Wall clock time and date at job start Tue Mar 31 2020 19:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47153 * 60.13497 * 3 2 1 5 5 N 1.46504 * 109.47202 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99670 * 269.99991 * 5 4 3 7 7 C 1.50705 * 109.46763 * 269.99594 * 6 5 4 8 8 H 1.07994 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99868 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99862 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47137 * 90.00195 * 11 9 7 13 13 H 1.48507 * 109.47005 * 209.99913 * 11 9 7 14 14 H 1.48500 * 109.47390 * 330.00162 * 11 9 7 15 15 C 1.34768 * 120.00349 * 89.99746 * 5 4 3 16 16 O 1.21279 * 120.00243 * 180.02562 * 15 5 4 17 17 C 1.50707 * 119.99969 * 0.02562 * 15 5 4 18 18 N 1.46499 * 109.47166 * 179.97438 * 17 15 5 19 19 C 1.35605 * 119.26461 * 90.00341 * 18 17 15 20 20 C 1.35092 * 120.69955 * 179.71991 * 19 18 17 21 21 C 1.41482 * 119.24492 * 0.02562 * 20 19 18 22 22 O 1.22246 * 120.67990 * 180.02562 * 21 20 19 23 23 C 1.41486 * 118.63755 * 359.97438 * 21 20 19 24 24 N 1.48010 * 120.37301 * 179.97438 * 23 21 20 25 25 O 1.21795 * 119.99897 * 180.02562 * 24 23 21 26 26 O 1.21797 * 120.00223 * 359.97438 * 24 23 21 27 27 C 1.35085 * 119.24778 * 0.02562 * 23 21 20 28 28 H 1.08998 * 109.47908 * 300.13149 * 3 2 1 29 29 H 1.09005 * 109.46985 * 180.12837 * 3 2 1 30 30 H 1.09001 * 109.47087 * 59.99620 * 4 3 2 31 31 H 1.08997 * 109.46924 * 299.99393 * 4 3 2 32 32 H 1.09001 * 109.47191 * 29.99709 * 6 5 4 33 33 H 1.09002 * 109.47069 * 150.00191 * 6 5 4 34 34 H 0.97002 * 119.99660 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46874 * 59.99795 * 17 15 5 36 36 H 1.09000 * 109.46706 * 300.00404 * 17 15 5 37 37 H 1.07999 * 119.65027 * 359.73953 * 19 18 17 38 38 H 1.07995 * 120.37318 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.65257 * 180.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1183 -0.7174 -1.2509 5 7 4.5833 -0.7162 -1.2513 6 6 5.3147 0.3846 -1.8834 7 6 5.5659 0.0542 -3.3322 8 1 5.2154 -0.8818 -3.7412 9 6 6.2432 0.9470 -4.1354 10 7 6.4619 0.6590 -5.3998 11 14 6.8501 2.5657 -3.4277 12 1 8.2237 2.3878 -2.8921 13 1 6.8649 3.5981 -4.4951 14 1 5.9443 2.9981 -2.3333 15 6 5.2582 -1.7277 -0.6701 16 8 6.4710 -1.7264 -0.6699 17 6 4.5058 -2.8603 -0.0202 18 7 5.4587 -3.8253 0.5338 19 6 5.8896 -3.6732 1.8105 20 6 6.7638 -4.5491 2.3524 21 6 7.2295 -5.6332 1.5718 22 8 8.0204 -6.4416 2.0359 23 6 6.7603 -5.7632 0.2433 24 7 7.2228 -6.8825 -0.6076 25 8 6.8148 -6.9875 -1.7504 26 8 8.0120 -7.6979 -0.1653 27 6 5.8863 -4.8536 -0.2399 28 1 2.9716 -0.5150 0.8887 29 1 2.9708 1.0285 0.0023 30 1 2.7547 -0.2017 -2.1397 31 1 2.7555 -1.7452 -1.2533 32 1 4.7249 1.2987 -1.8161 33 1 6.2672 0.5283 -1.3732 34 1 6.9381 1.2873 -5.9650 35 1 3.8797 -3.3541 -0.7634 36 1 3.8786 -2.4678 0.7802 37 1 5.5299 -2.8431 2.4005 38 1 7.1031 -4.4231 3.3699 39 1 5.5236 -4.9467 -1.2529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319591147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:45 Heat of formation + Delta-G solvation = -19.439461 kcal Electronic energy + Delta-G solvation = -28138.857974 eV Core-core repulsion = 23857.613754 eV Total energy + Delta-G solvation = -4281.244219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36603 -42.32117 -40.74116 -39.26578 -37.95669 -37.45499 -36.75849 -34.87955 -34.25531 -33.49206 -32.31423 -30.55512 -28.75397 -27.65211 -25.22047 -24.86032 -24.49600 -23.77321 -20.88877 -20.15627 -19.83494 -19.18423 -18.68339 -18.49605 -18.43179 -18.36129 -18.11207 -17.55649 -16.70822 -16.39806 -16.11715 -15.73447 -15.63801 -15.60608 -15.06574 -14.62372 -14.58927 -14.44562 -14.07362 -13.85290 -13.70062 -13.49683 -13.43606 -13.25553 -12.93999 -12.66375 -12.64188 -12.41842 -12.38495 -12.22577 -11.97739 -11.80443 -11.68350 -11.36600 -10.91098 -10.89429 -10.77050 -9.61993 -9.53020 -8.27484 -6.32308 -1.14177 -0.06511 0.26309 0.29761 1.18348 1.38752 1.43061 1.49423 1.57504 1.82316 1.97296 2.16283 2.33384 2.36329 2.95634 3.06649 3.13888 3.19111 3.34116 3.55384 3.67006 3.91379 4.02308 4.15797 4.20759 4.23192 4.46250 4.66336 4.86922 4.89370 4.92875 5.02564 5.13718 5.18518 5.29976 5.40406 5.51145 5.57091 6.25190 6.55733 6.56591 6.61351 6.73990 6.75413 7.20183 7.35008 8.88900 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.003668 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.597706 B = 7631.931853 C = 9317.808755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.244 3.756 3 C -0.039 4.039 4 C 0.101 3.899 5 N -0.581 5.581 6 C 0.222 3.778 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.937 3.063 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.218 1.218 15 C 0.484 3.516 16 O -0.577 6.577 17 C 0.063 3.937 18 N -0.425 5.425 19 C 0.168 3.832 20 C -0.263 4.263 21 C 0.386 3.614 22 O -0.540 6.540 23 C -0.255 4.255 24 N 0.060 4.940 25 O -0.187 6.187 26 O -0.209 6.209 27 C 0.278 3.722 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.173 0.827 36 H 0.208 0.792 37 H 0.247 0.753 38 H 0.188 0.812 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 0.483 18.237 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.023 4.023 5 N -0.311 5.311 6 C 0.100 3.900 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.761 3.239 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.141 1.141 15 C 0.271 3.729 16 O -0.456 6.456 17 C -0.059 4.059 18 N -0.107 5.107 19 C 0.046 3.954 20 C -0.285 4.285 21 C 0.278 3.722 22 O -0.427 6.427 23 C -0.350 4.350 24 N 0.566 4.434 25 O -0.398 6.398 26 O -0.413 6.413 27 C 0.138 3.862 28 H 0.175 0.825 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.190 0.810 36 H 0.225 0.775 37 H 0.263 0.737 38 H 0.205 0.795 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.423 0.817 18.715 23.045 hybrid contribution 1.654 0.151 -1.356 2.144 sum -11.768 0.969 17.359 20.994 Atomic orbital electron populations 1.81341 1.15193 1.10835 1.10403 1.29312 0.95152 0.91402 0.91481 1.19947 0.79417 1.06801 1.01797 1.21761 0.77931 1.04181 0.98425 1.47756 1.07098 1.22437 1.53766 1.19434 0.93384 0.86774 0.90440 1.21657 1.35990 1.04088 0.95315 0.94626 1.25837 0.95808 1.02506 0.94869 1.70060 1.43048 1.38285 1.07677 0.85881 0.79704 0.78930 0.79373 1.21028 1.21779 1.14057 1.21280 0.87985 0.84167 0.79499 1.90845 1.16247 1.77936 1.60609 1.23100 0.89478 0.87707 1.05659 1.43319 1.36346 1.19989 1.11084 1.23026 0.91346 0.98514 0.82547 1.22502 1.04403 0.97284 1.04328 1.17602 0.81990 0.87366 0.85286 1.90919 1.33181 1.44286 1.74308 1.22528 1.16162 0.98326 0.97937 1.43199 0.98601 1.01177 1.00461 1.94454 1.60367 1.81196 1.03748 1.94610 1.30908 1.37951 1.77844 1.21926 0.85172 0.81983 0.97135 0.82455 0.85719 0.89972 0.86019 0.91832 0.95486 0.92754 0.81000 0.77542 0.73726 0.79466 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -9.07 18.54 20.00 0.37 -8.70 16 2 C 0.24 2.25 15.43 89.44 1.38 3.63 16 3 C -0.04 -0.05 6.03 28.79 0.17 0.12 16 4 C 0.10 0.83 5.17 86.38 0.45 1.27 16 5 N -0.58 -11.00 2.46 -826.12 -2.03 -13.03 16 6 C 0.22 7.20 4.23 85.63 0.36 7.56 16 7 C -0.53 -25.08 9.94 25.60 0.25 -24.82 16 8 H 0.04 1.91 8.06 -2.91 -0.02 1.89 16 9 C 0.01 0.39 5.47 84.66 0.46 0.85 16 10 N -0.95 -55.29 13.96 21.45 0.30 -54.99 16 11 Si 0.94 38.08 27.47 68.60 1.88 39.97 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.22 -7.13 6.54 99.48 0.65 -6.48 16 15 C 0.48 8.38 7.74 87.66 0.68 9.06 16 16 O -0.58 -17.92 16.01 -3.03 -0.05 -17.96 16 17 C 0.06 0.10 4.59 85.64 0.39 0.49 16 18 N -0.43 -3.63 2.09 -529.46 -1.11 -4.74 16 19 C 0.17 1.01 10.25 83.39 0.85 1.86 16 20 C -0.26 -4.07 10.01 22.34 0.22 -3.85 16 21 C 0.39 11.29 6.76 23.87 0.16 11.45 16 22 O -0.54 -21.50 16.15 14.32 0.23 -21.27 16 23 C -0.26 -7.17 6.86 36.45 0.25 -6.92 16 24 N 0.06 2.18 4.45 -46.29 -0.21 1.97 16 25 O -0.19 -6.48 18.43 18.89 0.35 -6.14 16 26 O -0.21 -8.89 17.51 25.41 0.44 -8.45 16 27 C 0.28 4.75 9.79 83.38 0.82 5.57 16 28 H 0.16 -1.32 7.22 -2.39 -0.02 -1.34 16 29 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.12 0.02 6.44 -2.39 -0.02 0.01 16 32 H 0.06 1.77 7.13 -2.39 -0.02 1.76 16 33 H 0.03 0.99 6.85 -2.39 -0.02 0.97 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.17 -0.71 7.25 -2.39 -0.02 -0.73 16 36 H 0.21 -2.46 7.04 -2.39 -0.02 -2.48 16 37 H 0.25 -1.67 8.02 -2.91 -0.02 -1.70 16 38 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.21 2.78 7.52 -2.91 -0.02 2.76 16 Total: -1.00 -105.61 358.18 7.71 -97.90 By element: Atomic # 1 Polarization: -11.90 SS G_CDS: 1.06 Total: -10.84 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.46 Total: 6.28 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.67 Total: -79.48 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: 0.98 Total: -53.82 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.88 Total: 39.97 kcal Total: -105.61 7.71 -97.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319591147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.459 kcal (2) G-P(sol) polarization free energy of solvation -105.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds