Wall clock time and date at job start Tue Mar 31 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 C 1.34781 * 134.48697 * 204.64135 * 12 11 9 14 14 O 1.21600 * 119.99532 * 179.97438 * 13 12 11 15 15 N 1.34768 * 120.00294 * 359.97438 * 13 12 11 16 16 C 1.40846 * 120.00122 * 179.97438 * 15 13 12 17 17 C 1.40238 * 126.07294 * 359.69015 * 16 15 13 18 18 N 1.30842 * 108.33983 * 179.85471 * 17 16 15 19 19 N 1.40072 * 108.36438 * 0.40383 * 18 17 16 20 20 C 1.46495 * 126.05635 * 179.72170 * 19 18 17 21 21 C 1.53004 * 109.47352 * 305.01974 * 20 19 18 22 22 F 1.39900 * 109.46583 * 60.00440 * 21 20 19 23 23 F 1.39896 * 109.46967 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47386 * 300.00560 * 21 20 19 25 25 C 1.35728 * 126.07578 * 179.97438 * 16 15 13 26 26 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 29 29 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 30 30 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 31 31 H 0.97000 * 120.00219 * 359.97438 * 15 13 12 32 32 H 1.07995 * 125.82854 * 359.97438 * 17 16 15 33 33 H 1.08998 * 109.47819 * 65.02633 * 20 19 18 34 34 H 1.09002 * 109.46850 * 185.02378 * 20 19 18 35 35 H 1.07994 * 126.22280 * 0.02562 * 25 16 15 36 36 H 1.08992 * 113.77450 * 221.06110 * 26 12 11 37 37 H 1.09008 * 113.76786 * 89.66105 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 6 6.3443 -2.4028 -1.3591 14 8 6.9089 -3.3394 -0.8275 15 7 6.9703 -1.6965 -2.3212 16 6 8.2788 -2.0429 -2.7105 17 6 9.0482 -3.0890 -2.1811 18 7 10.2040 -3.1010 -2.7942 19 7 10.2182 -2.0586 -3.7297 20 6 11.3275 -1.7174 -4.6237 21 6 12.5960 -1.4904 -3.7990 22 9 12.9081 -2.6571 -3.0929 23 9 13.6551 -1.1640 -4.6527 24 9 12.3845 -0.4420 -2.8971 25 6 9.0211 -1.4202 -3.6610 26 6 4.1314 -2.6033 -0.0006 27 1 -0.4850 0.8401 0.0004 28 1 3.7023 0.5737 0.9692 29 1 3.4725 -1.3369 -2.2110 30 1 4.5871 -0.0532 -1.5660 31 1 6.5197 -0.9496 -2.7455 32 1 8.7388 -3.7697 -1.4019 33 1 11.4923 -2.5342 -5.3265 34 1 11.0843 -0.8084 -5.1739 35 1 8.7159 -0.5708 -4.2541 36 1 4.5862 -2.8836 0.9494 37 1 3.4719 -3.3731 -0.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771667800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:44 Heat of formation + Delta-G solvation = -81.671038 kcal Electronic energy + Delta-G solvation = -28439.145182 eV Core-core repulsion = 23613.345659 eV Total energy + Delta-G solvation = -4825.799523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.46513 -48.03704 -47.87542 -41.47869 -39.94547 -38.10639 -34.93545 -34.53666 -33.61606 -32.60352 -30.14985 -29.23823 -27.67449 -25.69856 -25.27725 -24.10272 -21.91415 -21.43711 -20.37680 -19.33873 -18.91862 -18.84178 -18.14382 -17.79534 -17.30556 -17.00343 -16.41483 -15.94955 -15.52573 -15.09073 -14.99343 -14.75994 -14.69629 -14.36862 -14.20454 -14.06843 -14.03008 -13.82383 -13.61360 -13.43281 -13.22963 -12.96544 -12.83516 -12.56795 -12.41168 -12.25314 -11.30083 -11.05735 -10.96126 -10.78371 -10.65807 -10.19736 -9.99620 -9.65804 -9.42736 -9.10454 -8.79494 -8.26880 -7.68254 -6.47855 -4.54232 1.42451 1.80027 2.30448 2.65157 2.75423 2.93128 2.95412 3.09449 3.25989 3.46635 3.63216 3.75602 3.96692 4.08903 4.28104 4.45381 4.54576 4.61977 4.93590 5.02623 5.33391 5.38135 5.52350 5.94189 5.96721 6.05069 6.17127 6.25389 6.31208 6.53088 6.54968 6.87075 7.12079 7.29563 7.52768 7.96563 8.32892 8.44893 8.56590 8.81506 9.09360 10.64290 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.026204 B = 0.002417 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.271286 B =11580.070683 C =12107.208423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.080 3.920 3 Si 0.861 3.139 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.093 0.907 9 C 0.197 3.803 10 O -0.551 6.551 11 C 0.061 3.939 12 N -0.650 5.650 13 C 0.729 3.271 14 O -0.591 6.591 15 N -0.662 5.662 16 C 0.051 3.949 17 C 0.067 3.933 18 N -0.274 5.274 19 N -0.394 5.394 20 C 0.109 3.891 21 C 0.442 3.558 22 F -0.164 7.164 23 F -0.180 7.180 24 F -0.178 7.178 25 C 0.005 3.995 26 C 0.150 3.850 27 H 0.271 0.729 28 H 0.351 0.649 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.406 0.594 32 H 0.214 0.786 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.179 0.821 36 H 0.078 0.922 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.115 1.203 -12.629 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.126 4.126 3 Si 0.690 3.310 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.110 0.890 9 C 0.155 3.845 10 O -0.362 6.362 11 C -0.062 4.062 12 N -0.387 5.387 13 C 0.432 3.568 14 O -0.470 6.470 15 N -0.309 5.309 16 C -0.054 4.054 17 C -0.122 4.122 18 N -0.094 5.094 19 N -0.181 5.181 20 C -0.016 4.016 21 C 0.387 3.613 22 F -0.145 7.145 23 F -0.161 7.161 24 F -0.159 7.159 25 C -0.139 4.139 26 C 0.028 3.972 27 H 0.082 0.918 28 H 0.203 0.797 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.230 0.770 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.096 0.904 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.027 -0.470 -12.274 24.351 hybrid contribution -0.811 2.476 -0.373 2.632 sum 20.216 2.006 -12.647 23.930 Atomic orbital electron populations 1.69855 1.06066 1.27658 1.47444 1.25018 0.94923 0.99011 0.93630 0.87313 0.80133 0.84371 0.79226 1.19278 1.18400 1.21045 1.21221 0.87573 0.95752 1.52864 0.88954 1.20527 0.92544 0.87687 0.83702 1.86493 1.67486 1.24221 1.58048 1.24635 0.88753 0.90118 1.02684 1.49214 1.11095 1.36037 1.42314 1.15290 0.80674 0.81512 0.79297 1.90743 1.65903 1.31629 1.58754 1.41886 1.13010 1.35566 1.40420 1.17513 0.87263 1.00180 1.00473 1.24757 0.89199 0.98339 0.99943 1.77554 1.21357 1.06531 1.03979 1.47659 1.11374 1.26336 1.32758 1.22600 0.81994 1.06567 0.90440 1.20705 0.86041 0.74917 0.79655 1.93288 1.93707 1.47778 1.79723 1.93213 1.59813 1.92754 1.70337 1.93233 1.94802 1.58405 1.69486 1.21704 0.87023 1.01830 1.03385 1.23231 0.86126 0.97027 0.90859 0.91846 0.79677 0.88706 0.91637 0.75930 0.77017 0.85472 0.84415 0.80349 0.90395 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 13.96 55.43 0.77 -22.91 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.86 18.03 24.34 -169.99 -4.14 13.89 16 4 H -0.27 -5.52 7.06 56.52 0.40 -5.12 16 5 H -0.26 -4.96 5.28 56.52 0.30 -4.66 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.18 9.20 -34.44 -0.32 -13.50 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.20 4.22 1.06 -90.84 -0.10 4.12 16 10 O -0.55 -12.43 13.32 -35.23 -0.47 -12.90 16 11 C 0.06 1.11 7.03 -2.97 -0.02 1.09 16 12 N -0.65 -12.12 3.61 -184.06 -0.66 -12.78 16 13 C 0.73 13.38 8.73 -86.92 -0.76 12.62 16 14 O -0.59 -12.22 14.23 5.28 0.08 -12.14 16 15 N -0.66 -9.59 5.48 -14.39 -0.08 -9.67 16 16 C 0.05 0.71 6.90 -83.86 -0.58 0.13 16 17 C 0.07 1.02 10.84 -17.22 -0.19 0.84 16 18 N -0.27 -3.87 11.50 30.70 0.35 -3.52 16 19 N -0.39 -4.14 3.63 -61.03 -0.22 -4.36 16 20 C 0.11 0.67 6.51 -4.04 -0.03 0.64 16 21 C 0.44 3.82 3.28 37.16 0.12 3.94 16 22 F -0.16 -1.87 16.28 2.25 0.04 -1.83 16 23 F -0.18 -1.39 17.32 2.25 0.04 -1.35 16 24 F -0.18 -1.90 17.24 2.25 0.04 -1.86 16 25 C 0.01 0.05 11.52 -16.67 -0.19 -0.14 16 26 C 0.15 2.94 8.23 -2.97 -0.02 2.91 16 27 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.35 7.54 3.31 45.56 0.15 7.69 16 29 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 30 H 0.07 1.11 6.98 -51.93 -0.36 0.75 16 31 H 0.41 4.83 8.44 -40.82 -0.34 4.48 16 32 H 0.21 3.56 5.91 -52.49 -0.31 3.25 16 33 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 0.31 8.07 -51.93 -0.42 -0.11 16 35 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.72 8.09 -51.92 -0.42 1.30 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -31.78 328.72 -4.54 -36.32 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -3.06 Total: 13.59 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -2.18 Total: 14.56 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.16 Total: -53.23 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.39 Total: -25.04 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.11 Total: -5.04 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -4.14 Total: 13.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.78 -4.54 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771667800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.352 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds