Wall clock time and date at job start Tue Mar 31 2020 19:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46725 * 247.99532 * 3 2 1 5 5 C 1.38255 * 119.99843 * 269.97751 * 4 3 2 6 6 C 1.38215 * 119.99743 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.38208 * 120.00010 * 359.79901 * 7 6 5 9 9 S 1.76200 * 120.00305 * 180.23424 * 8 7 6 10 10 O 1.42107 * 106.39717 * 23.73808 * 9 8 7 11 11 O 1.42097 * 106.40128 * 156.65464 * 9 8 7 12 12 N 1.65595 * 107.22213 * 270.19627 * 9 8 7 13 13 C 1.46921 * 120.63229 * 269.71942 * 12 9 8 14 14 C 1.53619 * 108.54755 * 126.36628 * 13 12 9 15 15 C 1.53042 * 109.24141 * 54.85725 * 14 13 12 16 16 C 1.53044 * 109.53837 * 298.51217 * 15 14 13 17 17 H 1.09000 * 109.49454 * 301.41511 * 16 15 14 18 18 C 1.50696 * 109.49969 * 181.31666 * 16 15 14 19 19 H 1.07997 * 119.99945 * 240.16144 * 18 16 15 20 20 C 1.37875 * 120.00072 * 60.16243 * 18 16 15 21 21 N 1.31510 * 120.00111 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00187 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47350 * 89.99558 * 22 20 18 24 24 H 1.48505 * 109.47215 * 210.00289 * 22 20 18 25 25 H 1.48511 * 109.46930 * 329.99764 * 22 20 18 26 26 C 1.46927 * 120.63000 * 89.99566 * 12 9 8 27 27 C 1.38212 * 119.99857 * 90.00742 * 4 3 2 28 28 H 1.09005 * 109.46863 * 127.99929 * 3 2 1 29 29 H 1.08998 * 109.47198 * 7.99491 * 3 2 1 30 30 H 1.08005 * 120.00210 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.99686 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.00044 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.59314 * 246.20092 * 13 12 9 34 34 H 1.09007 * 109.58885 * 6.62495 * 13 12 9 35 35 H 1.09006 * 109.63628 * 294.86540 * 14 13 12 36 36 H 1.08996 * 109.46515 * 174.74564 * 14 13 12 37 37 H 1.09009 * 109.46047 * 178.49721 * 15 14 13 38 38 H 1.08997 * 109.44929 * 58.52657 * 15 14 13 39 39 H 0.97000 * 120.00633 * 180.02562 * 21 20 18 40 40 H 1.08995 * 109.58947 * 353.37833 * 26 12 9 41 41 H 1.09000 * 109.58386 * 113.80510 * 26 12 9 42 42 H 1.08002 * 119.99812 * 359.97106 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1100 0.5333 1.3174 5 6 3.3403 1.8876 1.4729 6 6 3.8002 2.3761 2.6813 7 6 4.0305 1.5104 3.7343 8 6 3.7969 0.1570 3.5800 9 16 4.0845 -0.9457 4.9239 10 8 3.9936 -0.1663 6.1087 11 8 3.2783 -2.0907 4.6830 12 7 5.6579 -1.4505 4.8158 13 6 6.0067 -2.6554 4.0509 14 6 7.0982 -2.2896 3.0337 15 6 8.2779 -1.6488 3.7684 16 6 7.8139 -0.3644 4.4593 17 1 7.4069 0.3216 3.7165 18 6 8.9831 0.2829 5.1555 19 1 8.9578 0.4364 6.2243 20 6 10.0853 0.6793 4.4281 21 7 10.1160 0.4930 3.1267 22 14 11.5350 1.4811 5.2912 23 1 12.4999 0.4346 5.7140 24 1 12.2046 2.4252 4.3608 25 1 11.0528 2.2211 6.4851 26 6 6.7310 -0.7053 5.4880 27 6 3.3409 -0.3323 2.3699 28 1 2.9710 0.6335 -0.8099 29 1 2.9718 -1.0168 -0.1429 30 1 3.1599 2.5640 0.6504 31 1 3.9796 3.4342 2.8028 32 1 4.3894 1.8922 4.6786 33 1 6.3779 -3.4240 4.7288 34 1 5.1248 -3.0232 3.5262 35 1 6.6980 -1.5854 2.3042 36 1 7.4347 -3.1913 2.5221 37 1 9.0658 -1.4120 3.0533 38 1 8.6617 -2.3442 4.5148 39 1 10.8915 0.7715 2.6149 40 1 6.3274 0.2141 5.9119 41 1 7.1602 -1.3180 6.2807 42 1 3.1610 -1.3903 2.2484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594806244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:07 Heat of formation + Delta-G solvation = -29.204113 kcal Electronic energy + Delta-G solvation = -26943.012642 eV Core-core repulsion = 23207.638210 eV Total energy + Delta-G solvation = -3735.374432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.61620 -37.76504 -37.08254 -36.81204 -35.63564 -33.37060 -33.26316 -31.35721 -31.14803 -30.15493 -28.13514 -25.17426 -23.75298 -23.30312 -22.31602 -21.72759 -19.60956 -18.61566 -18.12477 -17.41824 -17.07943 -16.24280 -16.13173 -16.06155 -15.28729 -14.88063 -14.68343 -14.19201 -13.91335 -13.89959 -13.60950 -13.38777 -13.26891 -12.86700 -12.79779 -12.68615 -12.54810 -12.32642 -12.22415 -11.91774 -11.88409 -11.79726 -11.36934 -11.33470 -11.02940 -10.91151 -10.80137 -10.71194 -10.30355 -9.99602 -9.88202 -9.57768 -9.32592 -9.06452 -8.90940 -8.50412 -8.22225 -6.07729 -4.14951 0.53543 0.82724 1.09761 2.51108 2.53802 3.09105 3.25383 3.32856 3.35922 3.41958 3.87383 4.00608 4.28564 4.37032 4.51068 4.69219 4.80068 4.93208 5.09982 5.15672 5.16483 5.23591 5.33972 5.59128 5.62241 5.73245 5.76052 5.93540 5.99208 6.09027 6.19405 6.20664 6.27325 6.42065 6.54892 6.59340 6.68394 6.81271 6.95819 7.14854 7.30562 7.37769 7.64717 7.86734 8.02749 8.33162 8.88750 9.50501 10.97407 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.003982 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.666054 B = 7030.666196 C = 7676.705776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.209 3.791 3 C 0.018 3.982 4 C -0.121 4.121 5 C -0.053 4.053 6 C -0.136 4.136 7 C -0.004 4.004 8 C -0.669 4.669 9 S 2.687 3.313 10 O -0.959 6.959 11 O -0.967 6.967 12 N -0.989 5.989 13 C 0.124 3.876 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.517 4.517 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.125 3.875 27 C -0.007 4.007 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 -1.006 -5.813 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.109 4.109 3 C -0.022 4.022 4 C -0.123 4.123 5 C -0.072 4.072 6 C -0.155 4.155 7 C -0.023 4.023 8 C -0.755 4.755 9 S 2.777 3.223 10 O -0.949 6.949 11 O -0.957 6.957 12 N -0.828 5.828 13 C -0.001 4.001 14 C -0.173 4.173 15 C -0.148 4.148 16 C 0.020 3.980 17 H 0.049 0.951 18 C -0.556 4.556 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C 0.001 3.999 27 C -0.026 4.026 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.648 -1.218 -5.340 12.871 hybrid contribution 1.616 0.942 -0.297 1.894 sum -10.032 -0.276 -5.637 11.511 Atomic orbital electron populations 1.81233 1.12926 1.08619 1.08241 1.29071 0.95051 0.93397 0.93381 1.18167 0.81708 1.05530 0.96753 1.19444 1.03903 0.94200 0.94742 1.21325 0.93870 0.94421 0.97549 1.21292 1.00541 1.00513 0.93132 1.21039 0.90657 0.91243 0.99356 1.31212 1.15453 1.11006 1.17803 1.02061 0.72776 0.73437 0.73983 1.93565 1.85928 1.71725 1.43688 1.93539 1.67198 1.48610 1.86366 1.57622 1.24285 1.36477 1.64462 1.21536 0.98803 0.85700 0.94059 1.22081 0.97532 1.00124 0.97560 1.21579 0.96720 0.96690 0.99825 1.18977 0.92065 0.93699 0.93221 0.95146 1.21107 1.01097 1.39099 0.94253 0.92390 1.24915 0.98331 0.95625 0.94793 1.69866 1.29950 1.47247 1.05552 0.86620 0.82700 0.79322 0.79501 1.20710 1.21316 1.19846 1.21874 0.87629 0.94361 0.96014 1.20767 0.91436 1.00037 0.90376 0.85999 0.85916 0.85036 0.84711 0.83952 0.91331 0.90618 0.92411 0.92588 0.88785 0.94548 0.92999 0.90605 0.91738 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.70 18.54 42.15 0.78 -4.92 16 2 C 0.21 2.07 15.41 -20.76 -0.32 1.75 16 3 C 0.02 0.12 5.83 -30.67 -0.18 -0.06 16 4 C -0.12 -1.19 5.09 -104.62 -0.53 -1.72 16 5 C -0.05 -0.52 9.70 -39.58 -0.38 -0.90 16 6 C -0.14 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C 0.00 -0.05 9.52 -39.59 -0.38 -0.43 16 8 C -0.67 -9.53 5.97 -39.58 -0.24 -9.76 16 9 S 2.69 43.36 5.69 -107.50 -0.61 42.74 16 10 O -0.96 -17.64 16.00 -57.17 -0.91 -18.56 16 11 O -0.97 -16.54 15.99 -57.17 -0.91 -17.46 16 12 N -0.99 -16.40 3.28 -113.28 -0.37 -16.78 16 13 C 0.12 1.86 6.41 -3.49 -0.02 1.84 16 14 C -0.13 -2.19 6.10 -26.39 -0.16 -2.35 16 15 C -0.11 -2.29 4.96 -26.69 -0.13 -2.42 16 16 C 0.04 0.89 2.25 -91.65 -0.21 0.68 16 17 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 18 C -0.52 -12.95 8.56 -34.44 -0.29 -13.24 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -23.38 11.32 55.43 0.63 -22.75 16 22 Si 0.89 20.03 29.54 -169.99 -5.02 15.00 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.12 2.38 5.60 -3.71 -0.02 2.36 16 27 C -0.01 -0.08 9.18 -39.58 -0.36 -0.45 16 28 H 0.12 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.12 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.98 7.12 -51.93 -0.37 0.61 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 2.24 6.05 -51.92 -0.31 1.92 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.08 1.42 7.13 -51.93 -0.37 1.05 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.14 1.48 7.62 -52.49 -0.40 1.08 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -32.04 364.35 -10.27 -42.32 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.62 Total: -0.02 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -3.72 Total: -25.07 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 1.04 Total: -44.45 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -1.83 Total: -36.01 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 43.36 SS G_CDS: -0.61 Total: 42.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.04 -10.27 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594806244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.111 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds