914 10 N -0.314 5.314 11 C 0.039 3.961 12 C -0.151 4.151 13 C -0.088 4.088 14 C -0.199 4.199 15 C -0.066 4.066 16 N -0.199 5.199 17 C -0.039 4.039 18 C 0.297 3.703 19 O -0.412 6.412 20 C -0.008 4.008 21 N -0.125 5.125 22 C -0.078 4.078 23 C -0.228 4.228 24 Cl -0.025 7.025 25 C -0.137 4.137 26 N -0.065 5.065 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.197 0.803 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 12.124 -2.770 1.831 12.571 hybrid contribution 0.278 2.035 0.413 2.095 sum 12.402 -0.735 2.243 12.625 Atomic orbital electron populations 1.69878 1.06251 1.27465 1.48345 1.24875 0.94705 0.98846 0.94020 0.86972 0.80315 0.84090 0.79086 1.19750 1.20671 1.18964 1.21354 0.88695 0.95280 1.53619 0.89995 1.19892 0.96168 0.77608 0.97737 1.47854 1.63793 1.15929 1.03852 1.20172 0.90463 0.99109 0.86322 1.21429 0.98501 0.96497 0.98691 1.21631 0.96675 0.95931 0.94597 1.22112 0.94059 1.01215 1.02495 1.22739 0.99740 0.90367 0.93794 1.67740 1.20350 1.20418 1.11392 1.22875 0.87301 0.98228 0.95448 1.20172 0.78105 0.86757 0.85295 1.90694 1.46216 1.17218 1.87077 1.21764 1.06371 0.90102 0.82602 1.48026 1.32440 1.13238 1.18746 1.22173 0.95946 1.00066 0.89580 1.20666 1.07773 0.98133 0.96192 1.98300 1.71573 1.97725 1.34943 1.23858 0.96158 1.00193 0.93446 1.77679 1.20200 0.92152 1.16443 0.92092 0.95139 0.94906 0.89183 0.88654 0.84577 0.85011 0.83191 0.82400 0.86047 0.84658 0.80282 0.79542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 13.96 55.43 0.77 -23.23 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 17.96 27.47 -169.99 -4.67 13.29 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.04 6.54 56.52 0.37 -4.67 16 7 C -0.55 -13.01 9.83 -34.44 -0.34 -13.35 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 C 0.21 3.94 4.03 -5.19 -0.02 3.92 16 10 N -0.58 -10.40 2.44 -176.42 -0.43 -10.83 16 11 C 0.16 2.61 5.56 -5.19 -0.03 2.58 16 12 C -0.15 -2.19 5.48 -104.49 -0.57 -2.76 16 13 C -0.06 -0.81 9.86 -39.28 -0.39 -1.20 16 14 C -0.18 -2.07 10.11 -39.44 -0.40 -2.47 16 15 C 0.09 1.13 11.18 -17.54 -0.20 0.93 16 16 N -0.49 -7.49 10.36 -13.26 -0.14 -7.62 16 17 C 0.12 1.85 10.86 -17.55 -0.19 1.66 16 18 C 0.51 9.37 7.70 -10.99 -0.08 9.28 16 19 O -0.53 -10.95 14.86 5.56 0.08 -10.87 16 20 C 0.12 1.85 5.54 -5.20 -0.03 1.82 16 21 N -0.34 -5.56 3.40 -62.51 -0.21 -5.77 16 22 C 0.07 0.95 11.43 -17.16 -0.20 0.76 16 23 C -0.19 -2.58 6.65 -39.97 -0.27 -2.84 16 24 Cl -0.05 -0.63 29.30 -51.86 -1.52 -2.15 16 25 C 0.05 0.75 12.02 -17.33 -0.21 0.54 16 26 N -0.24 -4.34 11.65 30.64 0.36 -3.98 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.03 0.55 5.50 -51.93 -0.29 0.27 16 29 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 30 H 0.09 1.48 7.37 -51.93 -0.38 1.09 16 31 H 0.10 1.48 8.02 -51.93 -0.42 1.06 16 32 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.16 2.58 7.61 -52.49 -0.40 2.18 16 36 H 0.12 1.56 7.33 -51.93 -0.38 1.18 16 37 H 0.14 2.31 8.00 -51.93 -0.42 1.89 16 38 H 0.18 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.19 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -30.43 357.93 -7.75 -38.18 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.37 Total: 6.82 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.02 Total: 0.76 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.35 Total: -51.43 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.67 Total: 13.29 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.52 Total: -2.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.43 -7.75 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288113605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.570 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds