Wall clock time and date at job start Tue Mar 31 2020 19:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46725 * 247.99532 * 3 2 1 5 5 C 1.38255 * 119.99843 * 269.97751 * 4 3 2 6 6 C 1.38215 * 119.99743 * 179.97438 * 5 4 3 7 7 C 1.38256 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.38208 * 120.00010 * 359.79901 * 7 6 5 9 9 S 1.76200 * 120.00305 * 180.23424 * 8 7 6 10 10 O 1.42107 * 106.39717 * 23.73808 * 9 8 7 11 11 O 1.42097 * 106.40128 * 156.65464 * 9 8 7 12 12 N 1.65595 * 107.22213 * 270.19627 * 9 8 7 13 13 C 1.46921 * 120.63229 * 269.71942 * 12 9 8 14 14 C 1.53619 * 108.54755 * 126.36628 * 13 12 9 15 15 C 1.53042 * 109.24141 * 54.85725 * 14 13 12 16 16 C 1.53044 * 109.53837 * 298.51217 * 15 14 13 17 17 H 1.09000 * 109.49454 * 301.41511 * 16 15 14 18 18 C 1.50696 * 109.49969 * 181.31666 * 16 15 14 19 19 H 1.07997 * 119.99945 * 240.16144 * 18 16 15 20 20 C 1.37875 * 120.00072 * 60.16243 * 18 16 15 21 21 N 1.31510 * 120.00111 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00187 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47350 * 89.99558 * 22 20 18 24 24 H 1.48505 * 109.47215 * 210.00289 * 22 20 18 25 25 H 1.48511 * 109.46930 * 329.99764 * 22 20 18 26 26 C 1.46927 * 120.63000 * 89.99566 * 12 9 8 27 27 C 1.38212 * 119.99857 * 90.00742 * 4 3 2 28 28 H 1.09005 * 109.46863 * 127.99929 * 3 2 1 29 29 H 1.08998 * 109.47198 * 7.99491 * 3 2 1 30 30 H 1.08005 * 120.00210 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.99686 * 180.02562 * 6 5 4 32 32 H 1.07998 * 120.00044 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.59314 * 246.20092 * 13 12 9 34 34 H 1.09007 * 109.58885 * 6.62495 * 13 12 9 35 35 H 1.09006 * 109.63628 * 294.86540 * 14 13 12 36 36 H 1.08996 * 109.46515 * 174.74564 * 14 13 12 37 37 H 1.09009 * 109.46047 * 178.49721 * 15 14 13 38 38 H 1.08997 * 109.44929 * 58.52657 * 15 14 13 39 39 H 0.97000 * 120.00633 * 180.02562 * 21 20 18 40 40 H 1.08995 * 109.58947 * 353.37833 * 26 12 9 41 41 H 1.09000 * 109.58386 * 113.80510 * 26 12 9 42 42 H 1.08002 * 119.99812 * 359.97106 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1100 0.5333 1.3174 5 6 3.3403 1.8876 1.4729 6 6 3.8002 2.3761 2.6813 7 6 4.0305 1.5104 3.7343 8 6 3.7969 0.1570 3.5800 9 16 4.0845 -0.9457 4.9239 10 8 3.9936 -0.1663 6.1087 11 8 3.2783 -2.0907 4.6830 12 7 5.6579 -1.4505 4.8158 13 6 6.0067 -2.6554 4.0509 14 6 7.0982 -2.2896 3.0337 15 6 8.2779 -1.6488 3.7684 16 6 7.8139 -0.3644 4.4593 17 1 7.4069 0.3216 3.7165 18 6 8.9831 0.2829 5.1555 19 1 8.9578 0.4364 6.2243 20 6 10.0853 0.6793 4.4281 21 7 10.1160 0.4930 3.1267 22 14 11.5350 1.4811 5.2912 23 1 12.4999 0.4346 5.7140 24 1 12.2046 2.4252 4.3608 25 1 11.0528 2.2211 6.4851 26 6 6.7310 -0.7053 5.4880 27 6 3.3409 -0.3323 2.3699 28 1 2.9710 0.6335 -0.8099 29 1 2.9718 -1.0168 -0.1429 30 1 3.1599 2.5640 0.6504 31 1 3.9796 3.4342 2.8028 32 1 4.3894 1.8922 4.6786 33 1 6.3779 -3.4240 4.7288 34 1 5.1248 -3.0232 3.5262 35 1 6.6980 -1.5854 2.3042 36 1 7.4347 -3.1913 2.5221 37 1 9.0658 -1.4120 3.0533 38 1 8.6617 -2.3442 4.5148 39 1 10.8915 0.7715 2.6149 40 1 6.3274 0.2141 5.9119 41 1 7.1602 -1.3180 6.2807 42 1 3.1610 -1.3903 2.2484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594806244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:06 Heat of formation + Delta-G solvation = -48.583947 kcal Electronic energy + Delta-G solvation = -26943.853014 eV Core-core repulsion = 23207.638210 eV Total energy + Delta-G solvation = -3736.214805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.45399 -39.24538 -38.41564 -37.64129 -36.98219 -35.15284 -34.04982 -32.65057 -32.24474 -31.80378 -28.87354 -26.97939 -25.17169 -24.28453 -23.31271 -23.14028 -21.08951 -19.82760 -19.26145 -18.63092 -18.02421 -18.00808 -17.21457 -17.01595 -16.58869 -16.26901 -15.71529 -15.36131 -15.14631 -14.89709 -14.79420 -14.73575 -14.36676 -14.32422 -14.20290 -13.79690 -13.58964 -13.40200 -13.29142 -13.27227 -13.16154 -12.85797 -12.74259 -12.64059 -12.56775 -12.49884 -12.13495 -11.86400 -11.79028 -11.73408 -11.46466 -11.02326 -10.70900 -10.35924 -10.33611 -9.94187 -9.71856 -8.02498 -6.15386 -0.65317 -0.16150 0.22429 1.45145 1.48111 1.56127 1.75442 1.82825 1.93085 2.44828 2.49392 2.75399 3.20933 3.24938 3.27024 3.70435 3.85457 3.86502 4.05299 4.22171 4.30831 4.33142 4.39571 4.50794 4.63569 4.66312 4.74311 4.83358 4.86766 4.93082 4.95868 5.00659 5.06577 5.15990 5.28578 5.35454 5.36144 5.45044 5.59990 5.71717 5.79106 5.84031 6.06588 6.23549 6.46306 6.60540 6.95340 7.52074 9.00636 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.003982 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.666054 B = 7030.666196 C = 7676.705776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.237 3.763 3 C 0.023 3.977 4 C -0.116 4.116 5 C -0.047 4.047 6 C -0.145 4.145 7 C -0.032 4.032 8 C -0.684 4.684 9 S 2.697 3.303 10 O -0.990 6.990 11 O -0.978 6.978 12 N -0.991 5.991 13 C 0.120 3.880 14 C -0.124 4.124 15 C -0.106 4.106 16 C 0.042 3.958 17 H 0.006 0.994 18 C -0.535 4.535 19 H 0.053 0.947 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.136 3.864 27 C -0.021 4.021 28 H 0.164 0.836 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -1.171 -7.733 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.080 4.080 3 C -0.017 4.017 4 C -0.118 4.118 5 C -0.064 4.064 6 C -0.163 4.163 7 C -0.052 4.052 8 C -0.773 4.773 9 S 2.791 3.209 10 O -0.981 6.981 11 O -0.968 6.968 12 N -0.830 5.830 13 C -0.005 4.005 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.022 3.978 17 H 0.024 0.976 18 C -0.574 4.574 19 H 0.071 0.929 20 C -0.177 4.177 21 N -0.548 5.548 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.196 1.196 26 C 0.011 3.989 27 C -0.040 4.040 28 H 0.181 0.819 29 H 0.170 0.830 30 H 0.189 0.811 31 H 0.172 0.828 32 H 0.148 0.852 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.941 -1.419 -7.225 14.028 hybrid contribution 1.706 1.051 0.245 2.019 sum -10.235 -0.368 -6.980 12.394 Atomic orbital electron populations 1.81273 1.15077 1.10990 1.10313 1.29634 0.95518 0.91391 0.91461 1.18526 0.79141 1.08141 0.95847 1.19788 1.02495 0.94067 0.95461 1.21855 0.91671 0.95117 0.97799 1.21624 1.00226 1.01302 0.93177 1.21147 0.92237 0.91743 1.00076 1.30785 1.17950 1.10616 1.17936 1.01473 0.72237 0.73183 0.73976 1.93517 1.86220 1.72273 1.46093 1.93513 1.67188 1.49443 1.86661 1.57547 1.23690 1.36973 1.64782 1.21732 0.99541 0.85220 0.93970 1.21967 0.96019 1.00804 0.97496 1.21407 0.97722 0.96158 0.99119 1.18882 0.91964 0.93748 0.93215 0.97557 1.21491 1.02323 1.39317 0.94290 0.92919 1.25546 1.00465 0.96275 0.95408 1.69983 1.30424 1.47950 1.06426 0.85768 0.80059 0.78483 0.78565 1.20463 1.21133 1.19644 1.21538 0.87572 0.94593 0.95218 1.21103 0.91361 1.01346 0.90190 0.81886 0.82983 0.81104 0.82773 0.85170 0.90348 0.87862 0.92383 0.90024 0.91921 0.95178 0.93124 0.91089 0.91806 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.35 18.54 20.01 0.37 -11.98 16 2 C 0.24 3.95 15.41 89.44 1.38 5.33 16 3 C 0.02 0.18 5.83 28.05 0.16 0.34 16 4 C -0.12 -1.87 5.09 -19.86 -0.10 -1.97 16 5 C -0.05 -0.74 9.70 22.27 0.22 -0.52 16 6 C -0.14 -3.03 10.05 22.27 0.22 -2.80 16 7 C -0.03 -0.89 9.52 22.27 0.21 -0.68 16 8 C -0.68 -19.13 5.97 22.27 0.13 -19.00 16 9 S 2.70 87.14 5.69 -56.49 -0.32 86.82 16 10 O -0.99 -37.65 16.00 -128.00 -2.05 -39.69 16 11 O -0.98 -32.61 15.99 -128.00 -2.05 -34.66 16 12 N -0.99 -32.64 3.28 -512.30 -1.68 -34.32 16 13 C 0.12 3.38 6.41 86.51 0.55 3.93 16 14 C -0.12 -3.86 6.10 30.82 0.19 -3.67 16 15 C -0.11 -4.42 4.96 30.62 0.15 -4.27 16 16 C 0.04 1.89 2.25 -11.46 -0.03 1.87 16 17 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 18 C -0.54 -27.44 8.56 25.60 0.22 -27.22 16 19 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 20 C 0.02 1.16 5.30 84.65 0.45 1.61 16 21 N -0.91 -48.54 11.32 21.45 0.24 -48.30 16 22 Si 0.94 41.39 29.54 68.60 2.03 43.42 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.14 5.27 5.60 86.36 0.48 5.76 16 27 C -0.02 -0.46 9.18 22.27 0.20 -0.25 16 28 H 0.16 0.11 8.09 -2.38 -0.02 0.09 16 29 H 0.15 0.47 8.09 -2.39 -0.02 0.45 16 30 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.13 3.71 7.62 -2.91 -0.02 3.69 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 2.38 7.12 -2.38 -0.02 2.36 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 3.03 6.05 -2.38 -0.01 3.01 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 40 H 0.07 2.79 7.13 -2.39 -0.02 2.77 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.15 2.84 7.62 -2.91 -0.02 2.82 16 Total: -1.00 -72.19 364.35 2.02 -70.17 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 1.03 Total: 10.09 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 4.45 Total: -41.55 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -1.07 Total: -94.60 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -4.09 Total: -74.35 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 87.14 SS G_CDS: -0.32 Total: 86.82 kcal Total: -72.19 2.02 -70.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594806244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.583 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds