Wall clock time and date at job start Tue Mar 31 2020 19:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86800 * 120.00397 * 2 1 4 4 H 1.48501 * 109.47076 * 239.99715 * 3 2 1 5 5 H 1.48495 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47162 * 119.99750 * 3 2 1 7 7 C 1.38804 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00282 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46982 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00225 * 354.00667 * 11 10 9 13 13 N 1.34776 * 119.99816 * 174.28700 * 11 10 9 14 14 C 1.46506 * 120.00090 * 8.13454 * 13 11 10 15 15 C 1.50693 * 109.46992 * 97.30671 * 14 13 11 16 16 C 1.38381 * 119.92660 * 93.08855 * 15 14 13 17 17 C 1.38334 * 120.29407 * 179.97438 * 16 15 14 18 18 C 1.37979 * 120.14511 * 359.95567 * 17 16 15 19 19 C 1.39558 * 119.85297 * 0.02562 * 18 17 16 20 20 C 1.47841 * 120.14419 * 180.02562 * 19 18 17 21 21 N 1.34780 * 120.00231 * 359.97438 * 20 19 18 22 22 O 1.21560 * 120.00020 * 180.02562 * 20 19 18 23 23 C 1.37941 * 119.92983 * 272.80995 * 15 14 13 24 24 C 1.46498 * 120.00242 * 188.14164 * 13 11 10 25 25 C 1.53001 * 117.49533 * 16.20129 * 24 13 11 26 26 C 1.52998 * 117.49334 * 307.54709 * 24 13 11 27 27 H 0.97004 * 119.99212 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46619 * 60.00060 * 10 9 7 29 29 H 1.08999 * 109.47033 * 300.00288 * 10 9 7 30 30 H 1.09003 * 109.47316 * 217.31031 * 14 13 11 31 31 H 1.08999 * 109.46868 * 337.30800 * 14 13 11 32 32 H 1.08003 * 119.85451 * 359.97438 * 16 15 14 33 33 H 1.08004 * 119.93034 * 179.97438 * 17 16 15 34 34 H 1.08007 * 120.07508 * 180.02562 * 18 17 16 35 35 H 0.97002 * 119.99999 * 0.02562 * 21 20 19 36 36 H 0.96999 * 119.99769 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.07180 * 0.02562 * 23 15 14 38 38 H 1.08996 * 115.55184 * 161.87779 * 24 13 11 39 39 H 1.08991 * 117.50248 * 0.02562 * 25 24 13 40 40 H 1.09006 * 117.49261 * 145.02689 * 25 24 13 41 41 H 1.09005 * 117.49784 * 214.97934 * 26 24 13 42 42 H 1.09000 * 117.50318 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9870 -5.3028 0.0012 12 8 0.7962 -5.5043 0.1112 13 7 2.8383 -6.3413 -0.1149 14 6 4.2844 -6.1125 -0.0624 15 6 4.7860 -6.3862 1.3320 16 6 5.2676 -7.6418 1.6583 17 6 5.7304 -7.9013 2.9358 18 6 5.7153 -6.9080 3.8934 19 6 5.2312 -5.6394 3.5708 20 6 5.2126 -4.5702 4.5917 21 7 5.6632 -4.8197 5.8372 22 8 4.7899 -3.4663 4.3080 23 6 4.7693 -5.3831 2.2787 24 6 2.3175 -7.6988 -0.2937 25 6 0.8547 -7.8441 -0.7179 26 6 1.2759 -8.1939 0.7116 27 1 -0.4849 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8906 29 1 3.1243 -3.7315 -0.8894 30 1 4.7835 -6.7792 -0.7656 31 1 4.4983 -5.0774 -0.3288 32 1 5.2823 -8.4226 0.9122 33 1 6.1046 -8.8835 3.1842 34 1 6.0772 -7.1118 4.8904 35 1 6.0001 -5.7006 6.0637 36 1 5.6513 -4.1180 6.5068 37 1 4.3970 -4.4025 2.0216 38 1 3.0289 -8.4279 -0.6816 39 1 0.2799 -6.9297 -0.8642 40 1 0.6036 -8.6692 -1.3846 41 1 1.3016 -9.2488 0.9848 42 1 0.9783 -7.5097 1.5062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273059725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:45 Heat of formation + Delta-G solvation = -33.191458 kcal Electronic energy + Delta-G solvation = -26171.795208 eV Core-core repulsion = 22436.247872 eV Total energy + Delta-G solvation = -3735.547336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61762 -40.97620 -39.33867 -37.41622 -35.93865 -34.84913 -34.62763 -32.19815 -31.99390 -30.60645 -27.72082 -27.10696 -25.22497 -23.87108 -23.23790 -22.89419 -21.41153 -20.52747 -19.51700 -19.08223 -18.00363 -17.80138 -17.41983 -17.05649 -16.92341 -16.69569 -16.00656 -15.90494 -15.83836 -15.64985 -15.40677 -14.78261 -14.70573 -14.56741 -14.27302 -14.03697 -13.78732 -13.32707 -13.20853 -13.10078 -12.92084 -12.74318 -12.68214 -12.47102 -12.04269 -11.90213 -11.76073 -11.27244 -11.21154 -11.17174 -10.81559 -10.54733 -10.35530 -9.93128 -9.88511 -9.44672 -8.70657 -8.38844 -6.16632 -0.15574 0.29238 1.20301 1.38119 1.39754 1.45526 1.50863 1.78785 2.08603 2.23239 2.47801 2.86178 2.94911 3.03277 3.22339 3.56908 3.71348 3.80558 3.86769 3.99710 4.03362 4.14009 4.16033 4.18076 4.28030 4.32060 4.41952 4.59779 4.64712 4.73115 4.86513 4.88012 5.00703 5.13017 5.30883 5.36467 5.40296 5.41943 5.50101 5.78526 5.79593 5.94011 6.14917 6.21914 6.37924 7.02248 7.11622 7.25140 8.70446 Molecular weight = 334.11amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.004485 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.340756 B = 6241.543540 C = 8638.414944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.075 0.925 9 S -0.142 6.142 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.543 6.543 13 N -0.576 5.576 14 C 0.143 3.857 15 C -0.120 4.120 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.162 4.162 20 C 0.549 3.451 21 N -0.826 5.826 22 O -0.597 6.597 23 C -0.078 4.078 24 C 0.085 3.915 25 C -0.207 4.207 26 C -0.185 4.185 27 H 0.272 0.728 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.419 0.581 36 H 0.411 0.589 37 H 0.093 0.907 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 -24.473 6.046 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.696 4.696 8 H 0.093 0.907 9 S 0.086 5.914 10 C -0.280 4.280 11 C 0.321 3.679 12 O -0.421 6.421 13 N -0.307 5.307 14 C 0.022 3.978 15 C -0.121 4.121 16 C -0.081 4.081 17 C -0.138 4.138 18 C -0.092 4.092 19 C -0.165 4.165 20 C 0.336 3.664 21 N -0.391 5.391 22 O -0.479 6.479 23 C -0.098 4.098 24 C -0.018 4.018 25 C -0.245 4.245 26 C -0.223 4.223 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.243 0.757 37 H 0.111 0.889 38 H 0.198 0.802 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.864 -24.048 5.759 29.931 hybrid contribution 1.217 2.037 0.699 2.473 sum 18.081 -22.011 6.457 29.208 Atomic orbital electron populations 1.70168 1.07818 1.28695 1.47861 1.26083 0.96000 1.03129 0.93582 0.85067 0.77986 0.75947 0.79407 1.18144 1.19644 1.19504 1.23116 0.95056 0.92274 1.59175 0.90702 1.85359 1.10154 0.98960 1.96955 1.23496 1.03591 0.95516 1.05426 1.20053 0.86108 0.86360 0.75425 1.90580 1.17496 1.85249 1.48773 1.47349 1.06384 1.05478 1.71512 1.20825 0.78373 1.04628 0.93977 1.20226 1.01105 0.94687 0.96063 1.21679 0.93418 0.94952 0.98016 1.21585 0.99344 1.00500 0.92396 1.21682 0.95690 0.90346 1.01486 1.19894 1.07061 0.95574 0.93978 1.18815 0.76299 0.87273 0.84053 1.43508 1.65696 1.18690 1.11227 1.90892 1.48750 1.26748 1.81466 1.21253 0.96153 0.99153 0.93252 1.22101 0.92249 0.83718 1.03699 1.23646 0.98104 1.04219 0.98492 1.23171 1.04497 1.01896 0.92743 0.91879 0.89254 0.87592 0.84326 0.89858 0.81548 0.81053 0.82043 0.74799 0.75722 0.88918 0.80213 0.89335 0.86372 0.85469 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.64 13.22 21.65 0.29 -58.35 16 2 C 0.02 1.03 5.49 84.86 0.47 1.50 16 3 Si 0.99 46.93 29.55 68.60 2.03 48.96 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.55 -33.98 9.50 67.96 0.65 -33.34 16 8 H 0.07 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.14 -8.47 20.58 -56.49 -1.16 -9.63 16 10 C -0.13 -5.82 4.56 71.24 0.32 -5.50 16 11 C 0.53 21.46 7.46 87.66 0.65 22.11 16 12 O -0.54 -25.99 11.63 -3.02 -0.04 -26.02 16 13 N -0.58 -15.75 2.83 -802.16 -2.27 -18.02 16 14 C 0.14 2.85 5.60 85.63 0.48 3.33 16 15 C -0.12 -2.40 5.43 -19.90 -0.11 -2.51 16 16 C -0.06 -0.71 9.68 22.33 0.22 -0.50 16 17 C -0.12 -1.10 10.03 22.23 0.22 -0.88 16 18 C -0.07 -0.95 9.54 22.53 0.21 -0.73 16 19 C -0.16 -3.87 5.87 -20.09 -0.12 -3.99 16 20 C 0.55 15.49 8.05 86.78 0.70 16.19 16 21 N -0.83 -13.04 8.82 -175.60 -1.55 -14.59 16 22 O -0.60 -24.90 17.18 -3.91 -0.07 -24.97 16 23 C -0.08 -2.22 9.25 22.53 0.21 -2.02 16 24 C 0.09 1.82 6.61 44.99 0.30 2.11 16 25 C -0.21 -5.53 9.63 30.62 0.29 -5.24 16 26 C -0.18 -4.54 9.87 30.62 0.30 -4.23 16 27 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 28 H 0.09 4.06 5.98 -2.39 -0.01 4.05 16 29 H 0.11 4.30 7.47 -2.40 -0.02 4.28 16 30 H 0.14 1.40 8.05 -2.39 -0.02 1.38 16 31 H 0.08 1.92 6.06 -2.39 -0.01 1.90 16 32 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.16 0.73 6.41 -2.91 -0.02 0.72 16 35 H 0.42 2.82 6.86 -92.71 -0.64 2.18 16 36 H 0.41 5.86 8.93 -92.71 -0.83 5.03 16 37 H 0.09 3.45 5.51 -2.91 -0.02 3.43 16 38 H 0.18 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 3.35 5.30 -2.82 -0.01 3.33 16 40 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 41 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.05 1.82 7.54 -2.39 -0.02 1.80 16 Total: -1.00 -96.83 366.48 1.65 -95.18 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.38 Total: 21.15 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.80 Total: -13.69 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.53 Total: -90.96 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.10 Total: -50.99 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -96.83 1.65 -95.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273059725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.985 kcal (2) G-P(sol) polarization free energy of solvation -96.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds