Wall clock time and date at job start Tue Mar 31 2020 18:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 2.05391 * 3 2 1 5 5 N 1.46496 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00120 * 274.99550 * 5 4 3 7 7 C 1.50697 * 109.47454 * 275.00528 * 6 5 4 8 8 H 1.08002 * 119.99892 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00213 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99921 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00189 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47233 * 120.00082 * 11 9 7 14 14 H 1.48504 * 109.46938 * 240.00118 * 11 9 7 15 15 S 1.65600 * 120.00323 * 94.99995 * 5 4 3 16 16 O 1.42101 * 104.27316 * 333.93033 * 15 5 4 17 17 O 1.42093 * 104.27891 * 206.06892 * 15 5 4 18 18 C 1.81398 * 104.44946 * 89.99675 * 15 5 4 19 19 C 1.54347 * 110.82246 * 180.02562 * 18 15 5 20 20 C 1.51370 * 105.25432 * 215.37738 * 19 18 15 21 21 C 1.38309 * 130.55124 * 197.14857 * 20 19 18 22 22 C 1.38105 * 120.28108 * 180.02562 * 21 20 19 23 23 C 1.38256 * 119.93490 * 0.03279 * 22 21 20 24 24 C 1.38107 * 119.93596 * 359.97438 * 23 22 21 25 25 C 1.38451 * 109.62635 * 17.23355 * 20 19 18 26 26 C 1.51365 * 109.79657 * 359.95699 * 25 20 19 27 27 H 1.09002 * 109.47446 * 242.04776 * 3 2 1 28 28 H 1.09005 * 109.46804 * 122.05571 * 3 2 1 29 29 H 1.09000 * 109.47105 * 60.00036 * 4 3 2 30 30 H 1.08998 * 109.46609 * 299.99785 * 4 3 2 31 31 H 1.09002 * 109.46901 * 35.00192 * 6 5 4 32 32 H 1.08996 * 109.47168 * 155.00062 * 6 5 4 33 33 H 0.97005 * 120.00156 * 180.02562 * 10 9 7 34 34 H 1.09008 * 110.88421 * 303.52024 * 18 15 5 35 35 H 1.09002 * 110.30226 * 334.35178 * 19 18 15 36 36 H 1.08997 * 110.30441 * 96.40739 * 19 18 15 37 37 H 1.07991 * 119.82817 * 0.06382 * 21 20 19 38 38 H 1.07992 * 120.03227 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.03517 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.89218 * 180.02562 * 24 23 22 41 41 H 1.08994 * 110.30543 * 223.91072 * 26 25 20 42 42 H 1.09006 * 110.38145 * 101.80589 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4406 -0.0517 5 7 4.5837 -1.4398 -0.0523 6 6 5.3156 -1.2839 -1.3118 7 6 5.4599 -2.6276 -1.9787 8 1 5.0480 -3.5096 -1.5109 9 6 6.1187 -2.7311 -3.1854 10 7 6.6207 -1.6571 -3.7548 11 14 6.2982 -4.3968 -4.0117 12 1 5.6515 -5.4377 -3.1729 13 1 5.6469 -4.3603 -5.3457 14 1 7.7394 -4.7166 -4.1729 15 16 5.4124 -1.6153 1.3706 16 8 4.5165 -1.1282 2.3602 17 8 6.6584 -0.9754 1.1317 18 6 5.6397 -3.4066 1.5441 19 6 6.4069 -3.7392 2.8415 20 6 7.2716 -4.9332 2.4979 21 6 7.9175 -5.8412 3.3172 22 6 8.6632 -6.8662 2.7689 23 6 8.7661 -6.9863 1.3954 24 6 8.1225 -6.0813 0.5744 25 6 7.3746 -5.0523 1.1223 26 6 6.5860 -3.9480 0.4517 27 1 2.9712 0.4825 0.9078 28 1 2.9710 0.5463 -0.8710 29 1 2.7556 -1.9224 -0.9595 30 1 2.7556 -1.9861 0.8193 31 1 4.7676 -0.6090 -1.9693 32 1 6.3037 -0.8709 -1.1091 33 1 7.0839 -1.7299 -4.6040 34 1 4.6808 -3.9243 1.5178 35 1 7.0288 -2.8952 3.1401 36 1 5.7089 -3.9946 3.6387 37 1 7.8376 -5.7481 4.3901 38 1 9.1655 -7.5731 3.4124 39 1 9.3484 -7.7875 0.9650 40 1 8.2030 -6.1760 -0.4984 41 1 6.0105 -4.3476 -0.3832 42 1 7.2550 -3.1597 0.1061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610576726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:32 Heat of formation + Delta-G solvation = -35.512652 kcal Electronic energy + Delta-G solvation = -27023.779229 eV Core-core repulsion = 23288.131238 eV Total energy + Delta-G solvation = -3735.647991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96415 -38.43860 -38.12746 -37.12621 -36.88061 -36.65149 -34.61791 -32.38240 -32.02340 -30.15454 -28.76478 -28.28498 -25.31438 -24.17216 -23.57592 -22.06120 -21.86902 -19.64873 -18.84488 -18.51483 -18.27100 -17.71278 -17.11093 -17.01292 -16.69095 -16.19848 -15.83502 -15.77449 -15.22093 -15.01807 -14.66879 -14.35528 -14.25266 -14.03754 -13.93284 -13.87201 -13.67293 -13.58815 -13.44029 -13.12367 -13.08055 -12.92247 -12.86712 -12.62610 -12.52326 -12.40445 -12.24388 -12.18171 -11.95028 -11.75004 -11.71354 -11.36227 -11.33482 -10.48445 -9.74141 -9.70739 -9.41841 -8.08680 -6.17650 -0.62709 0.43193 0.48952 1.43788 1.49060 1.55457 1.65403 1.84244 1.88289 2.46948 2.79014 2.88471 3.07053 3.08334 3.26121 3.38074 3.61012 3.90556 3.97348 4.02112 4.14437 4.18236 4.21320 4.30195 4.49969 4.55867 4.62505 4.63935 4.69439 4.81050 4.91281 4.97668 5.06885 5.15405 5.21181 5.24645 5.49241 5.54388 5.60205 5.61946 5.74834 5.85756 5.96273 6.12853 6.21342 6.60628 6.94223 7.50775 8.99537 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.005433 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.558704 B = 5152.368405 C = 7234.129231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.047 4.047 4 C 0.129 3.871 5 N -0.982 5.982 6 C 0.253 3.747 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.020 3.980 10 N -0.925 5.925 11 Si 0.933 3.067 12 H -0.255 1.255 13 H -0.288 1.288 14 H -0.288 1.288 15 S 2.622 3.378 16 O -0.973 6.973 17 O -0.985 6.985 18 C -0.583 4.583 19 C -0.061 4.061 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.106 4.106 26 C -0.059 4.059 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.166 0.834 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -8.512 12.541 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.070 4.070 3 C -0.089 4.089 4 C 0.001 3.999 5 N -0.819 5.819 6 C 0.130 3.870 7 C -0.572 4.572 8 H 0.101 0.899 9 C -0.179 4.179 10 N -0.566 5.566 11 Si 0.760 3.240 12 H -0.179 1.179 13 H -0.215 1.215 14 H -0.214 1.214 15 S 2.717 3.283 16 O -0.963 6.963 17 O -0.976 6.976 18 C -0.693 4.693 19 C -0.099 4.099 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.107 4.107 26 C -0.096 4.096 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.184 0.816 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.135 0.865 41 H 0.119 0.881 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.002 -7.719 12.941 15.068 hybrid contribution 0.673 -1.028 -1.511 1.948 sum 0.672 -8.747 11.429 14.408 Atomic orbital electron populations 1.81207 1.14222 1.10152 1.11289 1.29188 0.94994 0.91682 0.91113 1.19918 0.80250 1.01203 1.07524 1.21153 0.78848 0.94641 1.05226 1.57222 1.13983 1.87296 1.23388 1.18907 0.91593 0.96599 0.79885 1.22019 1.34937 0.95181 1.05034 0.89851 1.25544 0.95621 0.98722 0.98050 1.70038 1.38325 1.29834 1.18352 0.85881 0.77600 0.81731 0.78835 1.17868 1.21480 1.21388 1.04522 0.73206 0.77675 0.72894 1.93530 1.64709 1.78553 1.59549 1.93540 1.46165 1.73107 1.84790 1.31303 1.08998 1.25728 1.03294 1.20826 0.97396 0.96594 0.95134 1.20598 0.99500 0.97057 0.93810 1.20898 0.97007 0.94102 1.00637 1.21401 0.98992 0.98529 0.95155 1.21364 0.99286 0.99076 0.94168 1.20888 0.98206 0.95101 1.00531 1.20834 0.98362 0.96214 0.95285 1.20911 0.95931 0.96520 0.96250 0.85928 0.85586 0.88558 0.88289 0.94674 0.95444 0.92928 0.81580 0.89945 0.86104 0.83479 0.82755 0.83641 0.86510 0.88138 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.36 18.54 20.00 0.37 -14.98 16 2 C 0.25 6.51 15.43 89.44 1.38 7.89 16 3 C -0.05 -1.10 6.02 28.79 0.17 -0.93 16 4 C 0.13 3.34 5.21 86.38 0.45 3.79 16 5 N -0.98 -32.26 2.70 -519.86 -1.40 -33.66 16 6 C 0.25 10.73 5.41 85.63 0.46 11.20 16 7 C -0.53 -23.88 7.46 25.60 0.19 -23.69 16 8 H 0.08 3.43 5.72 -2.91 -0.02 3.41 16 9 C 0.02 1.00 5.46 84.65 0.46 1.46 16 10 N -0.93 -49.74 13.29 21.45 0.28 -49.46 16 11 Si 0.93 39.15 29.54 68.60 2.03 41.18 16 12 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 13 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 15 S 2.62 84.89 4.79 -56.49 -0.27 84.62 16 16 O -0.97 -31.10 16.75 -127.65 -2.14 -33.24 16 17 O -0.99 -40.26 15.80 -127.65 -2.02 -42.27 16 18 C -0.58 -15.95 3.81 31.51 0.12 -15.83 16 19 C -0.06 -1.47 6.33 30.52 0.19 -1.28 16 20 C -0.11 -2.83 6.15 -19.58 -0.12 -2.95 16 21 C -0.11 -2.26 10.03 22.25 0.22 -2.03 16 22 C -0.12 -2.34 10.05 22.24 0.22 -2.12 16 23 C -0.12 -2.65 10.05 22.24 0.22 -2.43 16 24 C -0.13 -3.62 10.04 22.30 0.22 -3.40 16 25 C -0.11 -3.23 6.14 -19.54 -0.12 -3.35 16 26 C -0.06 -1.94 4.93 30.51 0.15 -1.79 16 27 H 0.12 2.71 7.90 -2.39 -0.02 2.69 16 28 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.10 2.48 8.11 -2.39 -0.02 2.46 16 30 H 0.10 2.11 7.61 -2.39 -0.02 2.09 16 31 H 0.04 1.54 8.11 -2.39 -0.02 1.52 16 32 H 0.03 1.35 6.82 -2.39 -0.02 1.33 16 33 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 34 H 0.17 3.58 8.14 -2.38 -0.02 3.56 16 35 H 0.08 1.96 7.86 -2.39 -0.02 1.94 16 36 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.15 2.15 8.06 -2.92 -0.02 2.12 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.10 3.46 5.56 -2.39 -0.01 3.44 16 42 H 0.08 2.97 7.17 -2.38 -0.02 2.95 16 Total: -1.00 -65.13 365.07 2.13 -63.00 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 1.04 Total: 20.26 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.24 Total: -35.45 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -0.75 Total: -98.10 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -4.16 Total: -75.51 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 84.89 SS G_CDS: -0.27 Total: 84.62 kcal Total: -65.13 2.13 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610576726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.483 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds