Wall clock time and date at job start Tue Mar 31 2020 18:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 2.05391 * 3 2 1 5 5 N 1.46496 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00120 * 274.99550 * 5 4 3 7 7 C 1.50697 * 109.47454 * 275.00528 * 6 5 4 8 8 H 1.08002 * 119.99892 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00213 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47233 * 120.00082 * 11 9 7 14 14 H 1.48504 * 109.46938 * 240.00118 * 11 9 7 15 15 S 1.65600 * 120.00323 * 94.99995 * 5 4 3 16 16 O 1.42101 * 104.27316 * 333.93033 * 15 5 4 17 17 O 1.42093 * 104.27891 * 206.06892 * 15 5 4 18 18 C 1.81398 * 104.44946 * 89.99675 * 15 5 4 19 19 C 1.54347 * 110.82246 * 180.02562 * 18 15 5 20 20 C 1.51370 * 105.25432 * 215.37738 * 19 18 15 21 21 C 1.38309 * 130.55124 * 197.14857 * 20 19 18 22 22 C 1.38105 * 120.28108 * 180.02562 * 21 20 19 23 23 C 1.38256 * 119.93490 * 0.03279 * 22 21 20 24 24 C 1.38107 * 119.93596 * 359.97438 * 23 22 21 25 25 C 1.38451 * 109.62635 * 17.23355 * 20 19 18 26 26 C 1.51365 * 109.79657 * 359.95699 * 25 20 19 27 27 H 1.09002 * 109.47446 * 242.04776 * 3 2 1 28 28 H 1.09005 * 109.46804 * 122.05571 * 3 2 1 29 29 H 1.09000 * 109.47105 * 60.00036 * 4 3 2 30 30 H 1.08998 * 109.46609 * 299.99785 * 4 3 2 31 31 H 1.09002 * 109.46901 * 35.00192 * 6 5 4 32 32 H 1.08996 * 109.47168 * 155.00062 * 6 5 4 33 33 H 0.97005 * 120.00156 * 180.02562 * 10 9 7 34 34 H 1.09008 * 110.88421 * 303.52024 * 18 15 5 35 35 H 1.09002 * 110.30226 * 334.35178 * 19 18 15 36 36 H 1.08997 * 110.30441 * 96.40739 * 19 18 15 37 37 H 1.07991 * 119.82817 * 0.06382 * 21 20 19 38 38 H 1.07992 * 120.03227 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.03517 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.89218 * 180.02562 * 24 23 22 41 41 H 1.08994 * 110.30543 * 223.91072 * 26 25 20 42 42 H 1.09006 * 110.38145 * 101.80589 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4406 -0.0517 5 7 4.5837 -1.4398 -0.0523 6 6 5.3156 -1.2839 -1.3118 7 6 5.4599 -2.6276 -1.9787 8 1 5.0480 -3.5096 -1.5109 9 6 6.1187 -2.7311 -3.1854 10 7 6.6207 -1.6571 -3.7548 11 14 6.2982 -4.3968 -4.0117 12 1 5.6515 -5.4377 -3.1729 13 1 5.6469 -4.3603 -5.3457 14 1 7.7394 -4.7166 -4.1729 15 16 5.4124 -1.6153 1.3706 16 8 4.5165 -1.1282 2.3602 17 8 6.6584 -0.9754 1.1317 18 6 5.6397 -3.4066 1.5441 19 6 6.4069 -3.7392 2.8415 20 6 7.2716 -4.9332 2.4979 21 6 7.9175 -5.8412 3.3172 22 6 8.6632 -6.8662 2.7689 23 6 8.7661 -6.9863 1.3954 24 6 8.1225 -6.0813 0.5744 25 6 7.3746 -5.0523 1.1223 26 6 6.5860 -3.9480 0.4517 27 1 2.9712 0.4825 0.9078 28 1 2.9710 0.5463 -0.8710 29 1 2.7556 -1.9224 -0.9595 30 1 2.7556 -1.9861 0.8193 31 1 4.7676 -0.6090 -1.9693 32 1 6.3037 -0.8709 -1.1091 33 1 7.0839 -1.7299 -4.6040 34 1 4.6808 -3.9243 1.5178 35 1 7.0288 -2.8952 3.1401 36 1 5.7089 -3.9946 3.6387 37 1 7.8376 -5.7481 4.3901 38 1 9.1655 -7.5731 3.4124 39 1 9.3484 -7.7875 0.9650 40 1 8.2030 -6.1760 -0.4984 41 1 6.0105 -4.3476 -0.3832 42 1 7.2550 -3.1597 0.1061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610576726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:33 Heat of formation + Delta-G solvation = -19.113094 kcal Electronic energy + Delta-G solvation = -27023.068090 eV Core-core repulsion = 23288.131238 eV Total energy + Delta-G solvation = -3734.936853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.93870 -37.19240 -36.73663 -35.82490 -35.57695 -35.47075 -32.89463 -31.35607 -30.71700 -29.11205 -27.34016 -26.97920 -23.87643 -23.05549 -22.15170 -20.96598 -20.86073 -18.31173 -17.56047 -17.19333 -16.73006 -16.43836 -15.98280 -15.73215 -15.50222 -14.82043 -14.67036 -14.58707 -13.87197 -13.82008 -13.43723 -13.25395 -13.00537 -12.79616 -12.71196 -12.61709 -12.53855 -12.31346 -12.03168 -11.75826 -11.67963 -11.48279 -11.40436 -11.30502 -11.24800 -11.10965 -11.03521 -10.75871 -10.65538 -10.55820 -10.34398 -10.01210 -9.76320 -8.74302 -8.60790 -8.40444 -8.23452 -6.23034 -4.29627 0.69400 1.41592 1.48151 2.85741 2.96915 3.13141 3.16005 3.26093 3.26769 3.81621 4.08054 4.21428 4.26338 4.32013 4.51471 4.73449 4.98290 5.03733 5.08341 5.11444 5.13199 5.15079 5.31056 5.31271 5.49493 5.61583 5.65906 5.69156 5.73564 5.78912 5.97608 6.15654 6.20654 6.24742 6.32905 6.46367 6.51029 6.57208 6.79483 7.08345 7.15250 7.29362 7.45049 7.72568 7.73297 8.00684 8.73639 9.36462 10.84826 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.005433 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.558704 B = 5152.368405 C = 7234.129231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.222 3.778 3 C -0.052 4.052 4 C 0.139 3.861 5 N -0.982 5.982 6 C 0.240 3.760 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.070 3.930 10 N -0.884 5.884 11 Si 0.883 3.117 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.281 1.281 15 S 2.616 3.384 16 O -0.972 6.972 17 O -0.945 6.945 18 C -0.598 4.598 19 C -0.056 4.056 20 C -0.099 4.099 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.108 4.108 25 C -0.075 4.075 26 C -0.059 4.059 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 -6.202 10.277 12.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.095 4.095 3 C -0.094 4.094 4 C 0.010 3.990 5 N -0.819 5.819 6 C 0.118 3.882 7 C -0.587 4.587 8 H 0.087 0.913 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.711 3.289 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.207 1.207 15 S 2.708 3.292 16 O -0.962 6.962 17 O -0.935 6.935 18 C -0.705 4.705 19 C -0.094 4.094 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.075 4.075 26 C -0.096 4.096 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.399 -5.427 10.660 11.968 hybrid contribution 0.507 -1.693 -0.905 1.985 sum 0.906 -7.120 9.755 12.111 Atomic orbital electron populations 1.81176 1.13100 1.08880 1.09854 1.29138 0.95131 0.92891 0.92388 1.19903 0.81240 1.01718 1.06577 1.20896 0.80708 0.93507 1.03884 1.57423 1.12798 1.86728 1.24935 1.19355 0.92662 0.97595 0.78567 1.21648 1.37023 0.94119 1.05883 0.91309 1.24882 0.95175 0.96413 0.96941 1.69922 1.36387 1.28013 1.17829 0.86677 0.78127 0.84294 0.79838 1.19490 1.20896 1.20728 1.04838 0.74231 0.76845 0.73306 1.93539 1.65009 1.77774 1.59881 1.93587 1.44366 1.71217 1.84343 1.31472 1.07722 1.28439 1.02885 1.20672 0.96834 0.96642 0.95256 1.20423 0.98878 0.96384 0.94277 1.20499 0.97933 0.94810 0.99230 1.20950 1.00031 0.98563 0.95154 1.21032 0.99832 0.99190 0.93652 1.20712 0.97312 0.94296 1.00251 1.20813 0.96781 0.95636 0.94318 1.21097 0.95949 0.96755 0.95809 0.86909 0.86441 0.88800 0.90698 0.93835 0.92363 0.92501 0.84384 0.89984 0.89265 0.86391 0.86139 0.86054 0.85886 0.86871 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.32 18.54 42.15 0.78 -6.53 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.05 -0.65 6.02 -29.52 -0.18 -0.83 16 4 C 0.14 1.91 5.21 -4.05 -0.02 1.89 16 5 N -0.98 -16.32 2.70 -115.67 -0.31 -16.63 16 6 C 0.24 4.96 5.41 -5.19 -0.03 4.93 16 7 C -0.55 -12.15 7.46 -34.44 -0.26 -12.40 16 8 H 0.07 1.43 5.72 -52.49 -0.30 1.13 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.88 -22.95 13.29 55.43 0.74 -22.22 16 11 Si 0.88 18.85 29.54 -169.99 -5.02 13.83 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 S 2.62 43.08 4.79 -107.50 -0.52 42.57 16 16 O -0.97 -16.38 16.75 -57.54 -0.96 -17.34 16 17 O -0.94 -18.74 15.80 -57.54 -0.91 -19.65 16 18 C -0.60 -8.61 3.81 -25.32 -0.10 -8.71 16 19 C -0.06 -0.73 6.33 -26.85 -0.17 -0.90 16 20 C -0.10 -1.39 6.15 -104.19 -0.64 -2.03 16 21 C -0.11 -1.30 10.03 -39.60 -0.40 -1.69 16 22 C -0.13 -1.47 10.05 -39.62 -0.40 -1.87 16 23 C -0.12 -1.45 10.05 -39.62 -0.40 -1.85 16 24 C -0.11 -1.55 10.04 -39.53 -0.40 -1.95 16 25 C -0.07 -1.16 6.14 -104.12 -0.64 -1.80 16 26 C -0.06 -0.97 4.93 -26.86 -0.13 -1.10 16 27 H 0.11 1.34 7.90 -51.93 -0.41 0.93 16 28 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 30 H 0.07 0.90 7.61 -51.93 -0.40 0.50 16 31 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.06 1.35 6.82 -51.93 -0.35 1.00 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 34 H 0.14 1.69 8.14 -51.92 -0.42 1.26 16 35 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.11 1.94 5.56 -51.93 -0.29 1.65 16 42 H 0.11 1.98 7.17 -51.93 -0.37 1.61 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -29.53 365.07 -10.34 -39.87 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.47 Total: 4.59 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -4.17 Total: -23.98 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 1.21 Total: -45.38 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.87 Total: -37.00 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -0.52 Total: 42.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.53 -10.34 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610576726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.754 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds