Wall clock time and date at job start Tue Mar 31 2020 17:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99605 * 2 1 4 4 H 1.48507 * 109.46942 * 269.99870 * 3 2 1 5 5 H 1.48497 * 109.47404 * 29.99801 * 3 2 1 6 6 H 1.48500 * 109.47286 * 150.00327 * 3 2 1 7 7 C 1.37874 * 120.00680 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47108 * 179.97438 * 10 9 7 12 12 S 1.81407 * 109.46908 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54052 * 68.37719 * 12 11 10 14 14 O 1.42097 * 110.54444 * 291.63104 * 12 11 10 15 15 N 1.65598 * 104.44849 * 180.02562 * 12 11 10 16 16 C 1.47347 * 121.40159 * 257.13148 * 15 12 11 17 17 C 1.52992 * 108.28948 * 118.57319 * 16 15 12 18 18 N 1.45641 * 110.77541 * 46.68500 * 17 16 15 19 19 C 1.33387 * 124.58601 * 338.10099 * 18 17 16 20 20 O 1.21285 * 118.48468 * 184.29222 * 19 18 17 21 21 C 1.47040 * 121.35743 * 77.01425 * 15 12 11 22 22 H 1.09001 * 109.56979 * 102.77134 * 21 15 12 23 23 C 1.53003 * 109.56553 * 342.53646 * 21 15 12 24 24 C 1.50697 * 109.47494 * 173.16609 * 23 21 15 25 25 O 1.20830 * 119.99824 * 352.35528 * 24 23 21 26 26 O 1.34230 * 120.00500 * 172.34243 * 24 23 21 27 27 H 0.97000 * 120.00769 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47735 * 59.98875 * 9 7 2 29 29 H 1.09003 * 109.46438 * 299.99316 * 9 7 2 30 30 H 1.09007 * 109.46804 * 59.99453 * 10 9 7 31 31 H 1.08996 * 109.46812 * 299.99875 * 10 9 7 32 32 H 1.08997 * 109.47155 * 60.00352 * 11 10 9 33 33 H 1.08999 * 109.47456 * 299.99544 * 11 10 9 34 34 H 1.09007 * 109.70173 * 358.85203 * 16 15 12 35 35 H 1.09000 * 109.63967 * 238.25750 * 16 15 12 36 36 H 1.09006 * 109.21835 * 286.35070 * 17 16 15 37 37 H 1.08999 * 109.18567 * 166.99897 * 17 16 15 38 38 H 0.97003 * 117.71175 * 158.12332 * 18 17 16 39 39 H 1.09007 * 109.47353 * 53.16732 * 23 21 15 40 40 H 1.09001 * 109.47363 * 293.17158 * 23 21 15 41 41 H 0.96701 * 117.00251 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 16 2.6596 -6.3658 0.0004 13 8 3.3572 -6.4259 1.2370 14 8 3.3555 -6.4261 -1.2370 15 7 1.7093 -7.7220 0.0005 16 6 1.4986 -8.5117 1.2265 17 6 0.0051 -8.4948 1.5578 18 7 -0.7907 -8.7735 0.3702 19 6 -0.3660 -8.6040 -0.8828 20 8 -1.1481 -8.7959 -1.7896 21 6 1.0387 -8.1864 -1.2229 22 1 1.5819 -9.0358 -1.6370 23 6 1.0017 -7.0522 -2.2491 24 6 0.4675 -7.5756 -3.5574 25 8 0.2794 -8.7603 -3.7025 26 8 0.2004 -6.7257 -4.5615 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8895 29 1 0.6244 -2.5566 0.8904 30 1 2.8723 -3.6041 0.8905 31 1 2.8721 -3.6042 -0.8894 32 1 0.8537 -5.0451 -0.8886 33 1 0.8543 -5.0446 0.8914 34 1 2.0627 -8.0714 2.0487 35 1 1.8272 -9.5379 1.0622 36 1 -0.2647 -7.5134 1.9482 37 1 -0.2026 -9.2513 2.3145 38 1 -1.6929 -9.1055 0.4996 39 1 2.0092 -6.6634 -2.3975 40 1 0.3543 -6.2541 -1.8855 41 1 -0.1402 -7.1083 -5.3817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:00 Heat of formation + Delta-G solvation = -183.493330 kcal Electronic energy + Delta-G solvation = -28275.401114 eV Core-core repulsion = 24090.194185 eV Total energy + Delta-G solvation = -4185.206929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.112 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07585 -39.74613 -37.48961 -37.19140 -36.16403 -36.06452 -34.92912 -34.76475 -32.35046 -31.79056 -28.97065 -27.96385 -25.89998 -24.18106 -23.69040 -21.62852 -20.82978 -19.93197 -19.15835 -18.24440 -18.00649 -17.64734 -16.93170 -16.77878 -16.57517 -16.09018 -15.88094 -15.67184 -15.43274 -14.94115 -14.54918 -14.49082 -14.24492 -13.67608 -13.33116 -13.07925 -13.03191 -12.86188 -12.49768 -12.36145 -12.27488 -12.09168 -11.95804 -11.70528 -11.47780 -11.42845 -11.32247 -10.96028 -10.94467 -10.64681 -10.49334 -10.32767 -10.03375 -9.59187 -9.43955 -9.31383 -9.12694 -8.45170 -6.09951 -4.13555 0.08014 2.09392 2.29056 2.35096 2.88304 2.97168 3.27888 3.34422 3.37710 3.63625 3.90887 3.93932 4.09701 4.32788 4.38731 4.53071 4.63111 4.79810 4.90942 4.96935 5.07804 5.20246 5.25466 5.26792 5.36585 5.42598 5.52757 5.74670 5.83245 6.14403 6.31163 6.45092 6.52939 6.76397 6.94196 7.50372 7.59131 7.87186 7.87322 7.94755 8.26696 8.92512 9.51704 11.01130 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.003663 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.223750 B = 7641.801416 C = 8384.357177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.613 4.613 12 S 2.594 3.406 13 O -0.948 6.948 14 O -0.951 6.951 15 N -1.007 6.007 16 C 0.102 3.898 17 C 0.091 3.909 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.522 6.522 21 C 0.164 3.836 22 H 0.125 0.875 23 C -0.188 4.188 24 C 0.499 3.501 25 O -0.492 6.492 26 O -0.513 6.513 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.171 0.829 40 H 0.119 0.881 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -19.404 1.359 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.745 4.745 12 S 2.693 3.307 13 O -0.939 6.939 14 O -0.941 6.941 15 N -0.844 5.844 16 C -0.023 4.023 17 C -0.035 4.035 18 N -0.369 5.369 19 C 0.296 3.704 20 O -0.397 6.397 21 C 0.055 3.945 22 H 0.142 0.858 23 C -0.226 4.226 24 C 0.339 3.661 25 O -0.378 6.378 26 O -0.325 6.325 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.237 0.763 39 H 0.188 0.812 40 H 0.137 0.863 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 0.483 -19.521 1.185 19.563 hybrid contribution -0.972 0.767 -0.292 1.272 sum -0.489 -18.754 0.893 18.781 Atomic orbital electron populations 1.69949 1.06102 1.26867 1.50394 1.25009 0.94867 0.99375 0.95010 0.86561 0.79865 0.83170 0.78243 1.20525 1.21177 1.19731 1.21222 0.93241 0.90799 1.51335 0.92327 1.19067 0.93470 0.90350 0.97853 1.21542 0.99443 0.91286 1.02207 1.30850 1.16171 1.15719 1.11776 1.05745 0.75804 0.74809 0.74388 1.93561 1.70084 1.85594 1.44658 1.93447 1.70469 1.85732 1.44419 1.58251 1.67677 1.43756 1.14718 1.21899 0.95424 0.97841 0.87128 1.21847 0.91478 1.02837 0.87382 1.45296 1.18451 1.67751 1.05413 1.20101 0.89899 0.77566 0.82803 1.90860 1.54132 1.50040 1.44624 1.20727 0.90870 0.98573 0.84327 0.85755 1.22590 1.09297 0.99500 0.91232 1.22166 0.74472 0.84387 0.85038 1.90741 1.47906 1.17462 1.81721 1.84505 1.78158 1.43907 1.25924 0.92840 0.95993 0.96078 0.91373 0.91298 0.85171 0.84895 0.85914 0.89556 0.90655 0.88899 0.76262 0.81209 0.86286 0.72922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -1.95 5.16 -26.73 -0.14 -2.09 16 11 C -0.61 -8.42 5.89 37.16 0.22 -8.20 16 12 S 2.59 33.46 4.85 -107.50 -0.52 32.94 16 13 O -0.95 -14.07 16.40 -57.54 -0.94 -15.02 16 14 O -0.95 -14.24 14.75 -57.54 -0.85 -15.09 16 15 N -1.01 -10.10 3.22 -107.65 -0.35 -10.45 16 16 C 0.10 0.72 6.54 -3.58 -0.02 0.69 16 17 C 0.09 0.51 7.34 -4.51 -0.03 0.48 16 18 N -0.72 -5.94 5.42 -61.32 -0.33 -6.27 16 19 C 0.51 6.07 7.32 -11.73 -0.09 5.98 16 20 O -0.52 -8.13 14.43 -17.77 -0.26 -8.39 16 21 C 0.16 1.85 2.73 -68.92 -0.19 1.66 16 22 H 0.12 1.36 7.77 -51.93 -0.40 0.96 16 23 C -0.19 -2.30 4.00 -27.88 -0.11 -2.41 16 24 C 0.50 6.70 7.40 36.00 0.27 6.96 16 25 O -0.49 -7.67 14.55 -26.48 -0.39 -8.05 16 26 O -0.51 -5.88 13.42 -39.26 -0.53 -6.40 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.13 1.63 5.27 -51.93 -0.27 1.36 16 33 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 34 H 0.12 0.80 6.73 -51.92 -0.35 0.45 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.40 2.87 8.80 -40.82 -0.36 2.51 16 39 H 0.17 2.11 4.68 -52.00 -0.24 1.87 16 40 H 0.12 1.33 5.72 -51.93 -0.30 1.03 16 41 H 0.41 2.85 9.10 45.56 0.41 3.27 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -37.75 346.37 -8.31 -46.05 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.43 Total: 4.03 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.64 Total: -9.41 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.06 Total: -41.92 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -2.96 Total: -52.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.52 Total: 32.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.75 -8.31 -46.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.442 kcal (2) G-P(sol) polarization free energy of solvation -37.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds