Wall clock time and date at job start Tue Mar 31 2020 18:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36019 * 117.00428 * 2 1 4 4 C 1.39256 * 120.39112 * 180.02562 * 3 2 1 5 5 C 1.38301 * 118.45751 * 180.02562 * 4 3 2 6 6 C 1.39086 * 119.15599 * 359.97438 * 5 4 3 7 7 N 1.39254 * 119.64747 * 179.97438 * 6 5 4 8 8 N 1.40099 * 120.00324 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00494 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99988 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99711 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00015 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46733 * 325.00143 * 12 11 9 14 14 C 1.50694 * 109.47115 * 204.99781 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53000 * 109.47145 * 84.99707 * 12 11 9 23 23 F 1.39903 * 109.47440 * 180.02562 * 22 12 11 24 24 F 1.39899 * 109.47255 * 300.00046 * 22 12 11 25 25 F 1.39900 * 109.47102 * 59.99912 * 22 12 11 26 26 N 1.32327 * 120.70495 * 0.25535 * 6 5 4 27 27 C 1.31998 * 121.67644 * 359.47722 * 26 6 5 28 28 H 1.08998 * 109.47171 * 59.99377 * 1 2 3 29 29 H 1.08993 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46989 * 299.99786 * 1 2 3 31 31 H 1.08001 * 120.77311 * 359.97438 * 4 3 2 32 32 H 1.08011 * 120.42124 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99928 * 0.02562 * 7 6 5 34 34 H 0.97005 * 119.99873 * 0.02562 * 8 7 6 35 35 H 0.97005 * 120.00104 * 359.97438 * 11 9 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08009 * 119.60933 * 180.26454 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0227 2.5469 0.0000 6 6 3.2097 3.6753 0.0006 7 7 3.7889 4.9417 0.0017 8 7 2.9770 6.0834 0.0017 9 6 3.5376 7.3091 0.0022 10 8 2.8329 8.2999 0.0027 11 7 4.8793 7.4364 0.0023 12 6 5.4887 8.7686 0.0034 13 1 4.8742 9.4497 -0.5854 14 6 6.8686 8.6903 -0.5971 15 1 7.2534 7.7429 -0.9445 16 6 7.6403 9.8281 -0.7021 17 7 7.1719 10.9818 -0.2786 18 14 9.3511 9.7309 -1.4459 19 1 9.9688 11.0814 -1.4448 20 1 10.1877 8.8028 -0.6435 21 1 9.2566 9.2315 -2.8412 22 6 5.5865 9.2834 1.4409 23 9 6.1680 10.5559 1.4420 24 9 4.3055 9.3561 1.9984 25 9 6.3751 8.4092 2.1967 26 7 1.8916 3.5584 0.0056 27 6 1.3004 2.3783 0.0000 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0431 0.4005 -0.0005 32 1 5.0982 2.6476 -0.0008 33 1 4.7546 5.0333 0.0017 34 1 2.0113 5.9918 0.0013 35 1 5.4415 6.6459 0.0023 36 1 7.7150 11.7821 -0.3521 37 1 0.2217 2.3218 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:16 Heat of formation + Delta-G solvation = -111.232324 kcal Electronic energy + Delta-G solvation = -28898.695727 eV Core-core repulsion = 24071.614330 eV Total energy + Delta-G solvation = -4827.081397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.36291 -46.01570 -45.62956 -40.84865 -39.59841 -38.41222 -35.90001 -34.78515 -32.65868 -32.59662 -31.57039 -28.55731 -28.03653 -27.47284 -24.61913 -23.71454 -22.77381 -22.02854 -20.24512 -19.10994 -18.62262 -18.13587 -17.22689 -16.84347 -16.71132 -16.64597 -16.08000 -16.02320 -15.39831 -14.99934 -14.79558 -14.65878 -14.48902 -14.18418 -14.03918 -13.57372 -13.30201 -12.94984 -12.93260 -12.56763 -12.41252 -12.30685 -12.21009 -12.19407 -12.00664 -11.84040 -11.31123 -11.18969 -10.90741 -10.83957 -10.46478 -9.96455 -9.87154 -9.74536 -9.66084 -9.03915 -8.77347 -8.38890 -7.24258 -6.27720 -4.52655 0.95102 1.22898 2.09912 3.00137 3.16922 3.21534 3.23306 3.39999 3.53373 3.70756 4.12877 4.22631 4.47799 4.55162 4.66926 4.71499 4.83939 4.88333 4.89524 5.15519 5.29115 5.39878 5.61740 5.75472 5.84288 5.84594 6.12249 6.18752 6.52093 6.75435 7.00342 7.03777 7.26075 7.45769 7.55043 7.59389 7.92416 8.42591 8.58557 8.97356 9.15817 10.63757 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002786 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.642168 B =10047.044405 C =10813.417109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.010 3.990 4 C -0.054 4.054 5 C -0.192 4.192 6 C 0.382 3.618 7 N -0.523 5.523 8 N -0.532 5.532 9 C 0.706 3.294 10 O -0.567 6.567 11 N -0.724 5.724 12 C 0.262 3.738 13 H 0.088 0.912 14 C -0.555 4.555 15 H 0.077 0.923 16 C 0.066 3.934 17 N -0.838 5.838 18 Si 0.916 3.084 19 H -0.283 1.283 20 H -0.273 1.273 21 H -0.273 1.273 22 C 0.416 3.584 23 F -0.136 7.136 24 F -0.216 7.216 25 F -0.210 7.210 26 N -0.513 5.513 27 C 0.075 3.925 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.432 0.568 34 H 0.437 0.563 35 H 0.389 0.611 36 H 0.270 0.730 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -19.030 0.062 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C -0.039 4.039 4 C -0.081 4.081 5 C -0.219 4.219 6 C 0.146 3.854 7 N -0.257 5.257 8 N -0.288 5.288 9 C 0.405 3.595 10 O -0.440 6.440 11 N -0.378 5.378 12 C 0.156 3.844 13 H 0.106 0.894 14 C -0.592 4.592 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.471 5.471 18 Si 0.743 3.257 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.198 1.198 22 C 0.359 3.641 23 F -0.117 7.117 24 F -0.198 7.198 25 F -0.192 7.192 26 N -0.232 5.232 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.276 0.724 34 H 0.282 0.718 35 H 0.223 0.777 36 H 0.080 0.920 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.070 -17.212 0.118 19.010 hybrid contribution 1.404 -0.934 0.027 1.687 sum -6.666 -18.146 0.146 19.332 Atomic orbital electron populations 1.23040 0.78549 1.03979 1.01356 1.86058 1.21095 1.25956 1.89825 1.19689 0.93065 0.85610 1.05576 1.20592 0.91575 0.97838 0.98066 1.21060 1.00959 0.90307 1.09529 1.18096 0.89068 0.83982 0.94301 1.43149 1.05069 0.95188 1.82305 1.44548 1.06890 0.95248 1.82130 1.15890 0.83421 0.81741 0.78421 1.91020 1.61256 1.33288 1.58423 1.45291 1.03785 1.10453 1.78291 1.19667 0.96754 0.80227 0.87795 0.89447 1.20804 0.98079 0.96139 1.44152 0.90528 1.25077 0.99592 0.95037 0.94643 1.70391 1.37504 0.99266 1.39903 0.86251 0.82266 0.77629 0.79572 1.20837 1.19814 1.19778 1.23154 0.71888 0.77494 0.91552 1.93406 1.83205 1.38984 1.96144 1.93079 1.41915 1.96467 1.88349 1.92985 1.75806 1.70723 1.79666 1.66899 1.09592 1.27540 1.19173 1.22492 0.99989 0.86115 0.99661 0.92666 0.88264 0.92663 0.83804 0.83777 0.72417 0.71817 0.77735 0.91959 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.82 101.05 0.99 1.13 16 2 O -0.32 -2.85 10.51 -19.80 -0.21 -3.06 16 3 C 0.01 0.10 6.71 -39.12 -0.26 -0.17 16 4 C -0.05 -0.49 10.12 -39.18 -0.40 -0.89 16 5 C -0.19 -1.83 9.93 -39.24 -0.39 -2.22 16 6 C 0.38 4.62 7.60 -154.85 -1.18 3.45 16 7 N -0.52 -6.77 6.43 31.16 0.20 -6.57 16 8 N -0.53 -8.54 6.29 27.63 0.17 -8.37 16 9 C 0.71 14.21 8.21 -86.92 -0.71 13.50 16 10 O -0.57 -13.64 15.75 5.29 0.08 -13.55 16 11 N -0.72 -14.49 4.95 -59.82 -0.30 -14.79 16 12 C 0.26 6.39 2.21 -69.09 -0.15 6.23 16 13 H 0.09 2.40 7.58 -51.93 -0.39 2.00 16 14 C -0.55 -13.74 8.47 -34.44 -0.29 -14.03 16 15 H 0.08 1.76 7.74 -52.49 -0.41 1.35 16 16 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 17 N -0.84 -22.60 9.50 55.43 0.53 -22.07 16 18 Si 0.92 19.63 29.54 -169.99 -5.02 14.61 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.42 10.57 2.81 37.16 0.10 10.68 16 23 F -0.14 -3.74 12.91 2.25 0.03 -3.71 16 24 F -0.22 -5.53 15.68 2.25 0.04 -5.50 16 25 F -0.21 -5.11 16.94 2.25 0.04 -5.07 16 26 N -0.51 -6.49 9.37 -12.28 -0.12 -6.61 16 27 C 0.08 0.78 10.21 -17.40 -0.18 0.60 16 28 H 0.05 0.25 7.67 -51.93 -0.40 -0.14 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.26 7.68 -51.93 -0.40 -0.14 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.43 4.83 6.70 -182.60 -1.22 3.61 16 34 H 0.44 6.86 8.05 -182.59 -1.47 5.39 16 35 H 0.39 6.53 6.46 -40.82 -0.26 6.26 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 37 H 0.16 1.23 6.30 -52.48 -0.33 0.90 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -31.91 331.20 -7.41 -39.31 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.29 Total: 10.50 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: -2.56 Total: 19.87 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.49 Total: -58.40 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.12 Total: -16.61 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 0.10 Total: -14.27 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.91 -7.41 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.921 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds