Wall clock time and date at job start Tue Mar 31 2020 19:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00257 * 2 1 4 4 H 1.48507 * 109.46723 * 90.00586 * 3 2 1 5 5 H 1.48498 * 109.47322 * 210.00183 * 3 2 1 6 6 H 1.48498 * 109.47025 * 330.00605 * 3 2 1 7 7 C 1.37884 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99885 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00044 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00389 * 270.00223 * 10 9 7 12 12 O 1.21289 * 120.00320 * 184.73802 * 11 10 9 13 13 C 1.50702 * 119.99539 * 4.73698 * 11 10 9 14 14 C 1.53007 * 109.46858 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.53579 * 56.39377 * 14 13 11 16 16 C 1.54229 * 110.60549 * 179.40931 * 14 13 11 17 17 C 1.51314 * 103.55269 * 118.51620 * 16 14 13 18 18 O 1.21223 * 125.39515 * 179.97438 * 17 16 14 19 19 N 1.33882 * 109.20850 * 0.02562 * 17 16 14 20 20 C 1.33878 * 114.47550 * 359.97438 * 19 17 16 21 21 O 1.21228 * 125.39630 * 180.02562 * 20 19 17 22 22 C 1.40040 * 119.99772 * 89.99740 * 10 9 7 23 23 C 1.38844 * 120.04334 * 67.62986 * 22 10 9 24 24 C 1.38116 * 119.95388 * 179.72019 * 23 22 10 25 25 C 1.38474 * 120.04398 * 0.57769 * 24 23 22 26 26 F 1.35095 * 119.95421 * 179.70107 * 25 24 23 27 27 C 1.38475 * 120.09035 * 359.67676 * 25 24 23 28 28 C 1.38113 * 120.04299 * 0.04493 * 27 25 24 29 29 H 0.97001 * 119.99668 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47223 * 299.99404 * 9 7 2 31 31 H 1.08994 * 109.47280 * 59.99747 * 9 7 2 32 32 H 1.09000 * 109.47285 * 299.99979 * 13 11 10 33 33 H 1.08999 * 109.47285 * 60.00288 * 13 11 10 34 34 H 1.08997 * 110.60566 * 237.03676 * 16 14 13 35 35 H 1.08995 * 110.60616 * 0.02562 * 16 14 13 36 36 H 0.96999 * 122.75904 * 179.97438 * 19 17 16 37 37 H 1.08009 * 120.02140 * 359.97438 * 23 22 10 38 38 H 1.08002 * 119.97604 * 180.27593 * 24 23 22 39 39 H 1.07992 * 119.97850 * 180.02562 * 27 25 24 40 40 H 1.08000 * 120.02402 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4002 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2249 -3.2105 1.1662 12 8 4.7100 -4.3222 1.1680 13 6 3.8739 -2.5394 2.4690 14 6 4.2278 -3.4678 3.6326 15 1 5.2805 -3.7479 3.5917 16 6 3.8923 -2.7998 4.9815 17 6 2.8583 -3.7236 5.5873 18 8 2.3205 -3.5668 6.6623 19 7 2.6324 -4.7423 4.7485 20 6 3.3485 -4.6992 3.6181 21 8 3.2999 -5.5170 2.7245 22 6 4.2327 -3.2357 -1.2137 23 6 5.2640 -2.8196 -2.0450 24 6 5.4957 -3.4759 -3.2380 25 6 4.6927 -4.5407 -3.6108 26 9 4.9172 -5.1775 -4.7809 27 6 3.6603 -4.9539 -2.7856 28 6 3.4289 -4.3039 -1.5892 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6802 -0.8911 31 1 3.8752 -0.6805 0.8888 32 1 4.4360 -1.6102 2.5622 33 1 2.8060 -2.3216 2.4894 34 1 4.7780 -2.7476 5.6146 35 1 3.4728 -1.8062 4.8237 36 1 2.0018 -5.4530 4.9437 37 1 5.8873 -1.9858 -1.7570 38 1 6.3007 -3.1554 -3.8827 39 1 3.0354 -5.7848 -3.0780 40 1 2.6234 -4.6262 -0.9461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932315320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:48 Heat of formation + Delta-G solvation = -132.671455 kcal Electronic energy + Delta-G solvation = -28777.891410 eV Core-core repulsion = 24471.817121 eV Total energy + Delta-G solvation = -4306.074289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.88686 -42.83342 -41.32535 -39.71697 -39.14694 -36.92596 -36.65665 -34.61992 -34.42879 -32.16379 -31.27753 -29.81732 -28.85891 -26.20542 -24.69105 -23.90261 -23.66850 -22.64394 -21.76148 -20.22968 -19.08153 -18.96143 -18.71276 -18.08731 -17.90760 -17.49228 -17.31681 -17.03987 -16.56029 -16.38566 -15.98047 -15.72743 -15.44261 -15.16254 -14.93946 -14.81637 -14.58299 -14.51385 -14.20450 -13.95990 -13.84076 -13.63886 -13.44824 -13.23191 -12.91280 -12.87260 -12.42648 -12.17722 -12.13195 -11.95747 -11.69173 -11.67063 -11.36382 -11.01715 -10.78718 -10.64823 -10.10405 -10.04607 -9.16961 -8.25702 -6.34750 0.08690 0.24974 0.51703 1.45281 1.49180 1.57664 1.72631 1.73636 1.86515 2.17517 2.39547 2.57316 3.08927 3.17966 3.24590 3.25409 3.41451 3.77208 3.78714 3.89325 3.97021 4.24465 4.34618 4.42025 4.44490 4.53534 4.68072 4.83285 4.86645 4.88559 4.91102 4.99597 5.07499 5.09262 5.14177 5.39004 5.48765 5.64264 5.66582 6.00281 6.21520 6.32808 6.55608 6.71698 6.89490 7.26648 7.37515 8.90602 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.004870 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.408577 B = 5748.398027 C = 8073.342159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.018 3.982 3 Si 0.940 3.060 4 H -0.248 1.248 5 H -0.233 1.233 6 H -0.296 1.296 7 C -0.541 4.541 8 H 0.022 0.978 9 C 0.216 3.784 10 N -0.563 5.563 11 C 0.506 3.494 12 O -0.549 6.549 13 C -0.123 4.123 14 C -0.099 4.099 15 H 0.148 0.852 16 C -0.138 4.138 17 C 0.533 3.467 18 O -0.524 6.524 19 N -0.682 5.682 20 C 0.520 3.480 21 O -0.496 6.496 22 C 0.138 3.862 23 C -0.097 4.097 24 C -0.132 4.132 25 C 0.078 3.922 26 F -0.142 7.142 27 C -0.147 4.147 28 C -0.099 4.099 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.096 0.904 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.414 0.586 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.999 -0.841 4.396 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.172 1.172 5 H -0.156 1.156 6 H -0.223 1.223 7 C -0.579 4.579 8 H 0.041 0.959 9 C 0.096 3.904 10 N -0.292 5.292 11 C 0.296 3.704 12 O -0.426 6.426 13 C -0.162 4.162 14 C -0.121 4.121 15 H 0.166 0.834 16 C -0.177 4.177 17 C 0.324 3.676 18 O -0.399 6.399 19 N -0.347 5.347 20 C 0.308 3.692 21 O -0.366 6.366 22 C 0.047 3.953 23 C -0.117 4.117 24 C -0.151 4.151 25 C 0.059 3.941 26 F -0.121 7.121 27 C -0.166 4.166 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.114 0.886 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.253 0.747 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.927 -1.559 4.430 14.697 hybrid contribution -1.467 -0.310 -0.393 1.550 sum 12.460 -1.869 4.037 13.230 Atomic orbital electron populations 1.70076 1.08752 1.28378 1.51299 1.25842 0.95378 1.03313 0.93539 0.85830 0.79825 0.77784 0.80346 1.17215 1.15590 1.22258 1.21465 0.91420 0.92926 1.52137 0.95919 1.19853 0.92814 0.77920 0.99814 1.45642 1.64619 1.15664 1.03232 1.21123 0.77464 0.85647 0.86140 1.90748 1.44281 1.19888 1.87703 1.21720 1.05363 1.00492 0.88642 1.21902 1.02875 0.91797 0.95510 0.83445 1.22716 1.00409 1.00285 0.94244 1.21318 0.82157 0.81510 0.82646 1.90790 1.52999 1.74629 1.21479 1.44920 1.41543 1.27493 1.20762 1.21317 0.80129 0.87884 0.79876 1.90865 1.64734 1.43719 1.37285 1.17912 0.95091 0.94113 0.88231 1.21301 0.95856 1.00830 0.93670 1.21252 1.00970 0.95074 0.97824 1.17729 0.98122 0.95108 0.83176 1.91468 1.94248 1.81075 1.45282 1.21079 0.98977 1.02170 0.94363 1.21068 0.98278 0.96564 0.95993 0.92414 0.93539 0.91090 0.83047 0.88567 0.81800 0.83647 0.74715 0.82367 0.81165 0.83603 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.15 13.96 21.45 0.30 -53.85 16 2 C 0.02 0.91 5.47 84.66 0.46 1.37 16 3 Si 0.94 35.98 27.47 68.60 1.88 37.87 16 4 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.23 -7.74 6.54 99.48 0.65 -7.09 16 6 H -0.30 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -26.79 9.71 25.60 0.25 -26.54 16 8 H 0.02 1.34 8.06 -2.91 -0.02 1.32 16 9 C 0.22 8.13 3.95 85.63 0.34 8.47 16 10 N -0.56 -20.82 2.51 -635.25 -1.59 -22.42 16 11 C 0.51 17.80 7.20 87.66 0.63 18.43 16 12 O -0.55 -22.17 13.33 18.95 0.25 -21.91 16 13 C -0.12 -3.13 3.70 29.85 0.11 -3.02 16 14 C -0.10 -2.02 2.72 -10.93 -0.03 -2.05 16 15 H 0.15 2.53 8.03 -2.38 -0.02 2.52 16 16 C -0.14 -1.85 6.67 30.46 0.20 -1.65 16 17 C 0.53 11.56 8.55 87.99 0.75 12.31 16 18 O -0.52 -14.70 18.02 -2.85 -0.05 -14.75 16 19 N -0.68 -16.04 5.48 -427.79 -2.34 -18.38 16 20 C 0.52 14.81 7.71 87.99 0.68 15.49 16 21 O -0.50 -19.25 15.42 19.14 0.30 -18.96 16 22 C 0.14 5.07 4.76 38.12 0.18 5.25 16 23 C -0.10 -2.85 9.68 22.39 0.22 -2.63 16 24 C -0.13 -3.46 10.02 22.30 0.22 -3.24 16 25 C 0.08 2.32 7.30 22.38 0.16 2.48 16 26 F -0.14 -4.03 17.26 44.97 0.78 -3.26 16 27 C -0.15 -4.82 10.02 22.30 0.22 -4.60 16 28 C -0.10 -3.83 9.55 22.39 0.21 -3.62 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.05 1.70 6.91 -2.39 -0.02 1.68 16 31 H 0.07 2.19 5.90 -2.39 -0.01 2.18 16 32 H 0.15 2.58 7.26 -2.39 -0.02 2.56 16 33 H 0.10 2.91 7.91 -2.39 -0.02 2.89 16 34 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.15 1.57 7.74 -2.39 -0.02 1.55 16 36 H 0.41 8.99 8.96 -92.71 -0.83 8.16 16 37 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -76.98 350.65 4.36 -72.62 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.22 Total: 26.57 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 4.62 Total: 16.46 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -3.64 Total: -94.65 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: 0.50 Total: -55.62 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 1.88 Total: 37.87 kcal Total: -76.98 4.36 -72.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932315320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.047 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds