Wall clock time and date at job start Tue Mar 31 2020 18:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36019 * 117.00428 * 2 1 4 4 C 1.39256 * 120.39112 * 180.02562 * 3 2 1 5 5 C 1.38301 * 118.45751 * 180.02562 * 4 3 2 6 6 C 1.39086 * 119.15599 * 359.97438 * 5 4 3 7 7 N 1.39254 * 119.64747 * 179.97438 * 6 5 4 8 8 N 1.40099 * 120.00324 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00494 * 180.02562 * 8 7 6 10 10 O 1.21585 * 119.99988 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99711 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00015 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46733 * 325.00143 * 12 11 9 14 14 C 1.50694 * 109.47115 * 204.99781 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53000 * 109.47145 * 84.99707 * 12 11 9 23 23 F 1.39903 * 109.47440 * 180.02562 * 22 12 11 24 24 F 1.39899 * 109.47255 * 300.00046 * 22 12 11 25 25 F 1.39900 * 109.47102 * 59.99912 * 22 12 11 26 26 N 1.32327 * 120.70495 * 0.25535 * 6 5 4 27 27 C 1.31998 * 121.67644 * 359.47722 * 26 6 5 28 28 H 1.08998 * 109.47171 * 59.99377 * 1 2 3 29 29 H 1.08993 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46989 * 299.99786 * 1 2 3 31 31 H 1.08001 * 120.77311 * 359.97438 * 4 3 2 32 32 H 1.08011 * 120.42124 * 180.02562 * 5 4 3 33 33 H 0.97001 * 119.99928 * 0.02562 * 7 6 5 34 34 H 0.97005 * 119.99873 * 0.02562 * 8 7 6 35 35 H 0.97005 * 120.00104 * 359.97438 * 11 9 8 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08009 * 119.60933 * 180.26454 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 3.4367 1.2942 -0.0005 5 6 4.0227 2.5469 0.0000 6 6 3.2097 3.6753 0.0006 7 7 3.7889 4.9417 0.0017 8 7 2.9770 6.0834 0.0017 9 6 3.5376 7.3091 0.0022 10 8 2.8329 8.2999 0.0027 11 7 4.8793 7.4364 0.0023 12 6 5.4887 8.7686 0.0034 13 1 4.8742 9.4497 -0.5854 14 6 6.8686 8.6903 -0.5971 15 1 7.2534 7.7429 -0.9445 16 6 7.6403 9.8281 -0.7021 17 7 7.1719 10.9818 -0.2786 18 14 9.3511 9.7309 -1.4459 19 1 9.9688 11.0814 -1.4448 20 1 10.1877 8.8028 -0.6435 21 1 9.2566 9.2315 -2.8412 22 6 5.5865 9.2834 1.4409 23 9 6.1680 10.5559 1.4420 24 9 4.3055 9.3561 1.9984 25 9 6.3751 8.4092 2.1967 26 7 1.8916 3.5584 0.0056 27 6 1.3004 2.3783 0.0000 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0431 0.4005 -0.0005 32 1 5.0982 2.6476 -0.0008 33 1 4.7546 5.0333 0.0017 34 1 2.0113 5.9918 0.0013 35 1 5.4415 6.6459 0.0023 36 1 7.7150 11.7821 -0.3521 37 1 0.2217 2.3218 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932907592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:15 Heat of formation + Delta-G solvation = -133.813298 kcal Electronic energy + Delta-G solvation = -28899.674912 eV Core-core repulsion = 24071.614330 eV Total energy + Delta-G solvation = -4828.060581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.104 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.40476 -48.03974 -47.71382 -41.69855 -41.03000 -39.23049 -37.08672 -36.59650 -34.42024 -33.43592 -32.69523 -30.11545 -29.10956 -28.11777 -26.59105 -24.58674 -23.80825 -23.55005 -21.91487 -20.54803 -19.63917 -18.96701 -18.91240 -18.74345 -18.61332 -17.97125 -17.45344 -16.93906 -16.70799 -16.61304 -16.30139 -15.95681 -15.42370 -15.17503 -15.04572 -14.94361 -14.87748 -14.55257 -14.44619 -14.29467 -14.27828 -14.01803 -13.87278 -13.67132 -13.16553 -12.98353 -12.76138 -12.67476 -12.59423 -12.22787 -12.08932 -11.61378 -11.57304 -10.73197 -10.67163 -10.48756 -10.30541 -9.92124 -8.23773 -8.19657 -6.51468 0.20405 0.42593 0.94783 1.49472 1.51586 1.59971 1.90434 1.99151 2.38602 2.42911 2.55412 2.85249 2.95708 3.22874 3.75574 3.77574 3.85106 3.92901 3.97025 4.15708 4.36653 4.45940 4.49985 4.67125 4.78437 4.83984 4.92590 5.05749 5.25739 5.30036 5.47423 5.56926 5.64540 6.04774 6.30613 6.38598 6.53176 6.90158 7.18055 7.28111 7.46386 8.72580 Molecular weight = 334.10amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002786 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.642168 B =10047.044405 C =10813.417109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.015 3.985 4 C -0.059 4.059 5 C -0.179 4.179 6 C 0.357 3.643 7 N -0.524 5.524 8 N -0.519 5.519 9 C 0.705 3.295 10 O -0.613 6.613 11 N -0.714 5.714 12 C 0.270 3.730 13 H 0.050 0.950 14 C -0.562 4.562 15 H 0.096 0.904 16 C 0.015 3.985 17 N -0.874 5.874 18 Si 0.985 3.015 19 H -0.287 1.287 20 H -0.264 1.264 21 H -0.263 1.263 22 C 0.412 3.588 23 F -0.150 7.150 24 F -0.220 7.220 25 F -0.202 7.202 26 N -0.538 5.538 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.439 0.561 34 H 0.439 0.561 35 H 0.406 0.594 36 H 0.269 0.731 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 -21.918 -0.369 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C -0.035 4.035 4 C -0.086 4.086 5 C -0.205 4.205 6 C 0.122 3.878 7 N -0.262 5.262 8 N -0.272 5.272 9 C 0.404 3.596 10 O -0.490 6.490 11 N -0.370 5.370 12 C 0.162 3.838 13 H 0.068 0.932 14 C -0.599 4.599 15 H 0.114 0.886 16 C -0.190 4.190 17 N -0.508 5.508 18 Si 0.808 3.192 19 H -0.213 1.213 20 H -0.188 1.188 21 H -0.187 1.187 22 C 0.355 3.645 23 F -0.131 7.131 24 F -0.202 7.202 25 F -0.184 7.184 26 N -0.258 5.258 27 C -0.097 4.097 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.284 0.716 34 H 0.285 0.715 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.053 -20.218 -0.312 21.415 hybrid contribution 0.939 -0.242 0.188 0.988 sum -6.115 -20.460 -0.124 21.354 Atomic orbital electron populations 1.23323 0.76744 1.05654 1.02086 1.86056 1.23026 1.25440 1.89494 1.19887 0.93637 0.85823 1.04117 1.20967 0.91661 0.98579 0.97344 1.21348 1.02178 0.89375 1.07591 1.18378 0.89505 0.83978 0.95929 1.43148 1.04927 0.94229 1.83856 1.44139 1.07244 0.95461 1.80320 1.15895 0.83063 0.82332 0.78342 1.90982 1.62171 1.35479 1.60374 1.44938 1.04039 1.09619 1.78390 1.19264 0.96529 0.81381 0.86604 0.93198 1.21181 0.97962 0.96985 1.43733 0.88591 1.26006 1.03513 0.94620 0.94874 1.70530 1.38950 0.99978 1.41318 0.85188 0.77420 0.77445 0.79136 1.21254 1.18834 1.18706 1.23353 0.71725 0.77168 0.92218 1.93380 1.83440 1.40010 1.96254 1.93068 1.42173 1.96473 1.88453 1.92984 1.75580 1.70329 1.79529 1.66836 1.10286 1.28899 1.19732 1.22792 1.01018 0.85788 1.00138 0.91906 0.86223 0.91954 0.81316 0.81009 0.71579 0.71534 0.75710 0.92124 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 113.37 1.11 1.25 16 2 O -0.33 -5.12 10.51 -93.76 -0.99 -6.11 16 3 C 0.01 0.26 6.71 22.57 0.15 0.41 16 4 C -0.06 -0.91 10.12 22.53 0.23 -0.68 16 5 C -0.18 -2.93 9.93 22.49 0.22 -2.71 16 6 C 0.36 8.11 7.60 132.99 1.01 9.12 16 7 N -0.52 -12.94 6.43 -55.34 -0.36 -13.29 16 8 N -0.52 -16.57 6.29 -184.75 -1.16 -17.73 16 9 C 0.70 28.71 8.21 179.05 1.47 30.18 16 10 O -0.61 -30.47 15.75 -3.98 -0.06 -30.53 16 11 N -0.71 -28.51 4.95 -461.42 -2.28 -30.79 16 12 C 0.27 13.36 2.21 44.24 0.10 13.45 16 13 H 0.05 2.86 7.58 -2.39 -0.02 2.84 16 14 C -0.56 -27.47 8.47 25.60 0.22 -27.26 16 15 H 0.10 4.21 7.74 -2.91 -0.02 4.19 16 16 C 0.02 0.78 5.20 84.66 0.44 1.22 16 17 N -0.87 -47.77 9.50 21.45 0.20 -47.57 16 18 Si 0.98 39.39 29.54 68.60 2.03 41.41 16 19 H -0.29 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 C 0.41 21.24 2.81 71.98 0.20 21.44 16 23 F -0.15 -8.38 12.91 44.97 0.58 -7.80 16 24 F -0.22 -11.48 15.68 44.97 0.70 -10.77 16 25 F -0.20 -9.75 16.94 44.97 0.76 -8.99 16 26 N -0.54 -13.11 9.37 -192.78 -1.81 -14.91 16 27 C 0.06 1.15 10.21 84.72 0.87 2.01 16 28 H 0.06 0.45 7.67 -2.39 -0.02 0.43 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.45 7.68 -2.38 -0.02 0.43 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.17 1.75 8.06 -2.90 -0.02 1.73 16 33 H 0.44 9.06 6.70 -213.32 -1.43 7.64 16 34 H 0.44 13.89 8.05 -213.32 -1.72 12.17 16 35 H 0.41 13.14 6.46 -92.70 -0.60 12.54 16 36 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.18 2.49 6.30 -2.91 -0.02 2.47 16 Total: -1.00 -69.43 331.20 1.08 -68.35 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -2.56 Total: 30.31 kcal Atomic # 6 Polarization: 42.42 SS G_CDS: 6.02 Total: 48.44 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -5.40 Total: -124.30 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.05 Total: -36.64 kcal Atomic # 9 Polarization: -29.62 SS G_CDS: 2.05 Total: -27.57 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.41 kcal Total: -69.43 1.08 -68.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.462 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds