Wall clock time and date at job start Tue Mar 31 2020 17:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 C 1.34781 * 134.48697 * 204.64135 * 12 11 9 14 14 O 1.21600 * 119.99532 * 179.97438 * 13 12 11 15 15 N 1.34768 * 120.00294 * 359.97438 * 13 12 11 16 16 C 1.40846 * 120.00122 * 179.97438 * 15 13 12 17 17 C 1.40238 * 126.07294 * 359.69015 * 16 15 13 18 18 N 1.30842 * 108.33983 * 179.85471 * 17 16 15 19 19 N 1.40072 * 108.36438 * 0.40383 * 18 17 16 20 20 C 1.46495 * 126.05635 * 179.72170 * 19 18 17 21 21 C 1.53004 * 109.47352 * 305.01974 * 20 19 18 22 22 F 1.39900 * 109.46583 * 60.00440 * 21 20 19 23 23 F 1.39896 * 109.46967 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.47386 * 300.00560 * 21 20 19 25 25 C 1.35728 * 126.07578 * 179.97438 * 16 15 13 26 26 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 29 29 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 30 30 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 31 31 H 0.97000 * 120.00219 * 359.97438 * 15 13 12 32 32 H 1.07995 * 125.82854 * 359.97438 * 17 16 15 33 33 H 1.08998 * 109.47819 * 65.02633 * 20 19 18 34 34 H 1.09002 * 109.46850 * 185.02378 * 20 19 18 35 35 H 1.07994 * 126.22280 * 0.02562 * 25 16 15 36 36 H 1.08992 * 113.77450 * 221.06110 * 26 12 11 37 37 H 1.09008 * 113.76786 * 89.66105 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 6 6.3443 -2.4028 -1.3591 14 8 6.9089 -3.3394 -0.8275 15 7 6.9703 -1.6965 -2.3212 16 6 8.2788 -2.0429 -2.7105 17 6 9.0482 -3.0890 -2.1811 18 7 10.2040 -3.1010 -2.7942 19 7 10.2182 -2.0586 -3.7297 20 6 11.3275 -1.7174 -4.6237 21 6 12.5960 -1.4904 -3.7990 22 9 12.9081 -2.6571 -3.0929 23 9 13.6551 -1.1640 -4.6527 24 9 12.3845 -0.4420 -2.8971 25 6 9.0211 -1.4202 -3.6610 26 6 4.1314 -2.6033 -0.0006 27 1 -0.4850 0.8401 0.0004 28 1 3.7023 0.5737 0.9692 29 1 3.4725 -1.3369 -2.2110 30 1 4.5871 -0.0532 -1.5660 31 1 6.5197 -0.9496 -2.7455 32 1 8.7388 -3.7697 -1.4019 33 1 11.4923 -2.5342 -5.3265 34 1 11.0843 -0.8084 -5.1739 35 1 8.7159 -0.5708 -4.2541 36 1 4.5862 -2.8836 0.9494 37 1 3.4719 -3.3731 -0.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771667800.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:44 Heat of formation + Delta-G solvation = -107.046895 kcal Electronic energy + Delta-G solvation = -28440.245562 eV Core-core repulsion = 23613.345659 eV Total energy + Delta-G solvation = -4826.899903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.15622 -48.70577 -48.63414 -42.44877 -41.36749 -39.56401 -36.26689 -35.94887 -34.53341 -34.48127 -31.21064 -30.46572 -28.83410 -27.19585 -26.92643 -24.83792 -23.07763 -22.36526 -21.72265 -20.64821 -19.67109 -19.59570 -19.43775 -18.99758 -18.73312 -18.16426 -17.81444 -17.03427 -16.79791 -16.20501 -16.06275 -15.58119 -15.50275 -15.38089 -15.30428 -15.11727 -15.06643 -14.90042 -14.80854 -14.76716 -14.46852 -14.17841 -13.96813 -13.82053 -13.75558 -13.19678 -12.89997 -12.67058 -12.39406 -11.92394 -11.89017 -11.87784 -11.53560 -11.10297 -10.91048 -10.55716 -10.50504 -9.72719 -8.73045 -8.38955 -6.51341 0.58664 1.02815 1.27953 1.31371 1.44253 1.50243 1.54504 1.67891 2.21182 2.33372 2.64549 2.77347 2.87948 2.93544 3.12358 3.33041 3.69590 3.83630 3.88551 4.08739 4.10516 4.30723 4.40403 4.48876 4.51694 4.65672 4.71636 4.84288 4.97413 5.09489 5.32191 5.66745 5.88161 6.06909 6.14572 6.51987 6.57415 6.71304 6.99325 7.16658 7.48855 8.76387 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.026204 B = 0.002417 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.271286 B =11580.070683 C =12107.208423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.026 3.974 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.224 1.224 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.184 3.816 10 O -0.560 6.560 11 C 0.078 3.922 12 N -0.651 5.651 13 C 0.723 3.277 14 O -0.622 6.622 15 N -0.644 5.644 16 C 0.008 3.992 17 C 0.042 3.958 18 N -0.302 5.302 19 N -0.386 5.386 20 C 0.105 3.895 21 C 0.438 3.562 22 F -0.186 7.186 23 F -0.174 7.174 24 F -0.192 7.192 25 C 0.050 3.950 26 C 0.147 3.853 27 H 0.273 0.727 28 H 0.355 0.645 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.421 0.579 32 H 0.184 0.816 33 H 0.153 0.847 34 H 0.190 0.810 35 H 0.234 0.766 36 H 0.069 0.931 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.267 3.743 -15.486 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.148 1.148 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.143 3.857 10 O -0.372 6.372 11 C -0.044 4.044 12 N -0.388 5.388 13 C 0.426 3.574 14 O -0.504 6.504 15 N -0.293 5.293 16 C -0.097 4.097 17 C -0.146 4.146 18 N -0.123 5.123 19 N -0.172 5.172 20 C -0.018 4.018 21 C 0.383 3.617 22 F -0.168 7.168 23 F -0.155 7.155 24 F -0.174 7.174 25 C -0.096 4.096 26 C 0.024 3.976 27 H 0.082 0.918 28 H 0.208 0.792 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.258 0.742 32 H 0.201 0.799 33 H 0.171 0.829 34 H 0.207 0.793 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 23.241 2.068 -15.171 27.832 hybrid contribution -1.368 1.614 0.466 2.167 sum 21.873 3.682 -14.705 26.613 Atomic orbital electron populations 1.70006 1.08099 1.28773 1.49397 1.25858 0.95620 1.02998 0.93068 0.86307 0.80172 0.79166 0.79767 1.18886 1.14766 1.20985 1.21342 0.89516 0.94591 1.52503 0.92538 1.20584 0.90725 0.88742 0.85616 1.86493 1.67299 1.24617 1.58813 1.24442 0.88402 0.91206 1.00370 1.49055 1.11330 1.36162 1.42261 1.15441 0.80343 0.81664 0.79944 1.90745 1.66435 1.33168 1.60053 1.41540 1.13228 1.35262 1.39255 1.17722 0.87450 1.01595 1.02940 1.24419 0.90468 0.99274 1.00454 1.77500 1.20932 1.08443 1.05417 1.48069 1.12562 1.24809 1.31786 1.23191 0.79233 1.10064 0.89297 1.21112 0.87279 0.73832 0.79504 1.93250 1.94013 1.49059 1.80450 1.93225 1.59792 1.92616 1.69862 1.93207 1.94911 1.58975 1.70259 1.22471 0.85391 1.00930 1.00800 1.23171 0.86660 0.96528 0.91237 0.91785 0.79230 0.87559 0.89251 0.74164 0.79894 0.82893 0.79252 0.74968 0.91277 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.29 13.96 21.45 0.30 -50.99 16 2 C 0.03 1.29 5.47 84.66 0.46 1.75 16 3 Si 0.92 35.92 24.34 68.60 1.67 37.59 16 4 H -0.26 -10.08 7.06 99.48 0.70 -9.38 16 5 H -0.22 -7.41 5.28 99.48 0.53 -6.89 16 6 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.54 -27.04 9.20 25.60 0.24 -26.80 16 8 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 9 C 0.18 7.75 1.06 -10.88 -0.01 7.74 16 10 O -0.56 -24.36 13.32 -148.98 -1.98 -26.34 16 11 C 0.08 2.65 7.03 86.48 0.61 3.26 16 12 N -0.65 -23.49 3.61 -858.32 -3.10 -26.58 16 13 C 0.72 25.93 8.73 179.06 1.56 27.49 16 14 O -0.62 -26.31 14.23 -4.03 -0.06 -26.37 16 15 N -0.64 -17.10 5.48 -317.71 -1.74 -18.84 16 16 C 0.01 0.19 6.90 37.59 0.26 0.45 16 17 C 0.04 1.28 10.84 85.33 0.92 2.20 16 18 N -0.30 -8.21 11.50 -56.78 -0.65 -8.87 16 19 N -0.39 -6.66 3.63 -346.99 -1.26 -7.92 16 20 C 0.10 0.78 6.51 86.38 0.56 1.34 16 21 C 0.44 6.34 3.28 71.98 0.24 6.58 16 22 F -0.19 -4.05 16.28 44.97 0.73 -3.32 16 23 F -0.17 -2.18 17.32 44.97 0.78 -1.40 16 24 F -0.19 -3.62 17.24 44.97 0.78 -2.85 16 25 C 0.05 0.77 11.52 83.49 0.96 1.73 16 26 C 0.15 5.80 8.23 86.48 0.71 6.51 16 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.35 14.33 3.31 -74.06 -0.25 14.09 16 29 H 0.11 3.37 8.09 -2.39 -0.02 3.35 16 30 H 0.09 2.61 6.98 -2.39 -0.02 2.59 16 31 H 0.42 8.31 8.44 -92.71 -0.78 7.53 16 32 H 0.18 6.59 5.91 -2.91 -0.02 6.58 16 33 H 0.15 0.48 8.14 -2.39 -0.02 0.47 16 34 H 0.19 -0.50 8.07 -2.39 -0.02 -0.52 16 35 H 0.23 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.10 3.80 8.09 -2.38 -0.02 3.78 16 Total: -1.00 -74.16 328.72 1.94 -72.22 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.04 Total: 31.40 kcal Atomic # 6 Polarization: 25.74 SS G_CDS: 6.51 Total: 32.25 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -6.45 Total: -113.20 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -2.04 Total: -52.71 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 2.29 Total: -7.56 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 1.67 Total: 37.59 kcal Total: -74.16 1.94 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771667800.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.822 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds