Wall clock time and date at job start Tue Mar 31 2020 19:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47153 * 60.13497 * 3 2 1 5 5 N 1.46504 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99670 * 269.99991 * 5 4 3 7 7 C 1.50705 * 109.46763 * 269.99594 * 6 5 4 8 8 H 1.07994 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99868 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47137 * 90.00195 * 11 9 7 13 13 H 1.48507 * 109.47005 * 209.99913 * 11 9 7 14 14 H 1.48500 * 109.47390 * 330.00162 * 11 9 7 15 15 C 1.34768 * 120.00349 * 89.99746 * 5 4 3 16 16 O 1.21279 * 120.00243 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99969 * 0.02562 * 15 5 4 18 18 N 1.46499 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.35605 * 119.26461 * 90.00341 * 18 17 15 20 20 C 1.35092 * 120.69955 * 179.71991 * 19 18 17 21 21 C 1.41482 * 119.24492 * 0.02562 * 20 19 18 22 22 O 1.22246 * 120.67990 * 180.02562 * 21 20 19 23 23 C 1.41486 * 118.63755 * 359.97438 * 21 20 19 24 24 N 1.48010 * 120.37301 * 179.97438 * 23 21 20 25 25 O 1.21795 * 119.99897 * 180.02562 * 24 23 21 26 26 O 1.21797 * 120.00223 * 359.97438 * 24 23 21 27 27 C 1.35085 * 119.24778 * 0.02562 * 23 21 20 28 28 H 1.08998 * 109.47908 * 300.13149 * 3 2 1 29 29 H 1.09005 * 109.46985 * 180.12837 * 3 2 1 30 30 H 1.09001 * 109.47087 * 59.99620 * 4 3 2 31 31 H 1.08997 * 109.46924 * 299.99393 * 4 3 2 32 32 H 1.09001 * 109.47191 * 29.99709 * 6 5 4 33 33 H 1.09002 * 109.47069 * 150.00191 * 6 5 4 34 34 H 0.97002 * 119.99660 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46874 * 59.99795 * 17 15 5 36 36 H 1.09000 * 109.46706 * 300.00404 * 17 15 5 37 37 H 1.07999 * 119.65027 * 359.73953 * 19 18 17 38 38 H 1.07995 * 120.37318 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.65257 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1183 -0.7174 -1.2509 5 7 4.5833 -0.7162 -1.2513 6 6 5.3147 0.3846 -1.8834 7 6 5.5659 0.0542 -3.3322 8 1 5.2154 -0.8818 -3.7412 9 6 6.2432 0.9470 -4.1354 10 7 6.4619 0.6590 -5.3998 11 14 6.8501 2.5657 -3.4277 12 1 8.2237 2.3878 -2.8921 13 1 6.8649 3.5981 -4.4951 14 1 5.9443 2.9981 -2.3333 15 6 5.2582 -1.7277 -0.6701 16 8 6.4710 -1.7264 -0.6699 17 6 4.5058 -2.8603 -0.0202 18 7 5.4587 -3.8253 0.5338 19 6 5.8896 -3.6732 1.8105 20 6 6.7638 -4.5491 2.3524 21 6 7.2295 -5.6332 1.5718 22 8 8.0204 -6.4416 2.0359 23 6 6.7603 -5.7632 0.2433 24 7 7.2228 -6.8825 -0.6076 25 8 6.8148 -6.9875 -1.7504 26 8 8.0120 -7.6979 -0.1653 27 6 5.8863 -4.8536 -0.2399 28 1 2.9716 -0.5150 0.8887 29 1 2.9708 1.0285 0.0023 30 1 2.7547 -0.2017 -2.1397 31 1 2.7555 -1.7452 -1.2533 32 1 4.7249 1.2987 -1.8161 33 1 6.2672 0.5283 -1.3732 34 1 6.9381 1.2873 -5.9650 35 1 3.8797 -3.3541 -0.7634 36 1 3.8786 -2.4678 0.7802 37 1 5.5299 -2.8431 2.4005 38 1 7.1031 -4.4231 3.3699 39 1 5.5236 -4.9467 -1.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319591147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:46 Heat of formation + Delta-G solvation = 9.195374 kcal Electronic energy + Delta-G solvation = -28137.616274 eV Core-core repulsion = 23857.613754 eV Total energy + Delta-G solvation = -4280.002520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33029 -41.35412 -39.79598 -38.27817 -37.27551 -36.19017 -35.83982 -33.56166 -32.96717 -32.72233 -31.44403 -29.48395 -27.60423 -26.63493 -24.55361 -23.88036 -23.38746 -22.60371 -19.83576 -19.16618 -18.81821 -18.20812 -17.74343 -17.52298 -17.40291 -17.26879 -17.09338 -16.62966 -15.81139 -15.35625 -15.16106 -15.11124 -14.82193 -14.34701 -14.10167 -13.90503 -13.83255 -13.27255 -13.13358 -12.89194 -12.87524 -12.80592 -12.54469 -12.21903 -11.92772 -11.43117 -11.33102 -11.27134 -11.14602 -10.86503 -10.80717 -10.56244 -10.48947 -10.01523 -9.84100 -9.78135 -8.84519 -8.72281 -8.43118 -6.33519 -4.36528 -0.09968 0.73095 1.19200 1.37558 1.99271 2.29627 2.45877 2.48240 2.93214 3.08820 3.13773 3.18710 3.21492 3.61393 3.67550 3.91229 4.03486 4.15129 4.17489 4.24274 4.31374 4.40812 4.56401 4.62556 4.89618 4.93005 4.98908 5.13153 5.32234 5.57422 5.60755 5.82369 6.05357 6.17358 6.49041 6.50544 6.67066 7.22224 7.27038 7.47350 7.56251 7.89947 8.02702 8.22799 8.66920 9.23688 10.79141 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.003668 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.597706 B = 7631.931853 C = 9317.808755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.210 3.790 3 C -0.049 4.049 4 C 0.109 3.891 5 N -0.579 5.579 6 C 0.216 3.784 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.888 5.888 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.487 3.513 16 O -0.511 6.511 17 C 0.059 3.941 18 N -0.441 5.441 19 C 0.137 3.863 20 C -0.245 4.245 21 C 0.406 3.594 22 O -0.473 6.473 23 C -0.221 4.221 24 N 0.056 4.944 25 O -0.197 6.197 26 O -0.130 6.130 27 C 0.256 3.744 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.268 0.732 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 -2.400 15.125 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.109 4.109 3 C -0.091 4.091 4 C -0.017 4.017 5 N -0.311 5.311 6 C 0.096 3.904 7 C -0.581 4.581 8 H 0.095 0.905 9 C -0.127 4.127 10 N -0.525 5.525 11 Si 0.701 3.299 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.271 3.729 16 O -0.386 6.386 17 C -0.066 4.066 18 N -0.126 5.126 19 C 0.014 3.986 20 C -0.269 4.269 21 C 0.292 3.708 22 O -0.354 6.354 23 C -0.314 4.314 24 N 0.572 4.428 25 O -0.401 6.401 26 O -0.352 6.352 27 C 0.120 3.880 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.042 -2.016 15.490 18.570 hybrid contribution 0.800 0.898 -0.249 1.228 sum -9.242 -1.119 15.242 17.860 Atomic orbital electron populations 1.81275 1.12949 1.08543 1.08136 1.28936 0.94951 0.93451 0.93558 1.19839 0.81815 1.05994 1.01422 1.21500 0.81117 1.01373 0.97738 1.47909 1.05298 1.23455 1.54398 1.19850 0.92538 0.83693 0.94295 1.21194 1.38402 1.06385 0.92127 0.90547 1.24847 0.94958 0.98205 0.94669 1.69870 1.40414 1.36583 1.05615 0.86894 0.80181 0.83652 0.79157 1.19828 1.20857 1.19009 1.20280 0.88494 0.83602 0.80549 1.90840 1.13057 1.76553 1.58156 1.22584 0.90881 0.90627 1.02493 1.42821 1.37465 1.21332 1.10944 1.22073 0.94300 0.98889 0.83325 1.22455 1.02762 0.98040 1.03628 1.16763 0.82678 0.86568 0.84791 1.90954 1.29813 1.41525 1.73108 1.22330 1.13361 0.97896 0.97845 1.42760 0.99144 1.00594 1.00310 1.94527 1.61328 1.81245 1.03001 1.94609 1.27936 1.35400 1.77262 1.21635 0.87329 0.82614 0.96406 0.87683 0.86277 0.87568 0.90149 0.94436 0.94073 0.92181 0.84724 0.84786 0.80323 0.81402 0.79089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.70 18.54 42.15 0.78 -3.92 16 2 C 0.21 1.55 15.43 -20.76 -0.32 1.23 16 3 C -0.05 -0.22 6.03 -29.52 -0.18 -0.40 16 4 C 0.11 0.79 5.17 -4.04 -0.02 0.77 16 5 N -0.58 -7.02 2.46 -175.05 -0.43 -7.45 16 6 C 0.22 3.87 4.23 -5.19 -0.02 3.85 16 7 C -0.54 -12.93 9.94 -34.44 -0.34 -13.27 16 8 H 0.08 2.02 8.06 -52.49 -0.42 1.60 16 9 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -24.90 13.96 55.43 0.77 -24.13 16 11 Si 0.87 18.81 27.47 -169.99 -4.67 14.14 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 14 H -0.27 -5.11 6.54 56.52 0.37 -4.74 16 15 C 0.49 5.64 7.74 -10.99 -0.09 5.55 16 16 O -0.51 -8.83 16.01 5.56 0.09 -8.74 16 17 C 0.06 0.30 4.59 -5.19 -0.02 0.27 16 18 N -0.44 -3.27 2.09 -118.70 -0.25 -3.52 16 19 C 0.14 0.87 10.25 -17.00 -0.17 0.69 16 20 C -0.25 -2.26 10.01 -39.47 -0.39 -2.66 16 21 C 0.41 5.82 6.76 -37.11 -0.25 5.57 16 22 O -0.47 -8.66 16.15 -16.69 -0.27 -8.93 16 23 C -0.22 -3.10 6.86 -79.84 -0.55 -3.65 16 24 N 0.06 0.96 4.45 34.02 0.15 1.12 16 25 O -0.20 -3.31 18.43 -29.46 -0.54 -3.86 16 26 O -0.13 -2.48 17.51 -36.28 -0.64 -3.12 16 27 C 0.26 2.60 9.79 -17.01 -0.17 2.44 16 28 H 0.11 0.13 7.22 -51.93 -0.38 -0.24 16 29 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.08 0.34 6.44 -51.93 -0.33 0.00 16 32 H 0.04 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.04 0.82 6.85 -51.93 -0.36 0.46 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.13 0.35 7.25 -51.93 -0.38 -0.02 16 36 H 0.13 0.04 7.04 -51.93 -0.37 -0.32 16 37 H 0.18 0.33 8.02 -52.49 -0.42 -0.09 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.19 1.61 7.52 -52.48 -0.39 1.22 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -39.76 358.18 -6.07 -45.83 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -3.85 Total: -5.10 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.62 Total: 2.27 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.03 Total: -37.90 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.36 Total: -24.64 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.76 -6.07 -45.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319591147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.030 kcal (2) G-P(sol) polarization free energy of solvation -39.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds