Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47338 * 270.00620 * 3 2 1 5 5 H 1.48507 * 109.47086 * 30.00460 * 3 2 1 6 6 H 1.48497 * 109.47049 * 150.00300 * 3 2 1 7 7 C 1.38798 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00156 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00094 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47413 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99725 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64722 * 0.02562 * 13 11 10 15 15 C 1.54919 * 104.82936 * 155.83482 * 14 13 11 16 16 C 1.55154 * 101.57841 * 37.01341 * 15 14 13 17 17 H 1.09002 * 110.72284 * 83.04123 * 16 15 14 18 18 N 1.46511 * 110.71606 * 206.13317 * 16 15 14 19 19 C 1.34770 * 119.99717 * 204.99946 * 18 16 15 20 20 O 1.21288 * 120.00091 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99999 * 179.97438 * 19 18 16 22 22 H 1.09002 * 115.54929 * 34.41763 * 21 19 18 23 23 C 1.53005 * 117.49884 * 180.08744 * 21 19 18 24 24 C 1.52999 * 117.51845 * 248.71846 * 21 19 18 25 25 F 1.39906 * 117.49960 * 0.02562 * 24 21 19 26 26 F 1.39901 * 117.50180 * 145.02942 * 24 21 19 27 27 C 1.47024 * 125.64747 * 179.97438 * 13 11 10 28 28 H 0.96997 * 119.99647 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47754 * 60.00403 * 10 9 7 30 30 H 1.09001 * 109.47453 * 300.00214 * 10 9 7 31 31 H 1.08998 * 110.36632 * 37.00062 * 14 13 11 32 32 H 1.08995 * 110.46373 * 274.72091 * 14 13 11 33 33 H 1.08994 * 111.00560 * 278.93780 * 15 14 13 34 34 H 1.08999 * 110.99781 * 155.08365 * 15 14 13 35 35 H 0.96997 * 119.99554 * 24.99958 * 18 16 15 36 36 H 1.09004 * 117.49360 * 215.00203 * 23 21 19 37 37 H 1.08995 * 117.49694 * 359.97438 * 23 21 19 38 38 H 1.08999 * 109.88029 * 61.68303 * 27 13 11 39 39 H 1.08996 * 109.88311 * 300.51638 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0021 13 7 2.8439 -6.3432 -0.0008 14 6 4.3149 -6.2450 0.0008 15 6 4.8009 -7.5821 0.6138 16 6 3.7725 -8.5853 0.0278 17 1 4.0616 -8.8907 -0.9779 18 7 3.6316 -9.7529 0.9016 19 6 3.2178 -10.9299 0.3920 20 8 2.9625 -11.0227 -0.7901 21 6 3.0734 -12.1310 1.2906 22 1 2.7434 -11.9201 2.3078 23 6 2.6016 -13.4387 0.6516 24 6 4.0586 -13.2846 1.0924 25 9 5.0254 -13.1437 0.0910 26 9 4.4670 -13.9882 2.2306 27 6 2.4663 -7.7641 -0.0008 28 1 -0.4849 0.8400 0.0004 29 1 3.1243 -3.7315 0.8894 30 1 3.1244 -3.7314 -0.8905 31 1 4.6383 -5.4057 0.6165 32 1 4.6905 -6.1352 -1.0164 33 1 4.7450 -7.5563 1.7020 34 1 5.8115 -7.8197 0.2815 35 1 3.8362 -9.6786 1.8468 36 1 1.9611 -14.0881 1.2486 37 1 2.3952 -13.4301 -0.4186 38 1 1.9015 -7.9975 -0.9033 39 1 1.8677 -7.9886 0.8821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524169607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -157.024645 kcal Electronic energy + Delta-G solvation = -25397.353177 eV Core-core repulsion = 21102.206501 eV Total energy + Delta-G solvation = -4295.146676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.80560 -48.49050 -41.51496 -40.65848 -38.63065 -36.63340 -35.48866 -34.58826 -32.29096 -30.91007 -29.28007 -27.67231 -25.99322 -24.30659 -23.60377 -22.19019 -21.56341 -20.73563 -19.68698 -19.36255 -18.42088 -18.19248 -17.86076 -17.32453 -17.07478 -16.88636 -16.69545 -16.49870 -15.76562 -15.64985 -15.40476 -15.14446 -14.99344 -14.72700 -14.64373 -14.54846 -14.46625 -14.01635 -13.71477 -13.36440 -13.32374 -13.16615 -12.95210 -12.88985 -12.76396 -12.61814 -12.31467 -11.91398 -11.73116 -11.45056 -11.14478 -11.09226 -11.01981 -10.35170 -10.28607 -9.78712 -8.69035 -8.34854 -6.13857 0.95659 1.20791 1.42737 1.43163 1.51546 1.55266 1.73580 1.98816 2.13959 2.24959 2.27109 2.99428 3.11357 3.19928 3.26562 3.41403 3.45439 3.48923 3.79696 3.87392 3.98756 4.12605 4.22614 4.29570 4.43548 4.44132 4.60247 4.61532 4.70452 4.72972 4.79252 4.92641 5.01583 5.24628 5.32592 5.41707 6.19633 6.29297 6.33247 7.00435 7.05852 7.06488 8.74444 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.038585 B = 0.001877 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.488236 B =14913.364097 C =15262.304563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.118 4.118 11 C 0.545 3.455 12 O -0.569 6.569 13 N -0.615 5.615 14 C 0.088 3.912 15 C -0.120 4.120 16 C 0.143 3.857 17 H 0.102 0.898 18 N -0.698 5.698 19 C 0.539 3.461 20 O -0.563 6.563 21 C -0.185 4.185 22 H 0.187 0.813 23 C -0.129 4.129 24 C 0.208 3.792 25 F -0.171 7.171 26 F -0.156 7.156 27 C 0.097 3.903 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.423 0.577 36 H 0.166 0.834 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.054 -26.758 6.069 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.269 4.269 11 C 0.333 3.667 12 O -0.447 6.447 13 N -0.351 5.351 14 C -0.033 4.033 15 C -0.158 4.158 16 C 0.037 3.963 17 H 0.120 0.880 18 N -0.350 5.350 19 C 0.325 3.675 20 O -0.441 6.441 21 C -0.207 4.207 22 H 0.205 0.795 23 C -0.167 4.167 24 C 0.171 3.829 25 F -0.151 7.151 26 F -0.136 7.136 27 C -0.027 4.027 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.261 0.739 36 H 0.184 0.816 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.974 -26.983 5.240 30.395 hybrid contribution 1.447 1.286 0.211 1.948 sum 14.421 -25.697 5.451 29.967 Atomic orbital electron populations 1.70192 1.08035 1.28620 1.47998 1.26164 0.95988 1.03420 0.93741 0.84927 0.78248 0.75864 0.78774 1.19392 1.20387 1.17932 1.23187 0.95380 0.91709 1.58863 0.89669 1.85655 1.10670 0.99441 1.97055 1.23293 1.03399 0.93451 1.06722 1.19886 0.85398 0.86081 0.75287 1.90698 1.17321 1.85803 1.50908 1.48347 1.08366 1.04913 1.73461 1.22717 0.77279 1.00232 1.03105 1.23106 0.99517 0.90741 1.02441 1.21868 0.93315 0.84817 0.96295 0.87980 1.45696 1.67360 1.08348 1.13592 1.19759 0.75959 0.84238 0.87550 1.90761 1.50345 1.85064 1.17930 1.23837 1.02563 0.89489 1.04781 0.79541 1.24476 0.91146 0.95515 1.05560 1.19878 0.84749 0.99393 0.78907 1.93048 1.66242 1.95984 1.59851 1.93067 1.92117 1.79164 1.49255 1.22322 0.98452 0.80329 1.01601 0.92009 0.86911 0.87365 0.88421 0.89422 0.87897 0.85889 0.73867 0.81634 0.85708 0.93331 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.54 -30.78 9.50 67.95 0.65 -30.13 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 10 C -0.12 -4.67 5.16 71.24 0.37 -4.30 16 11 C 0.55 20.98 7.87 87.66 0.69 21.67 16 12 O -0.57 -27.70 16.19 -3.05 -0.05 -27.75 16 13 N -0.62 -16.49 3.33 -811.78 -2.70 -19.19 16 14 C 0.09 1.40 6.69 86.86 0.58 1.98 16 15 C -0.12 -1.08 6.71 31.99 0.21 -0.86 16 16 C 0.14 2.14 3.32 46.18 0.15 2.30 16 17 H 0.10 1.80 7.55 -2.39 -0.02 1.78 16 18 N -0.70 -8.01 5.10 -436.90 -2.23 -10.24 16 19 C 0.54 8.55 7.25 87.66 0.64 9.18 16 20 O -0.56 -14.01 15.90 -3.06 -0.05 -14.06 16 21 C -0.19 -1.64 6.17 -11.54 -0.07 -1.71 16 22 H 0.19 0.28 8.14 -2.39 -0.02 0.26 16 23 C -0.13 -1.05 10.01 30.60 0.31 -0.75 16 24 C 0.21 2.50 5.20 30.60 0.16 2.66 16 25 F -0.17 -3.13 17.13 44.97 0.77 -2.36 16 26 F -0.16 -1.93 17.60 44.97 0.79 -1.14 16 27 C 0.10 2.33 6.62 86.73 0.57 2.90 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.11 3.93 7.84 -2.40 -0.02 3.91 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 31 H 0.10 1.38 7.47 -2.39 -0.02 1.36 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 0.63 8.01 -2.39 -0.02 0.61 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.42 1.99 8.56 -92.71 -0.79 1.20 16 36 H 0.17 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.12 1.41 7.67 -2.39 -0.02 1.39 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -86.40 360.02 2.71 -83.68 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.31 Total: 7.40 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.72 Total: 4.05 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -4.64 Total: -85.18 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.81 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.56 Total: -3.50 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -86.40 2.71 -83.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524169607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.340 kcal (2) G-P(sol) polarization free energy of solvation -86.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds