Wall clock time and date at job start Tue Mar 31 2020 17:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 N 1.46500 * 109.46954 * 240.00459 * 2 1 3 5 5 C 1.34777 * 120.00446 * 59.99704 * 4 2 1 6 6 O 1.21278 * 119.99667 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00326 * 179.97438 * 5 4 2 8 8 F 1.39898 * 109.47092 * 179.97438 * 7 5 4 9 9 F 1.39896 * 109.47392 * 300.00333 * 7 5 4 10 10 F 1.39903 * 109.46979 * 60.00087 * 7 5 4 11 11 C 1.50700 * 109.47452 * 120.00134 * 2 1 3 12 12 O 1.21303 * 119.99816 * 264.99934 * 11 2 1 13 13 N 1.34777 * 119.99675 * 85.27804 * 11 2 1 14 14 C 1.40595 * 119.99527 * 179.72943 * 13 11 2 15 15 C 1.40649 * 126.08553 * 359.68015 * 14 13 11 16 16 N 1.30903 * 108.38945 * 179.87998 * 15 14 13 17 17 N 1.40074 * 108.40705 * 0.38914 * 16 15 14 18 18 C 1.37320 * 126.07077 * 179.73305 * 17 16 15 19 19 H 1.07999 * 120.00028 * 180.02562 * 18 17 16 20 20 C 1.38983 * 120.00055 * 0.02562 * 18 17 16 21 21 N 1.31296 * 119.99923 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00025 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46692 * 90.00217 * 22 20 18 24 24 H 1.48503 * 109.47299 * 209.99837 * 22 20 18 25 25 H 1.48503 * 109.47411 * 330.00357 * 22 20 18 26 26 C 1.35679 * 126.07814 * 179.97438 * 14 13 11 27 27 H 1.08999 * 109.47091 * 299.99643 * 1 2 3 28 28 H 1.08996 * 109.47622 * 59.99971 * 1 2 3 29 29 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47138 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47211 * 299.99916 * 3 2 1 32 32 H 1.08999 * 109.46935 * 60.00262 * 3 2 1 33 33 H 0.97002 * 120.00000 * 239.99732 * 4 2 1 34 34 H 0.97001 * 120.00485 * 359.71840 * 13 11 2 35 35 H 1.07999 * 125.80209 * 0.02562 * 15 14 13 36 36 H 0.97004 * 120.00252 * 179.97438 * 21 20 18 37 37 H 1.07996 * 126.24944 * 359.92772 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6927 -0.2301 -2.4203 6 8 0.9958 0.7562 -2.5315 7 6 2.1954 -0.9401 -3.6508 8 9 1.7285 -0.2809 -4.7930 9 9 3.5944 -0.9395 -3.6507 10 9 1.7296 -2.2593 -3.6511 11 6 2.0324 -0.7104 1.2304 12 8 2.3209 -0.0747 2.2224 13 7 2.1665 -2.0515 1.2267 14 6 2.6406 -2.7137 2.3727 15 6 3.0166 -2.1064 3.5843 16 7 3.4009 -3.0432 4.4140 17 7 3.2945 -4.2799 3.7648 18 6 3.6093 -5.5043 4.3009 19 1 3.4894 -6.3998 3.7093 20 6 4.0824 -5.5910 5.6049 21 7 4.2277 -4.5023 6.3243 22 14 4.5100 -7.2566 6.3345 23 1 5.9365 -7.5655 6.0603 24 1 4.2832 -7.2273 7.8018 25 1 3.6506 -8.3010 5.7214 26 6 2.8220 -4.0518 2.5046 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 2.5760 -1.4792 -1.1073 34 1 1.9357 -2.5598 0.4334 35 1 2.9903 -1.0476 3.7951 36 1 4.5575 -4.5628 7.2345 37 1 2.6279 -4.8000 1.7504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760211607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:58 Heat of formation + Delta-G solvation = -125.774092 kcal Electronic energy + Delta-G solvation = -28999.884354 eV Core-core repulsion = 24172.172378 eV Total energy + Delta-G solvation = -4827.711975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.69309 -48.21534 -48.18124 -41.13426 -39.89013 -38.83972 -35.98891 -34.51310 -33.24202 -32.35795 -30.34071 -28.11413 -27.91339 -27.42485 -25.27787 -23.79055 -21.94385 -21.04192 -20.17852 -19.64857 -19.52704 -19.13518 -18.90473 -17.81919 -17.09155 -16.44619 -15.63580 -15.58158 -15.36950 -15.18185 -14.91152 -14.85819 -14.57955 -14.52723 -14.32461 -14.28507 -14.28289 -13.89678 -13.66812 -13.53794 -13.06245 -12.97741 -12.59568 -12.21303 -12.08088 -11.73494 -11.59630 -11.54889 -11.32263 -11.04989 -10.66261 -10.58943 -10.35955 -9.91352 -9.37540 -9.27842 -8.91632 -8.16943 -6.85862 -6.63920 -4.32362 1.32657 1.41096 2.46492 2.73866 2.94775 2.99569 3.05611 3.15343 3.28810 3.56154 3.66023 3.72270 3.78405 4.27869 4.38901 4.65423 4.73019 4.93166 4.94300 5.18655 5.46591 5.51777 5.65520 5.87432 5.90732 6.09294 6.13180 6.29444 6.50479 6.72944 6.83948 6.91174 7.07075 7.12524 7.75459 7.93910 8.13861 8.43089 8.64775 9.27182 9.55964 10.31811 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002741 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.336786 B =10211.574523 C =11168.050166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.163 3.837 3 C -0.152 4.152 4 N -0.695 5.695 5 C 0.490 3.510 6 O -0.469 6.469 7 C 0.450 3.550 8 F -0.153 7.153 9 F -0.165 7.165 10 F -0.166 7.166 11 C 0.500 3.500 12 O -0.514 6.514 13 N -0.618 5.618 14 C -0.068 4.068 15 C -0.029 4.029 16 N -0.260 5.260 17 N -0.139 5.139 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.082 4.082 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.411 0.589 34 H 0.394 0.606 35 H 0.176 0.824 36 H 0.276 0.724 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 4.589 -17.006 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.076 3.924 3 C -0.210 4.210 4 N -0.351 5.351 5 C 0.268 3.732 6 O -0.340 6.340 7 C 0.391 3.609 8 F -0.134 7.134 9 F -0.147 7.147 10 F -0.147 7.147 11 C 0.284 3.716 12 O -0.388 6.388 13 N -0.261 5.261 14 C -0.173 4.173 15 C -0.205 4.205 16 N -0.091 5.091 17 N 0.094 4.906 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.171 4.171 21 N -0.394 5.394 22 Si 0.759 3.241 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.188 1.188 26 C -0.233 4.233 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.227 0.773 35 H 0.193 0.807 36 H 0.087 0.913 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.386 5.587 -14.930 16.534 hybrid contribution 0.156 -1.527 -1.254 1.982 sum -4.230 4.060 -16.184 17.213 Atomic orbital electron populations 1.22217 0.91160 1.03679 1.04983 1.20915 0.96662 0.94248 0.80614 1.22074 1.02011 0.92438 1.04471 1.46194 1.52282 1.31997 1.04597 1.20218 0.82873 0.85926 0.84206 1.90828 1.34920 1.23475 1.84821 1.20293 0.76478 0.77983 0.86096 1.93272 1.88233 1.80516 1.51410 1.93289 1.28445 1.96217 1.96731 1.93284 1.88311 1.36399 1.96745 1.19947 0.80342 0.82259 0.89053 1.90659 1.48957 1.65564 1.33630 1.42571 1.62850 1.06023 1.14635 1.17234 1.19614 0.90782 0.89707 1.24098 1.05387 0.99990 0.90983 1.78288 1.25096 0.87059 1.18645 1.44576 1.34235 1.05878 1.05902 1.19905 1.45302 0.81979 0.98357 0.86503 1.25656 0.95734 0.99511 0.96211 1.70209 1.32562 1.27751 1.08857 0.85812 0.79374 0.80265 0.78625 1.19525 1.20034 1.18759 1.21254 1.15728 0.94640 0.91686 0.89927 0.89401 0.91549 0.91673 0.89997 0.89573 0.75170 0.77282 0.80744 0.91342 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.38 37.16 0.31 -1.39 16 2 C 0.16 1.89 0.98 -132.97 -0.13 1.76 16 3 C -0.15 -1.75 7.93 37.16 0.29 -1.46 16 4 N -0.70 -6.57 4.86 -48.68 -0.24 -6.80 16 5 C 0.49 4.83 6.78 -10.99 -0.07 4.76 16 6 O -0.47 -5.57 12.82 5.56 0.07 -5.49 16 7 C 0.45 4.02 3.43 36.00 0.12 4.15 16 8 F -0.15 -1.52 16.92 2.25 0.04 -1.48 16 9 F -0.17 -1.48 17.30 2.25 0.04 -1.44 16 10 F -0.17 -1.40 17.30 2.25 0.04 -1.36 16 11 C 0.50 7.75 6.62 -10.98 -0.07 7.67 16 12 O -0.51 -9.95 13.25 5.54 0.07 -9.88 16 13 N -0.62 -9.69 5.16 -10.00 -0.05 -9.74 16 14 C -0.07 -1.45 6.90 -83.84 -0.58 -2.03 16 15 C -0.03 -0.73 10.85 -17.04 -0.18 -0.91 16 16 N -0.26 -7.28 10.40 30.80 0.32 -6.96 16 17 N -0.14 -3.65 3.74 -11.41 -0.04 -3.69 16 18 C -0.32 -8.24 10.25 -14.82 -0.15 -8.39 16 19 H 0.12 2.65 7.83 -52.49 -0.41 2.23 16 20 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 21 N -0.77 -20.85 11.81 55.49 0.66 -20.19 16 22 Si 0.94 18.32 29.55 -169.99 -5.02 13.29 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 26 C -0.08 -1.81 11.49 -16.39 -0.19 -2.00 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 0.91 6.17 -51.93 -0.32 0.59 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 32 H 0.09 1.02 7.87 -51.93 -0.41 0.61 16 33 H 0.41 3.31 7.23 -40.82 -0.30 3.01 16 34 H 0.39 4.62 7.56 -40.82 -0.31 4.31 16 35 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 36 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.15 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -31.67 333.08 -3.05 -34.71 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.20 Total: 10.80 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.75 Total: 3.22 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.65 Total: -47.38 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.14 Total: -15.38 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.12 Total: -4.29 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.67 -3.05 -34.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760211607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.060 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds