Wall clock time and date at job start Tue Mar 31 2020 17:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48507 * 109.46746 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99626 * 3 2 1 6 6 H 1.48499 * 109.47401 * 150.00170 * 3 2 1 7 7 C 1.38815 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.91430 * 322.54457 * 10 9 7 12 12 C 1.55448 * 111.11836 * 198.55593 * 10 9 7 13 13 C 1.54321 * 102.96961 * 206.45988 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.34780 * 125.64285 * 181.07596 * 14 13 12 16 16 O 1.21630 * 119.99440 * 179.97438 * 15 14 13 17 17 C 1.47315 * 120.00315 * 359.97438 * 15 14 13 18 18 C 1.35197 * 122.42916 * 179.73148 * 17 15 14 19 19 S 1.71005 * 109.10489 * 179.89589 * 18 17 15 20 20 C 1.76000 * 90.57523 * 0.30411 * 19 18 17 21 21 C 1.47940 * 125.31749 * 179.84601 * 20 19 18 22 22 N 1.34107 * 125.66481 * 179.66678 * 21 20 19 23 23 C 1.30630 * 109.77899 * 179.81221 * 22 21 20 24 24 N 1.34575 * 108.32505 * 0.44477 * 23 22 21 25 25 H 0.97008 * 126.72769 * 179.73080 * 24 23 22 26 26 N 1.31635 * 125.67191 * 359.96926 * 21 20 19 27 27 N 1.29831 * 109.36176 * 359.81667 * 20 19 18 28 28 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 29 29 H 0.97000 * 120.00104 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00105 * 359.97438 * 9 7 2 31 31 H 1.08998 * 110.70855 * 88.08792 * 12 10 9 32 32 H 1.08997 * 110.70436 * 324.83540 * 12 10 9 33 33 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 34 34 H 1.09000 * 109.88483 * 141.60664 * 13 12 10 35 35 H 1.08002 * 125.44587 * 0.02562 * 18 17 15 36 36 H 1.07996 * 125.83870 * 180.16788 * 23 22 21 37 37 H 1.09002 * 110.36926 * 94.70918 * 28 14 13 38 38 H 1.08995 * 110.36556 * 216.92202 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9530 -3.5900 -0.6169 12 6 1.1478 -4.8294 -0.4600 13 6 1.7858 -6.0546 0.2279 14 7 2.5600 -5.5574 1.3747 15 6 3.2850 -6.3155 2.2209 16 8 3.8886 -5.7943 3.1392 17 6 3.3464 -7.7754 2.0336 18 6 4.0623 -8.5816 2.8494 19 16 3.8925 -10.2007 2.3260 20 6 2.8515 -9.6831 1.0047 21 6 2.2355 -10.5777 0.0003 22 7 1.4365 -10.1918 -1.0052 23 6 1.0720 -11.2330 -1.7048 24 7 1.6266 -12.3283 -1.1537 25 1 1.5281 -13.2441 -1.4581 26 7 2.3761 -11.8855 -0.0516 27 7 2.7081 -8.3935 1.0495 28 6 2.4120 -4.0924 1.4455 29 1 -0.4850 0.8400 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 1.1777 -4.9368 -1.5442 32 1 0.1247 -4.6822 -0.1141 33 1 2.4463 -6.5693 -0.4700 34 1 1.0063 -6.7337 0.5732 35 1 4.6462 -8.2553 3.6974 36 1 0.4311 -11.2180 -2.5739 37 1 1.6074 -3.8249 2.1305 38 1 3.3476 -3.6315 1.7620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970252492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:29 Heat of formation + Delta-G solvation = 105.750291 kcal Electronic energy + Delta-G solvation = -25179.630159 eV Core-core repulsion = 21378.860197 eV Total energy + Delta-G solvation = -3800.769962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.095 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.10420 -41.72772 -40.00169 -38.61600 -35.94638 -34.09407 -33.34659 -32.77696 -31.32775 -31.08000 -29.43509 -27.24929 -26.10964 -24.79577 -23.84606 -23.32322 -21.67012 -21.10782 -20.38778 -19.57341 -19.27901 -19.11827 -17.54646 -17.34446 -17.17315 -16.77872 -16.37956 -16.14154 -15.89068 -15.68436 -15.31852 -14.91313 -14.83489 -14.45085 -14.28340 -13.80205 -13.73494 -13.29894 -13.20319 -12.97901 -12.86748 -12.55103 -12.36370 -12.05944 -11.77946 -11.70804 -11.62760 -11.37131 -11.20860 -11.12009 -11.01197 -10.89520 -10.68371 -9.92715 -9.61830 -9.07688 -7.96157 -5.26414 -0.92792 -0.06569 0.28648 0.35059 0.94609 1.48411 1.49811 1.52587 1.58420 1.89845 1.93965 2.27835 2.54148 2.58173 3.20052 3.35608 3.60712 3.69386 3.86745 4.00279 4.00692 4.09767 4.20994 4.29894 4.40587 4.49053 4.59618 4.77578 4.96196 4.98442 5.04432 5.07764 5.15459 5.24316 5.38499 5.53134 6.12971 6.25053 6.25450 6.44686 6.93438 6.96982 7.32636 8.02961 8.28860 9.26703 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.002618 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.276705 B =10692.270088 C =11999.009062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.722 5.722 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.129 4.129 13 C 0.136 3.864 14 N -0.597 5.597 15 C 0.594 3.406 16 O -0.577 6.577 17 C -0.007 4.007 18 C -0.209 4.209 19 S 0.322 5.678 20 C 0.087 3.913 21 C 0.281 3.719 22 N -0.551 5.551 23 C 0.288 3.712 24 N -0.458 5.458 25 H 0.466 0.534 26 N -0.307 5.307 27 N -0.409 5.409 28 C 0.094 3.906 29 H 0.253 0.747 30 H 0.379 0.621 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.209 0.791 36 H 0.280 0.720 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -33.562 -3.091 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.361 5.361 10 C 0.058 3.942 11 H 0.081 0.919 12 C -0.167 4.167 13 C 0.014 3.986 14 N -0.328 5.328 15 C 0.381 3.619 16 O -0.458 6.458 17 C -0.144 4.144 18 C -0.353 4.353 19 S 0.578 5.422 20 C -0.191 4.191 21 C -0.002 4.002 22 N -0.280 5.280 23 C -0.010 4.010 24 N -0.180 5.180 25 H 0.317 0.683 26 N -0.142 5.142 27 N -0.126 5.126 28 C -0.032 4.032 29 H 0.062 0.938 30 H 0.212 0.788 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.296 0.704 37 H 0.070 0.930 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.667 -33.940 -2.211 34.330 hybrid contribution -0.331 1.786 0.008 1.817 sum 4.336 -32.153 -2.203 32.519 Atomic orbital electron populations 1.69801 1.06494 1.26229 1.58977 1.25540 0.96386 1.00992 1.03264 0.85170 0.77638 0.79567 0.77557 1.21025 1.22117 1.19834 1.19601 0.91445 0.85097 1.41755 0.90759 1.42409 1.05529 1.00316 1.87818 1.21476 0.95196 0.85680 0.91890 0.91910 1.22941 0.99155 0.92807 1.01806 1.21988 0.94873 0.95381 0.86381 1.48383 1.47178 1.08041 1.29203 1.17191 0.78607 0.84966 0.81152 1.90773 1.47574 1.73976 1.33491 1.19789 1.03353 0.94995 0.96253 1.27091 1.03648 0.98919 1.05625 1.83609 1.38902 1.01365 1.18323 1.24092 1.04016 0.90983 1.00052 1.20481 0.97187 0.88216 0.94304 1.70636 1.17058 1.32615 1.07683 1.27213 0.95182 0.79989 0.98643 1.48081 1.36491 1.12619 1.20793 0.68346 1.78136 1.18367 1.10231 1.07432 1.67017 1.19085 1.06738 1.19758 1.23061 1.00268 0.78483 1.01409 0.93842 0.78833 0.88306 0.90772 0.90101 0.90527 0.77446 0.70446 0.92964 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.13 13.06 21.65 0.28 -58.84 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -13.93 9.98 84.04 0.84 -13.09 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.72 -36.83 5.28 -315.89 -1.67 -38.49 16 10 C 0.17 6.97 3.70 46.48 0.17 7.14 16 11 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 12 C -0.13 -4.24 6.59 31.88 0.21 -4.03 16 13 C 0.14 4.28 5.45 86.73 0.47 4.75 16 14 N -0.60 -21.97 3.33 -815.79 -2.71 -24.68 16 15 C 0.59 21.84 7.83 86.63 0.68 22.52 16 16 O -0.58 -24.39 16.91 -4.13 -0.07 -24.46 16 17 C -0.01 -0.20 6.57 40.72 0.27 0.07 16 18 C -0.21 -4.56 10.56 67.12 0.71 -3.85 16 19 S 0.32 5.17 23.17 -56.49 -1.31 3.86 16 20 C 0.09 1.98 7.50 87.56 0.66 2.64 16 21 C 0.28 5.86 8.04 137.25 1.10 6.96 16 22 N -0.55 -10.67 11.22 -193.35 -2.17 -12.84 16 23 C 0.29 2.16 13.11 180.37 2.36 4.53 16 24 N -0.46 -3.05 7.44 -60.52 -0.45 -3.50 16 25 H 0.47 -1.02 8.96 -213.09 -1.91 -2.93 16 26 N -0.31 -4.94 12.84 -52.57 -0.67 -5.62 16 27 N -0.41 -11.32 7.56 -179.52 -1.36 -12.67 16 28 C 0.09 3.92 6.59 86.85 0.57 4.49 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 30 H 0.38 20.42 7.72 -92.70 -0.72 19.70 16 31 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 32 H 0.07 2.49 8.01 -2.39 -0.02 2.47 16 33 H 0.08 2.46 7.50 -2.39 -0.02 2.44 16 34 H 0.08 2.36 7.62 -2.39 -0.02 2.34 16 35 H 0.21 3.91 7.99 -2.91 -0.02 3.88 16 36 H 0.28 -1.21 8.06 -2.91 -0.02 -1.24 16 37 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 Total: -1.00 -81.75 347.55 -1.07 -82.81 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -1.48 Total: 16.98 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 8.51 Total: 28.58 kcal Atomic # 7 Polarization: -147.89 SS G_CDS: -8.75 Total: -156.64 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.07 Total: -24.46 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.31 Total: 3.86 kcal Total: -81.75 -1.07 -82.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970252492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.563 kcal (2) G-P(sol) polarization free energy of solvation -81.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds