Wall clock time and date at job start Tue Mar 31 2020 18:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39898 * 109.46931 * 2 1 4 4 F 1.39902 * 109.47002 * 240.00140 * 2 1 3 5 5 C 1.50701 * 109.46664 * 120.00290 * 2 1 3 6 6 O 1.21272 * 120.00218 * 25.00097 * 5 2 1 7 7 N 1.34777 * 119.99450 * 205.00098 * 5 2 1 8 8 C 1.49960 * 126.74907 * 0.35059 * 7 5 2 9 9 C 1.56017 * 104.10124 * 182.13793 * 8 7 5 10 10 H 1.09000 * 116.24483 * 159.12263 * 9 8 7 11 11 C 1.57082 * 100.41979 * 32.48868 * 9 8 7 12 12 C 1.49295 * 126.94034 * 180.02562 * 7 5 2 13 13 H 1.08996 * 116.15319 * 16.69953 * 12 7 5 14 14 C 1.56019 * 104.09012 * 246.69386 * 12 7 5 15 15 N 1.47872 * 105.10623 * 288.76780 * 14 12 7 16 16 C 1.34772 * 126.94609 * 182.26011 * 15 14 12 17 17 O 1.21284 * 119.99989 * 179.68253 * 16 15 14 18 18 C 1.50704 * 119.99970 * 359.69040 * 16 15 14 19 19 S 1.81002 * 109.47042 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99768 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00677 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00016 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99992 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00345 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47321 * 59.99440 * 24 22 20 26 26 H 1.48498 * 109.47151 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46870 * 299.99606 * 24 22 20 28 28 H 1.08998 * 109.47452 * 300.00108 * 1 2 3 29 29 H 1.09009 * 109.46778 * 59.99680 * 1 2 3 30 30 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09004 * 111.26944 * 63.32081 * 8 7 5 32 32 H 1.08993 * 110.31675 * 300.48459 * 8 7 5 33 33 H 1.08995 * 112.36689 * 64.06320 * 11 9 8 34 34 H 1.08997 * 112.36815 * 191.42054 * 11 9 8 35 35 H 1.09002 * 110.31598 * 169.86043 * 14 12 7 36 36 H 1.09002 * 110.31785 * 47.67446 * 14 12 7 37 37 H 1.09001 * 109.46964 * 299.99479 * 18 16 15 38 38 H 1.08993 * 109.46926 * 59.99721 * 18 16 15 39 39 H 0.97003 * 120.00016 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2305 6 8 1.3369 -1.5394 1.7783 7 7 3.2542 -0.4246 1.7220 8 6 4.2312 0.5721 1.1736 9 6 5.4768 0.4344 2.1030 10 1 6.4227 0.7938 1.6977 11 6 5.4007 -1.0945 2.4554 12 6 3.9026 -1.0304 2.9226 13 1 3.4663 -1.9606 3.2863 14 6 3.9973 0.1495 3.9390 15 7 5.0380 1.0465 3.3923 16 6 5.5010 2.1836 3.9482 17 8 6.3670 2.8229 3.3894 18 6 4.9429 2.6605 5.2643 19 16 5.7618 4.2018 5.7440 20 6 4.9416 4.5219 7.2701 21 1 4.1834 3.8416 7.6289 22 6 5.2690 5.6491 8.0109 23 7 6.1927 6.4786 7.5735 24 14 4.3999 5.9882 9.6293 25 1 4.6401 4.8611 10.5659 26 1 4.9275 7.2439 10.2209 27 1 2.9414 6.1289 9.3879 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8322 1.5853 1.2229 32 1 4.4951 0.3180 0.1470 33 1 5.5349 -1.7292 1.5795 34 1 6.0778 -1.3678 3.2646 35 1 4.2936 -0.2196 4.9209 36 1 3.0427 0.6719 4.0025 37 1 3.8716 2.8342 5.1630 38 1 5.1176 1.9035 6.0287 39 1 6.4218 7.2662 8.0914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297276737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:08 Heat of formation + Delta-G solvation = -123.830532 kcal Electronic energy + Delta-G solvation = -26961.096034 eV Core-core repulsion = 22667.388763 eV Total energy + Delta-G solvation = -4293.707271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.60122 -47.59312 -41.39412 -39.34475 -38.00509 -34.06886 -32.45928 -32.02063 -31.17764 -30.29663 -28.66013 -26.29682 -25.53285 -25.15402 -22.41761 -21.66987 -20.43406 -19.38305 -18.34100 -18.18920 -17.60086 -17.33571 -16.76900 -16.48013 -15.93766 -15.56306 -15.02284 -14.83077 -14.48189 -14.40175 -14.10076 -13.91890 -13.85301 -13.67577 -13.40844 -13.25666 -13.04529 -12.99039 -12.77213 -12.59906 -12.40360 -12.20554 -12.15525 -11.92004 -11.78141 -11.60055 -11.07484 -11.05996 -10.79530 -10.42771 -9.86265 -9.59927 -9.21636 -9.08777 -8.68391 -8.29061 -6.54487 -6.24573 -3.95901 1.69633 1.95119 2.66871 2.92043 3.10833 3.21602 3.21771 3.26955 3.44005 3.50370 3.80941 3.98839 4.06442 4.12028 4.15374 4.17511 4.46398 4.77810 4.92695 4.98497 5.04224 5.07738 5.10610 5.12973 5.25196 5.34945 5.38991 5.42407 5.45166 5.53571 5.57290 5.62716 5.83818 6.06637 6.12064 6.75199 7.26124 7.51120 7.56534 8.31921 8.41539 9.20664 10.82781 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.002800 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.038225 B = 9997.458976 C =10430.919688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.284 3.716 3 F -0.184 7.184 4 F -0.183 7.183 5 C 0.505 3.495 6 O -0.507 6.507 7 N -0.608 5.608 8 C 0.084 3.916 9 C 0.125 3.875 10 H 0.142 0.858 11 C -0.146 4.146 12 C 0.123 3.877 13 H 0.142 0.858 14 C 0.094 3.906 15 N -0.630 5.630 16 C 0.554 3.446 17 O -0.511 6.511 18 C -0.148 4.148 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 -17.940 -14.921 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.245 3.755 3 F -0.165 7.165 4 F -0.164 7.164 5 C 0.289 3.711 6 O -0.381 6.381 7 N -0.343 5.343 8 C -0.038 4.038 9 C 0.021 3.979 10 H 0.159 0.841 11 C -0.185 4.185 12 C 0.021 3.979 13 H 0.160 0.840 14 C -0.030 4.030 15 N -0.369 5.369 16 C 0.344 3.656 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.093 -17.135 -15.424 24.121 hybrid contribution -1.537 -0.340 1.531 2.196 sum -8.630 -17.475 -13.894 23.935 Atomic orbital electron populations 1.22648 0.88627 1.06748 1.05953 1.21317 0.95814 0.75791 0.82616 1.93086 1.90327 1.36558 1.96566 1.93084 1.90558 1.80811 1.51915 1.20401 0.81219 0.83793 0.85719 1.90783 1.55065 1.32967 1.59333 1.49845 1.14911 1.40237 1.29268 1.23660 0.88907 0.93346 0.97923 1.23867 0.97245 0.92110 0.84681 0.84091 1.24216 0.95217 0.95939 1.03108 1.24073 0.92439 0.96659 0.84761 0.84039 1.22808 0.92359 0.90605 0.97221 1.49357 1.40707 1.24195 1.22630 1.20053 0.81338 0.78150 0.86109 1.90722 1.30448 1.54100 1.63195 1.23518 1.04542 1.06015 0.95723 1.85386 1.51508 1.19790 1.26507 1.22811 1.26068 1.12536 1.07084 0.90980 1.24988 0.95137 0.94952 0.98417 1.70006 1.29269 1.12622 1.38359 0.86222 0.79585 0.77817 0.81876 1.19912 1.20775 1.19915 0.88671 0.88972 0.88064 0.88573 0.89585 0.88750 0.88062 0.89588 0.90506 0.89356 0.89235 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.92 37.16 0.33 -0.98 16 2 C 0.28 2.70 2.25 -27.88 -0.06 2.64 16 3 F -0.18 -1.92 14.43 2.25 0.03 -1.89 16 4 F -0.18 -1.81 17.05 2.25 0.04 -1.78 16 5 C 0.51 5.47 7.33 -10.98 -0.08 5.39 16 6 O -0.51 -6.46 16.44 5.56 0.09 -6.37 16 7 N -0.61 -5.97 2.99 -155.09 -0.46 -6.44 16 8 C 0.08 0.80 5.22 -0.50 0.00 0.80 16 9 C 0.12 1.24 5.18 -62.54 -0.32 0.92 16 10 H 0.14 1.40 8.06 -51.93 -0.42 0.98 16 11 C -0.15 -1.05 6.82 -22.32 -0.15 -1.20 16 12 C 0.12 1.03 5.24 -62.56 -0.33 0.70 16 13 H 0.14 1.02 8.06 -51.93 -0.42 0.60 16 14 C 0.09 0.96 6.01 -1.67 -0.01 0.95 16 15 N -0.63 -8.21 2.94 -156.76 -0.46 -8.67 16 16 C 0.55 10.06 7.91 -10.99 -0.09 9.97 16 17 O -0.51 -11.15 16.21 5.55 0.09 -11.06 16 18 C -0.15 -2.94 5.44 36.01 0.20 -2.74 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 24 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.10 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.10 1.10 7.09 -51.93 -0.37 0.73 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -34.95 350.51 -7.18 -42.13 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.96 Total: -2.05 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.32 Total: 3.61 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.19 Total: -40.31 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.95 -7.18 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297276737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.702 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds