Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47338 * 270.00620 * 3 2 1 5 5 H 1.48507 * 109.47086 * 30.00460 * 3 2 1 6 6 H 1.48497 * 109.47049 * 150.00300 * 3 2 1 7 7 C 1.38798 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00094 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47413 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99725 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64722 * 0.02562 * 13 11 10 15 15 C 1.54919 * 104.82936 * 155.83482 * 14 13 11 16 16 C 1.55154 * 101.57841 * 37.01341 * 15 14 13 17 17 H 1.09002 * 110.72284 * 83.04123 * 16 15 14 18 18 N 1.46511 * 110.71606 * 206.13317 * 16 15 14 19 19 C 1.34770 * 119.99717 * 204.99946 * 18 16 15 20 20 O 1.21288 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99999 * 179.97438 * 19 18 16 22 22 H 1.09002 * 115.54929 * 34.41763 * 21 19 18 23 23 C 1.53005 * 117.49884 * 180.08744 * 21 19 18 24 24 C 1.52999 * 117.51845 * 248.71846 * 21 19 18 25 25 F 1.39906 * 117.49960 * 0.02562 * 24 21 19 26 26 F 1.39901 * 117.50180 * 145.02942 * 24 21 19 27 27 C 1.47024 * 125.64747 * 179.97438 * 13 11 10 28 28 H 0.96997 * 119.99647 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47754 * 60.00403 * 10 9 7 30 30 H 1.09001 * 109.47453 * 300.00214 * 10 9 7 31 31 H 1.08998 * 110.36632 * 37.00062 * 14 13 11 32 32 H 1.08995 * 110.46373 * 274.72091 * 14 13 11 33 33 H 1.08994 * 111.00560 * 278.93780 * 15 14 13 34 34 H 1.08999 * 110.99781 * 155.08365 * 15 14 13 35 35 H 0.96997 * 119.99554 * 24.99958 * 18 16 15 36 36 H 1.09004 * 117.49360 * 215.00203 * 23 21 19 37 37 H 1.08995 * 117.49694 * 359.97438 * 23 21 19 38 38 H 1.08999 * 109.88029 * 61.68303 * 27 13 11 39 39 H 1.08996 * 109.88311 * 300.51638 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0021 13 7 2.8439 -6.3432 -0.0008 14 6 4.3149 -6.2450 0.0008 15 6 4.8009 -7.5821 0.6138 16 6 3.7725 -8.5853 0.0278 17 1 4.0616 -8.8907 -0.9779 18 7 3.6316 -9.7529 0.9016 19 6 3.2178 -10.9299 0.3920 20 8 2.9625 -11.0227 -0.7901 21 6 3.0734 -12.1310 1.2906 22 1 2.7434 -11.9201 2.3078 23 6 2.6016 -13.4387 0.6516 24 6 4.0586 -13.2846 1.0924 25 9 5.0254 -13.1437 0.0910 26 9 4.4670 -13.9882 2.2306 27 6 2.4663 -7.7641 -0.0008 28 1 -0.4849 0.8400 0.0004 29 1 3.1243 -3.7315 0.8894 30 1 3.1244 -3.7314 -0.8905 31 1 4.6383 -5.4057 0.6165 32 1 4.6905 -6.1352 -1.0164 33 1 4.7450 -7.5563 1.7020 34 1 5.8115 -7.8197 0.2815 35 1 3.8362 -9.6786 1.8468 36 1 1.9611 -14.0881 1.2486 37 1 2.3952 -13.4301 -0.4186 38 1 1.9015 -7.9975 -0.9033 39 1 1.8677 -7.9886 0.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524169607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -130.048677 kcal Electronic energy + Delta-G solvation = -25396.183411 eV Core-core repulsion = 21102.206501 eV Total energy + Delta-G solvation = -4293.976910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.095 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.25823 -47.92743 -40.68501 -39.56219 -37.49941 -36.07105 -34.60695 -32.44892 -31.16073 -29.78176 -28.18428 -25.58346 -25.20869 -23.41389 -23.12916 -21.44749 -20.91352 -19.42719 -18.85082 -17.94226 -17.64659 -17.23886 -16.78754 -16.52268 -16.45025 -15.59996 -15.25194 -14.82500 -14.80381 -14.57167 -14.48392 -14.23605 -14.12448 -14.04195 -13.91382 -13.59424 -12.95277 -12.90130 -12.60491 -12.56141 -12.26875 -12.04172 -11.84328 -11.81372 -11.22141 -11.07869 -11.04196 -10.88005 -10.78448 -10.42263 -9.85038 -9.70943 -9.41791 -9.08527 -8.59387 -8.25879 -6.52816 -6.23501 -3.94545 1.56694 2.27712 2.46955 2.77193 2.91116 3.01638 3.20968 3.24399 3.28822 3.54740 3.56978 3.77804 3.95942 4.04156 4.17983 4.24657 4.29029 4.63271 4.81016 4.87176 4.94428 5.01765 5.02531 5.11628 5.19587 5.36830 5.40273 5.51525 5.57735 5.63208 5.73874 5.87452 5.97457 6.09478 6.32498 6.88272 7.56652 7.58499 7.60782 8.33177 8.50018 9.21656 10.83929 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.038585 B = 0.001877 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.488236 B =14913.364097 C =15262.304563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.513 6.513 13 N -0.626 5.626 14 C 0.102 3.898 15 C -0.139 4.139 16 C 0.133 3.867 17 H 0.111 0.889 18 N -0.711 5.711 19 C 0.545 3.455 20 O -0.518 6.518 21 C -0.195 4.195 22 H 0.152 0.848 23 C -0.139 4.139 24 C 0.223 3.777 25 F -0.150 7.150 26 F -0.154 7.154 27 C 0.100 3.900 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -26.314 4.720 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.021 4.021 15 C -0.177 4.177 16 C 0.028 3.972 17 H 0.129 0.871 18 N -0.363 5.363 19 C 0.330 3.670 20 O -0.393 6.393 21 C -0.218 4.218 22 H 0.170 0.830 23 C -0.177 4.177 24 C 0.185 3.815 25 F -0.130 7.130 26 F -0.134 7.134 27 C -0.025 4.025 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.092 0.908 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.982 -26.499 3.855 28.578 hybrid contribution 2.310 1.294 0.650 2.726 sum 12.292 -25.206 4.504 28.403 Atomic orbital electron populations 1.70020 1.05956 1.27484 1.46772 1.25001 0.95044 0.99054 0.94528 0.86157 0.79380 0.81523 0.78369 1.20248 1.20748 1.19696 1.22850 0.94885 0.91562 1.59041 0.90904 1.85432 1.04890 0.96361 1.96716 1.23507 1.06536 0.94794 1.04842 1.20076 0.85667 0.85401 0.75159 1.90722 1.14960 1.85083 1.47877 1.48445 1.06602 1.05303 1.76117 1.22274 0.80523 0.97834 1.01508 1.23102 0.99105 0.93935 1.01576 1.22068 0.94925 0.84388 0.95815 0.87129 1.45797 1.68312 1.09305 1.12844 1.19202 0.76913 0.83165 0.87731 1.90774 1.48423 1.84248 1.15845 1.23750 1.03319 0.90924 1.03764 0.83016 1.24329 0.92178 0.95520 1.05660 1.19658 0.84557 0.98184 0.79093 1.93095 1.65283 1.95794 1.58875 1.93074 1.92029 1.79057 1.49257 1.22212 0.96404 0.80853 1.03025 0.92158 0.89246 0.89182 0.89610 0.90771 0.89739 0.88891 0.75897 0.84766 0.84430 0.90794 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -2.94 5.16 36.01 0.19 -2.76 16 11 C 0.55 10.50 7.87 -10.98 -0.09 10.41 16 12 O -0.51 -11.98 16.19 5.55 0.09 -11.89 16 13 N -0.63 -8.73 3.33 -170.52 -0.57 -9.30 16 14 C 0.10 0.97 6.69 -2.53 -0.02 0.95 16 15 C -0.14 -0.90 6.71 -24.58 -0.16 -1.06 16 16 C 0.13 1.13 3.32 -66.09 -0.22 0.91 16 17 H 0.11 1.05 7.55 -51.93 -0.39 0.66 16 18 N -0.71 -4.89 5.10 -52.03 -0.27 -5.15 16 19 C 0.55 4.69 7.25 -10.99 -0.08 4.61 16 20 O -0.52 -6.45 15.90 5.55 0.09 -6.36 16 21 C -0.20 -1.08 6.17 -91.77 -0.57 -1.65 16 22 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 23 C -0.14 -0.69 10.01 -26.73 -0.27 -0.96 16 24 C 0.22 1.51 5.20 -26.73 -0.14 1.37 16 25 F -0.15 -1.41 17.13 2.25 0.04 -1.37 16 26 F -0.15 -1.10 17.60 2.25 0.04 -1.06 16 27 C 0.10 1.21 6.62 -3.06 -0.02 1.19 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.64 7.84 -51.92 -0.41 1.23 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.09 0.78 7.47 -51.93 -0.39 0.39 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 1.65 8.56 -40.82 -0.35 1.30 16 36 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.14 0.81 7.67 -51.93 -0.40 0.41 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -37.25 360.02 -7.68 -44.93 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.85 Total: -2.42 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.18 Total: 0.16 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: -0.10 Total: -39.78 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.25 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.25 -7.68 -44.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524169607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.120 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds