Wall clock time and date at job start Tue Mar 31 2020 19:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00397 * 2 1 4 4 H 1.48501 * 109.47076 * 239.99715 * 3 2 1 5 5 H 1.48495 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47162 * 119.99750 * 3 2 1 7 7 C 1.38804 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00282 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46982 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00225 * 354.00667 * 11 10 9 13 13 N 1.34776 * 119.99816 * 174.28700 * 11 10 9 14 14 C 1.46506 * 120.00090 * 8.13454 * 13 11 10 15 15 C 1.50693 * 109.46992 * 97.30671 * 14 13 11 16 16 C 1.38381 * 119.92660 * 93.08855 * 15 14 13 17 17 C 1.38334 * 120.29407 * 179.97438 * 16 15 14 18 18 C 1.37979 * 120.14511 * 359.95567 * 17 16 15 19 19 C 1.39558 * 119.85297 * 0.02562 * 18 17 16 20 20 C 1.47841 * 120.14419 * 180.02562 * 19 18 17 21 21 N 1.34780 * 120.00231 * 359.97438 * 20 19 18 22 22 O 1.21560 * 120.00020 * 180.02562 * 20 19 18 23 23 C 1.37941 * 119.92983 * 272.80995 * 15 14 13 24 24 C 1.46498 * 120.00242 * 188.14164 * 13 11 10 25 25 C 1.53001 * 117.49533 * 16.20129 * 24 13 11 26 26 C 1.52998 * 117.49334 * 307.54709 * 24 13 11 27 27 H 0.97004 * 119.99212 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46619 * 60.00060 * 10 9 7 29 29 H 1.08999 * 109.47033 * 300.00288 * 10 9 7 30 30 H 1.09003 * 109.47316 * 217.31031 * 14 13 11 31 31 H 1.08999 * 109.46868 * 337.30800 * 14 13 11 32 32 H 1.08003 * 119.85451 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.93034 * 179.97438 * 17 16 15 34 34 H 1.08007 * 120.07508 * 180.02562 * 18 17 16 35 35 H 0.97002 * 119.99999 * 0.02562 * 21 20 19 36 36 H 0.96999 * 119.99769 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.07180 * 0.02562 * 23 15 14 38 38 H 1.08996 * 115.55184 * 161.87779 * 24 13 11 39 39 H 1.08991 * 117.50248 * 0.02562 * 25 24 13 40 40 H 1.09006 * 117.49261 * 145.02689 * 25 24 13 41 41 H 1.09005 * 117.49784 * 214.97934 * 26 24 13 42 42 H 1.09000 * 117.50318 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9870 -5.3028 0.0012 12 8 0.7962 -5.5043 0.1112 13 7 2.8383 -6.3413 -0.1149 14 6 4.2844 -6.1125 -0.0624 15 6 4.7860 -6.3862 1.3320 16 6 5.2676 -7.6418 1.6583 17 6 5.7304 -7.9013 2.9358 18 6 5.7153 -6.9080 3.8934 19 6 5.2312 -5.6394 3.5708 20 6 5.2126 -4.5702 4.5917 21 7 5.6632 -4.8197 5.8372 22 8 4.7899 -3.4663 4.3080 23 6 4.7693 -5.3831 2.2787 24 6 2.3175 -7.6988 -0.2937 25 6 0.8547 -7.8441 -0.7179 26 6 1.2759 -8.1939 0.7116 27 1 -0.4849 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8906 29 1 3.1243 -3.7315 -0.8894 30 1 4.7835 -6.7792 -0.7656 31 1 4.4983 -5.0774 -0.3288 32 1 5.2823 -8.4226 0.9122 33 1 6.1046 -8.8835 3.1842 34 1 6.0772 -7.1118 4.8904 35 1 6.0001 -5.7006 6.0637 36 1 5.6513 -4.1180 6.5068 37 1 4.3970 -4.4025 2.0216 38 1 3.0289 -8.4279 -0.6816 39 1 0.2799 -6.9297 -0.8642 40 1 0.6036 -8.6692 -1.3846 41 1 1.3016 -9.2488 0.9848 42 1 0.9783 -7.5097 1.5062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273059725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:46 Heat of formation + Delta-G solvation = -4.575052 kcal Electronic energy + Delta-G solvation = -26170.554308 eV Core-core repulsion = 22436.247872 eV Total energy + Delta-G solvation = -3734.306436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53465 -39.84794 -38.37956 -36.14710 -34.89640 -33.86042 -32.35379 -31.30765 -31.17903 -29.00475 -26.19834 -25.41832 -24.36577 -22.67557 -22.18711 -22.10606 -20.51072 -19.00624 -18.33789 -17.51730 -16.95013 -16.63000 -16.33919 -16.08396 -15.57572 -14.88958 -14.82518 -14.73214 -14.72836 -14.30731 -14.04355 -13.82303 -13.40792 -13.20800 -13.02643 -12.55853 -12.44724 -12.35262 -12.14552 -11.89722 -11.48054 -11.07560 -10.96952 -10.95257 -10.83402 -10.69653 -10.25835 -10.15856 -9.87070 -9.75550 -9.18327 -9.17251 -9.02957 -8.98168 -8.27726 -8.17259 -6.43083 -6.14571 -3.84559 0.62833 1.06749 2.64107 2.93741 2.98210 3.29604 3.30514 3.32264 3.35052 3.58066 3.74056 4.05053 4.27291 4.43399 4.52474 4.57053 4.73429 4.85558 4.93786 4.97747 5.02615 5.20697 5.21315 5.23255 5.30013 5.42201 5.55213 5.60264 5.70061 5.71781 5.86517 5.91036 6.02385 6.06798 6.16462 6.24716 6.29817 6.53580 6.56657 6.66328 6.89952 7.13247 7.51065 7.67392 8.12008 8.42722 8.55333 9.31288 10.92919 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004485 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.340756 B = 6241.543540 C = 8638.414944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.156 4.156 11 C 0.537 3.463 12 O -0.503 6.503 13 N -0.590 5.590 14 C 0.151 3.849 15 C -0.110 4.110 16 C -0.075 4.075 17 C -0.130 4.130 18 C -0.086 4.086 19 C -0.136 4.136 20 C 0.557 3.443 21 N -0.854 5.854 22 O -0.522 6.522 23 C -0.043 4.043 24 C 0.074 3.926 25 C -0.190 4.190 26 C -0.186 4.186 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.398 0.602 36 H 0.405 0.595 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.339 -20.418 5.990 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.681 4.681 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.307 4.307 11 C 0.326 3.674 12 O -0.377 6.377 13 N -0.323 5.323 14 C 0.027 3.973 15 C -0.111 4.111 16 C -0.094 4.094 17 C -0.148 4.148 18 C -0.105 4.105 19 C -0.140 4.140 20 C 0.342 3.658 21 N -0.419 5.419 22 O -0.398 6.398 23 C -0.062 4.062 24 C -0.031 4.031 25 C -0.228 4.228 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.227 0.773 36 H 0.236 0.764 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.081 -19.915 5.664 24.491 hybrid contribution 2.289 0.968 0.630 2.564 sum 15.370 -18.948 6.294 25.196 Atomic orbital electron populations 1.70011 1.05931 1.27467 1.47042 1.24962 0.94997 0.98945 0.94510 0.86251 0.79291 0.81297 0.78877 1.19950 1.20848 1.19819 1.22812 0.94877 0.91568 1.58813 0.90967 1.85318 1.04736 0.96336 1.96661 1.23693 1.06810 0.95462 1.04700 1.20387 0.86127 0.86062 0.74863 1.90558 1.15779 1.84788 1.46616 1.47372 1.05458 1.05715 1.73728 1.20492 0.80441 1.03956 0.92367 1.20272 0.99943 0.93911 0.97006 1.21224 0.95725 0.95852 0.96583 1.21037 1.01211 0.99228 0.93340 1.21259 0.97688 0.92217 0.99312 1.19879 1.04964 0.94185 0.94939 1.18343 0.77105 0.87783 0.82526 1.43732 1.67857 1.17440 1.12868 1.90935 1.45012 1.23833 1.80005 1.21393 0.93670 1.00023 0.91142 1.21557 0.91955 0.84588 1.04969 1.23784 0.96864 1.05071 0.97047 1.23220 1.04058 1.00868 0.94368 0.92214 0.89100 0.89302 0.89355 0.88271 0.85562 0.85385 0.85778 0.77273 0.76400 0.84188 0.85969 0.84564 0.89516 0.89239 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.84 13.22 55.49 0.73 -26.11 16 2 C 0.07 2.20 5.49 -17.43 -0.10 2.11 16 3 Si 0.92 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.65 9.50 30.94 0.29 -15.35 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 10 C -0.16 -3.27 4.56 36.00 0.16 -3.11 16 11 C 0.54 10.25 7.46 -10.99 -0.08 10.17 16 12 O -0.50 -11.15 11.63 5.56 0.06 -11.09 16 13 N -0.59 -8.36 2.83 -167.47 -0.47 -8.83 16 14 C 0.15 1.65 5.60 -5.19 -0.03 1.62 16 15 C -0.11 -1.21 5.43 -104.68 -0.57 -1.78 16 16 C -0.08 -0.63 9.68 -39.49 -0.38 -1.02 16 17 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 18 C -0.09 -0.71 9.54 -39.18 -0.37 -1.09 16 19 C -0.14 -1.64 5.87 -104.97 -0.62 -2.26 16 20 C 0.56 7.50 8.05 -12.33 -0.10 7.40 16 21 N -0.85 -7.07 8.82 30.53 0.27 -6.80 16 22 O -0.52 -9.90 17.18 5.31 0.09 -9.80 16 23 C -0.04 -0.58 9.25 -39.18 -0.36 -0.95 16 24 C 0.07 0.91 6.61 -67.93 -0.45 0.46 16 25 C -0.19 -2.64 9.63 -26.70 -0.26 -2.90 16 26 C -0.19 -2.46 9.87 -26.70 -0.26 -2.72 16 27 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.09 1.86 5.98 -51.92 -0.31 1.55 16 29 H 0.09 1.70 7.47 -51.92 -0.39 1.31 16 30 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.10 1.14 6.06 -51.93 -0.31 0.82 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.12 0.61 6.41 -52.48 -0.34 0.27 16 35 H 0.40 1.87 6.86 -40.82 -0.28 1.59 16 36 H 0.40 2.96 8.93 -40.82 -0.36 2.60 16 37 H 0.14 2.27 5.51 -52.49 -0.29 1.98 16 38 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.14 2.44 5.30 -51.96 -0.28 2.16 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.60 7.54 -51.93 -0.39 1.21 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -38.39 366.48 -9.57 -47.96 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.03 Total: 6.53 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.52 Total: -10.79 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.53 Total: -41.74 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.16 Total: -20.89 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.39 -9.57 -47.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273059725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.388 kcal (2) G-P(sol) polarization free energy of solvation -38.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds