Wall clock time and date at job start Tue Mar 31 2020 19:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00257 * 2 1 4 4 H 1.48507 * 109.46723 * 90.00586 * 3 2 1 5 5 H 1.48498 * 109.47322 * 210.00183 * 3 2 1 6 6 H 1.48498 * 109.47025 * 330.00605 * 3 2 1 7 7 C 1.37884 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00044 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00389 * 270.00223 * 10 9 7 12 12 O 1.21289 * 120.00320 * 184.73802 * 11 10 9 13 13 C 1.50702 * 119.99539 * 4.73698 * 11 10 9 14 14 C 1.53007 * 109.46858 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.53579 * 56.39377 * 14 13 11 16 16 C 1.54229 * 110.60549 * 179.40931 * 14 13 11 17 17 C 1.51314 * 103.55269 * 118.51620 * 16 14 13 18 18 O 1.21223 * 125.39515 * 179.97438 * 17 16 14 19 19 N 1.33882 * 109.20850 * 0.02562 * 17 16 14 20 20 C 1.33878 * 114.47550 * 359.97438 * 19 17 16 21 21 O 1.21228 * 125.39630 * 180.02562 * 20 19 17 22 22 C 1.40040 * 119.99772 * 89.99740 * 10 9 7 23 23 C 1.38844 * 120.04334 * 67.62986 * 22 10 9 24 24 C 1.38116 * 119.95388 * 179.72019 * 23 22 10 25 25 C 1.38474 * 120.04398 * 0.57769 * 24 23 22 26 26 F 1.35095 * 119.95421 * 179.70107 * 25 24 23 27 27 C 1.38475 * 120.09035 * 359.67676 * 25 24 23 28 28 C 1.38113 * 120.04299 * 0.04493 * 27 25 24 29 29 H 0.97001 * 119.99668 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47223 * 299.99404 * 9 7 2 31 31 H 1.08994 * 109.47280 * 59.99747 * 9 7 2 32 32 H 1.09000 * 109.47285 * 299.99979 * 13 11 10 33 33 H 1.08999 * 109.47285 * 60.00288 * 13 11 10 34 34 H 1.08997 * 110.60566 * 237.03676 * 16 14 13 35 35 H 1.08995 * 110.60616 * 0.02562 * 16 14 13 36 36 H 0.96999 * 122.75904 * 179.97438 * 19 17 16 37 37 H 1.08009 * 120.02140 * 359.97438 * 23 22 10 38 38 H 1.08002 * 119.97604 * 180.27593 * 24 23 22 39 39 H 1.07992 * 119.97850 * 180.02562 * 27 25 24 40 40 H 1.08000 * 120.02402 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4002 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2249 -3.2105 1.1662 12 8 4.7100 -4.3222 1.1680 13 6 3.8739 -2.5394 2.4690 14 6 4.2278 -3.4678 3.6326 15 1 5.2805 -3.7479 3.5917 16 6 3.8923 -2.7998 4.9815 17 6 2.8583 -3.7236 5.5873 18 8 2.3205 -3.5668 6.6623 19 7 2.6324 -4.7423 4.7485 20 6 3.3485 -4.6992 3.6181 21 8 3.2999 -5.5170 2.7245 22 6 4.2327 -3.2357 -1.2137 23 6 5.2640 -2.8196 -2.0450 24 6 5.4957 -3.4759 -3.2380 25 6 4.6927 -4.5407 -3.6108 26 9 4.9172 -5.1775 -4.7809 27 6 3.6603 -4.9539 -2.7856 28 6 3.4289 -4.3039 -1.5892 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6802 -0.8911 31 1 3.8752 -0.6805 0.8888 32 1 4.4360 -1.6102 2.5622 33 1 2.8060 -2.3216 2.4894 34 1 4.7780 -2.7476 5.6146 35 1 3.4728 -1.8062 4.8237 36 1 2.0018 -5.4530 4.9437 37 1 5.8873 -1.9858 -1.7570 38 1 6.3007 -3.1554 -3.8827 39 1 3.0354 -5.7848 -3.0780 40 1 2.6234 -4.6262 -0.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932315320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:49 Heat of formation + Delta-G solvation = -111.441473 kcal Electronic energy + Delta-G solvation = -28776.970809 eV Core-core repulsion = 24471.817121 eV Total energy + Delta-G solvation = -4305.153688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.66034 -41.80199 -39.99442 -38.56724 -37.86117 -35.80235 -35.16751 -33.51886 -32.66493 -30.90109 -29.95656 -28.48651 -27.49038 -25.12195 -23.15992 -22.54588 -22.32153 -21.70366 -20.67875 -18.96655 -17.88282 -17.45092 -17.26853 -16.77959 -16.72407 -16.22092 -16.05264 -15.85429 -15.33455 -15.16043 -14.57656 -14.39825 -14.23365 -14.00146 -13.75103 -13.61286 -13.30899 -13.02825 -12.90077 -12.76093 -12.61317 -12.39377 -12.09339 -11.90194 -11.75068 -11.30162 -11.22033 -10.86962 -10.82362 -10.64073 -10.42586 -10.25196 -9.88278 -9.78455 -9.32778 -8.86147 -8.83163 -8.64558 -7.76342 -6.33482 -4.37068 1.38406 1.51884 1.55165 2.74263 2.82336 3.06375 3.09240 3.14905 3.17690 3.47547 3.86883 4.06725 4.14573 4.21067 4.34518 4.50556 4.69580 4.95688 5.00761 5.06824 5.12028 5.27119 5.35327 5.50801 5.55576 5.63240 5.66472 5.79217 5.98252 6.04015 6.13314 6.31482 6.33968 6.44487 6.46354 6.65371 6.75494 6.93312 7.27295 7.32226 7.39097 7.85412 7.93095 8.22749 8.66906 8.74681 9.23930 10.78764 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.004870 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.408577 B = 5748.398027 C = 8073.342159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.209 3.791 10 N -0.558 5.558 11 C 0.516 3.484 12 O -0.524 6.524 13 C -0.125 4.125 14 C -0.109 4.109 15 H 0.128 0.872 16 C -0.157 4.157 17 C 0.533 3.467 18 O -0.494 6.494 19 N -0.685 5.685 20 C 0.525 3.475 21 O -0.441 6.441 22 C 0.167 3.833 23 C -0.099 4.099 24 C -0.146 4.146 25 C 0.081 3.919 26 F -0.146 7.146 27 C -0.143 4.143 28 C -0.071 4.071 29 H 0.268 0.732 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.412 0.588 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.378 -3.414 4.041 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.208 1.208 7 C -0.585 4.585 8 H 0.097 0.903 9 C 0.090 3.910 10 N -0.287 5.287 11 C 0.304 3.696 12 O -0.400 6.400 13 C -0.165 4.165 14 C -0.130 4.130 15 H 0.146 0.854 16 C -0.196 4.196 17 C 0.321 3.679 18 O -0.367 6.367 19 N -0.351 5.351 20 C 0.311 3.689 21 O -0.308 6.308 22 C 0.076 3.924 23 C -0.119 4.119 24 C -0.166 4.166 25 C 0.062 3.938 26 F -0.125 7.125 27 C -0.162 4.162 28 C -0.091 4.091 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.251 0.749 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.280 -4.118 4.053 11.792 hybrid contribution -0.248 0.671 -0.222 0.749 sum 10.032 -3.447 3.831 11.278 Atomic orbital electron populations 1.69879 1.06252 1.27393 1.48719 1.24863 0.94722 0.98871 0.94086 0.86961 0.80541 0.83995 0.78979 1.19667 1.18806 1.20751 1.21307 0.88747 0.95150 1.53250 0.90283 1.19961 0.96271 0.76796 0.98019 1.45581 1.64586 1.15894 1.02613 1.20374 0.78233 0.85824 0.85173 1.90764 1.43088 1.18825 1.87277 1.21635 1.06156 0.98625 0.90076 1.21863 1.02630 0.93638 0.94910 0.85370 1.22612 0.99961 1.00972 0.96067 1.20760 0.82189 0.81592 0.83331 1.90795 1.51691 1.74016 1.20178 1.44868 1.41939 1.27118 1.21159 1.20707 0.80173 0.87615 0.80428 1.90887 1.62911 1.41588 1.35403 1.17527 0.93850 0.93615 0.87448 1.21024 0.96609 1.00255 0.93981 1.20859 1.01029 0.96525 0.98152 1.17635 0.98216 0.94712 0.83220 1.91455 1.94338 1.81077 1.45653 1.20958 0.98344 1.01968 0.94960 1.21149 0.97927 0.94922 0.95052 0.92181 0.94436 0.94706 0.87133 0.86525 0.85995 0.85514 0.74892 0.85075 0.84890 0.84856 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 13.96 55.43 0.77 -23.68 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 18.29 27.47 -169.99 -4.67 13.62 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.55 -13.27 9.71 -34.44 -0.33 -13.60 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 9 C 0.21 4.14 3.95 -5.19 -0.02 4.12 16 10 N -0.56 -10.46 2.51 -114.72 -0.29 -10.75 16 11 C 0.52 9.16 7.20 -10.99 -0.08 9.08 16 12 O -0.52 -10.43 13.33 -17.46 -0.23 -10.66 16 13 C -0.13 -1.72 3.70 -27.88 -0.10 -1.82 16 14 C -0.11 -1.23 2.72 -90.82 -0.25 -1.47 16 15 H 0.13 1.31 8.03 -51.93 -0.42 0.89 16 16 C -0.16 -1.34 6.67 -26.94 -0.18 -1.52 16 17 C 0.53 6.17 8.55 -11.08 -0.09 6.07 16 18 O -0.49 -7.20 18.02 5.61 0.10 -7.09 16 19 N -0.68 -8.00 5.48 -11.39 -0.06 -8.06 16 20 C 0.53 7.38 7.71 -11.08 -0.09 7.30 16 21 O -0.44 -8.11 15.42 -17.41 -0.27 -8.38 16 22 C 0.17 3.08 4.76 -83.66 -0.40 2.68 16 23 C -0.10 -1.57 9.68 -39.40 -0.38 -1.95 16 24 C -0.15 -2.12 10.02 -39.54 -0.40 -2.52 16 25 C 0.08 1.27 7.30 -39.41 -0.29 0.98 16 26 F -0.15 -2.21 17.26 2.25 0.04 -2.17 16 27 C -0.14 -2.29 10.02 -39.54 -0.40 -2.69 16 28 C -0.07 -1.30 9.55 -39.40 -0.38 -1.67 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.04 0.75 6.91 -51.93 -0.36 0.39 16 31 H 0.04 0.62 5.90 -51.93 -0.31 0.31 16 32 H 0.11 1.21 7.26 -51.93 -0.38 0.83 16 33 H 0.12 1.79 7.91 -51.93 -0.41 1.38 16 34 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.13 0.98 7.74 -51.93 -0.40 0.57 16 36 H 0.41 4.24 8.96 -40.82 -0.37 3.88 16 37 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -32.53 350.65 -7.14 -39.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.34 Total: 7.35 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.48 Total: 4.87 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.42 Total: -42.49 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.40 Total: -26.13 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -4.67 Total: 13.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.53 -7.14 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932315320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.775 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds