Wall clock time and date at job start Tue Mar 31 2020 17:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99605 * 2 1 4 4 H 1.48507 * 109.46942 * 269.99870 * 3 2 1 5 5 H 1.48497 * 109.47404 * 29.99801 * 3 2 1 6 6 H 1.48500 * 109.47286 * 150.00327 * 3 2 1 7 7 C 1.37874 * 120.00680 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47108 * 179.97438 * 10 9 7 12 12 S 1.81407 * 109.46908 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54052 * 68.37719 * 12 11 10 14 14 O 1.42097 * 110.54444 * 291.63104 * 12 11 10 15 15 N 1.65598 * 104.44849 * 180.02562 * 12 11 10 16 16 C 1.47347 * 121.40159 * 257.13148 * 15 12 11 17 17 C 1.52992 * 108.28948 * 118.57319 * 16 15 12 18 18 N 1.45641 * 110.77541 * 46.68500 * 17 16 15 19 19 C 1.33387 * 124.58601 * 338.10099 * 18 17 16 20 20 O 1.21285 * 118.48468 * 184.29222 * 19 18 17 21 21 C 1.47040 * 121.35743 * 77.01425 * 15 12 11 22 22 H 1.09001 * 109.56979 * 102.77134 * 21 15 12 23 23 C 1.53003 * 109.56553 * 342.53646 * 21 15 12 24 24 C 1.50697 * 109.47494 * 173.16609 * 23 21 15 25 25 O 1.20830 * 119.99824 * 352.35528 * 24 23 21 26 26 O 1.34230 * 120.00500 * 172.34243 * 24 23 21 27 27 H 0.97000 * 120.00769 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47735 * 59.98875 * 9 7 2 29 29 H 1.09003 * 109.46438 * 299.99316 * 9 7 2 30 30 H 1.09007 * 109.46804 * 59.99453 * 10 9 7 31 31 H 1.08996 * 109.46812 * 299.99875 * 10 9 7 32 32 H 1.08997 * 109.47155 * 60.00352 * 11 10 9 33 33 H 1.08999 * 109.47456 * 299.99544 * 11 10 9 34 34 H 1.09007 * 109.70173 * 358.85203 * 16 15 12 35 35 H 1.09000 * 109.63967 * 238.25750 * 16 15 12 36 36 H 1.09006 * 109.21835 * 286.35070 * 17 16 15 37 37 H 1.08999 * 109.18567 * 166.99897 * 17 16 15 38 38 H 0.97003 * 117.71175 * 158.12332 * 18 17 16 39 39 H 1.09007 * 109.47353 * 53.16732 * 23 21 15 40 40 H 1.09001 * 109.47363 * 293.17158 * 23 21 15 41 41 H 0.96701 * 117.00251 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 16 2.6596 -6.3658 0.0004 13 8 3.3572 -6.4259 1.2370 14 8 3.3555 -6.4261 -1.2370 15 7 1.7093 -7.7220 0.0005 16 6 1.4986 -8.5117 1.2265 17 6 0.0051 -8.4948 1.5578 18 7 -0.7907 -8.7735 0.3702 19 6 -0.3660 -8.6040 -0.8828 20 8 -1.1481 -8.7959 -1.7896 21 6 1.0387 -8.1864 -1.2229 22 1 1.5819 -9.0358 -1.6370 23 6 1.0017 -7.0522 -2.2491 24 6 0.4675 -7.5756 -3.5574 25 8 0.2794 -8.7603 -3.7025 26 8 0.2004 -6.7257 -4.5615 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8895 29 1 0.6244 -2.5566 0.8904 30 1 2.8723 -3.6041 0.8905 31 1 2.8721 -3.6042 -0.8894 32 1 0.8537 -5.0451 -0.8886 33 1 0.8543 -5.0446 0.8914 34 1 2.0627 -8.0714 2.0487 35 1 1.8272 -9.5379 1.0622 36 1 -0.2647 -7.5134 1.9482 37 1 -0.2026 -9.2513 2.3145 38 1 -1.6929 -9.1055 0.4996 39 1 2.0092 -6.6634 -2.3975 40 1 0.3543 -6.2541 -1.8855 41 1 -0.1402 -7.1083 -5.3817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:00 Heat of formation + Delta-G solvation = -214.354754 kcal Electronic energy + Delta-G solvation = -28276.739366 eV Core-core repulsion = 24090.194185 eV Total energy + Delta-G solvation = -4186.545181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97828 -40.68232 -38.58449 -38.04690 -37.20546 -37.11491 -36.49267 -35.67032 -34.19463 -32.69843 -29.80497 -29.57810 -26.83459 -25.60579 -24.73506 -22.64701 -22.28287 -20.91553 -20.05471 -19.22301 -18.90406 -18.63437 -18.48977 -17.81402 -17.53221 -17.30559 -16.92752 -16.66623 -16.46580 -16.28031 -15.91572 -15.59706 -15.16422 -14.55737 -14.43372 -14.29897 -14.11257 -13.99734 -13.74676 -13.56936 -13.47763 -13.29977 -13.03974 -12.84106 -12.73268 -12.68086 -12.57951 -12.43161 -12.27485 -12.17895 -11.74325 -11.61436 -11.41661 -11.31625 -10.98028 -10.55099 -10.24711 -10.02440 -8.20434 -6.30967 -0.97497 1.16120 1.29946 1.42565 1.42864 1.45402 1.53911 2.06221 2.14542 2.41519 2.60545 2.92956 3.05594 3.13910 3.35739 3.57420 3.62689 3.80596 3.89939 3.99622 4.26341 4.35837 4.37975 4.43326 4.48064 4.60138 4.66846 4.80314 4.93954 4.99770 5.09139 5.11869 5.48729 5.64370 5.65792 5.80666 5.82180 6.19805 6.21814 6.85348 7.00352 7.11637 7.38663 8.90868 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.003663 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.223750 B = 7641.801416 C = 8384.357177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.104 4.104 11 C -0.618 4.618 12 S 2.622 3.378 13 O -0.964 6.964 14 O -0.971 6.971 15 N -0.997 5.997 16 C 0.090 3.910 17 C 0.086 3.914 18 N -0.703 5.703 19 C 0.510 3.490 20 O -0.567 6.567 21 C 0.168 3.832 22 H 0.127 0.873 23 C -0.195 4.195 24 C 0.499 3.501 25 O -0.517 6.517 26 O -0.515 6.515 27 H 0.264 0.736 28 H 0.001 0.999 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.409 0.591 39 H 0.170 0.830 40 H 0.126 0.874 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -20.118 2.547 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.749 4.749 12 S 2.719 3.281 13 O -0.954 6.954 14 O -0.961 6.961 15 N -0.836 5.836 16 C -0.033 4.033 17 C -0.039 4.039 18 N -0.355 5.355 19 C 0.294 3.706 20 O -0.445 6.445 21 C 0.058 3.942 22 H 0.145 0.855 23 C -0.233 4.233 24 C 0.340 3.660 25 O -0.406 6.406 26 O -0.329 6.329 27 H 0.073 0.927 28 H 0.020 0.980 29 H 0.023 0.977 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.246 0.754 39 H 0.186 0.814 40 H 0.144 0.856 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.084 -20.219 2.410 20.391 hybrid contribution -1.185 0.930 -0.636 1.635 sum -0.101 -19.290 1.774 19.371 Atomic orbital electron populations 1.70065 1.07639 1.27801 1.51538 1.25892 0.95719 1.03118 0.94687 0.85529 0.78821 0.78759 0.78473 1.19927 1.20801 1.18702 1.21744 0.93806 0.92419 1.50774 0.91949 1.18963 0.94040 0.91816 0.95969 1.21321 0.98618 0.91843 1.02576 1.30848 1.16639 1.14000 1.13407 1.04738 0.75247 0.74657 0.73414 1.93538 1.70570 1.85972 1.45350 1.93426 1.71224 1.86093 1.45406 1.57977 1.67245 1.42791 1.15610 1.22306 0.96683 0.98475 0.85883 1.22142 0.90087 1.04831 0.86846 1.45297 1.19053 1.66073 1.05083 1.20151 0.89629 0.77383 0.83436 1.90843 1.55080 1.52347 1.46217 1.20659 0.90935 0.98242 0.84315 0.85523 1.22679 1.09193 1.00165 0.91278 1.22374 0.73925 0.84133 0.85559 1.90725 1.49118 1.18470 1.82252 1.84475 1.77936 1.43816 1.26670 0.92743 0.98012 0.97732 0.90971 0.91126 0.84222 0.82904 0.85002 0.87572 0.89766 0.84954 0.75431 0.81376 0.85579 0.70865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -30.01 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.49 4.97 29.85 0.15 1.63 16 10 C -0.10 -3.84 5.16 30.59 0.16 -3.68 16 11 C -0.62 -16.33 5.89 71.98 0.42 -15.90 16 12 S 2.62 63.56 4.85 -56.49 -0.27 63.29 16 13 O -0.96 -26.69 16.40 -127.65 -2.09 -28.78 16 14 O -0.97 -28.14 14.75 -127.65 -1.88 -30.02 16 15 N -1.00 -17.94 3.22 -494.51 -1.59 -19.53 16 16 C 0.09 0.97 6.54 86.21 0.56 1.54 16 17 C 0.09 0.66 7.34 86.54 0.64 1.29 16 18 N -0.70 -9.98 5.42 -467.08 -2.53 -12.51 16 19 C 0.51 11.45 7.32 87.79 0.64 12.09 16 20 O -0.57 -17.52 14.43 19.25 0.28 -17.24 16 21 C 0.17 3.58 2.73 44.06 0.12 3.70 16 22 H 0.13 2.66 7.77 -2.39 -0.02 2.65 16 23 C -0.20 -4.67 4.00 29.85 0.12 -4.55 16 24 C 0.50 13.36 7.40 71.24 0.53 13.88 16 25 O -0.52 -16.22 14.55 29.34 0.43 -15.79 16 26 O -0.51 -11.66 13.42 -51.41 -0.69 -12.35 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.14 3.40 5.27 -2.39 -0.01 3.39 16 33 H 0.15 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.13 1.27 6.73 -2.38 -0.02 1.26 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.41 4.92 8.80 -92.71 -0.82 4.10 16 39 H 0.17 4.12 4.68 -3.62 -0.02 4.10 16 40 H 0.13 2.76 5.72 -2.39 -0.01 2.75 16 41 H 0.43 5.80 9.10 -74.06 -0.67 5.12 16 Total: -1.00 -81.97 346.37 -2.41 -84.38 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.40 Total: 16.93 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.03 Total: -19.09 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.84 Total: -86.43 kcal Atomic # 8 Polarization: -100.23 SS G_CDS: -3.96 Total: -104.19 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 63.56 SS G_CDS: -0.27 Total: 63.29 kcal Total: -81.97 -2.41 -84.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.978 kcal (2) G-P(sol) polarization free energy of solvation -81.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds