Wall clock time and date at job start Tue Mar 31 2020 19:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47268 * 269.99546 * 3 2 1 5 5 H 1.48507 * 109.47527 * 29.99753 * 3 2 1 6 6 H 1.48503 * 109.47499 * 149.99787 * 3 2 1 7 7 C 1.37873 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00510 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.34769 * 119.99972 * 269.99679 * 10 9 7 12 12 O 1.21290 * 120.00316 * 184.73704 * 11 10 9 13 13 C 1.50697 * 120.00163 * 4.74169 * 11 10 9 14 14 N 1.46501 * 109.47346 * 179.97438 * 13 11 10 15 15 C 1.33872 * 122.76507 * 269.70789 * 14 13 11 16 16 O 1.21229 * 125.39709 * 359.97438 * 15 14 13 17 17 C 1.51317 * 109.20778 * 179.83988 * 15 14 13 18 18 C 1.54233 * 103.55432 * 0.39341 * 17 15 14 19 19 C 1.33885 * 122.75915 * 90.00061 * 14 13 11 20 20 O 1.21225 * 125.39454 * 359.97438 * 19 14 13 21 21 C 1.40028 * 119.99862 * 90.00008 * 10 9 7 22 22 C 1.38857 * 120.04467 * 247.63939 * 21 10 9 23 23 C 1.38108 * 119.95574 * 179.74314 * 22 21 10 24 24 C 1.38479 * 120.04353 * 0.51059 * 23 22 21 25 25 F 1.35108 * 119.95400 * 179.74063 * 24 23 22 26 26 C 1.38469 * 120.09331 * 359.76865 * 24 23 22 27 27 C 1.38115 * 120.04255 * 359.97322 * 26 24 23 28 28 H 0.97001 * 119.99261 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47276 * 59.99433 * 9 7 2 30 30 H 1.08999 * 109.46891 * 299.99678 * 9 7 2 31 31 H 1.08994 * 109.47229 * 300.00078 * 13 11 10 32 32 H 1.09003 * 109.46982 * 60.00014 * 13 11 10 33 33 H 1.09000 * 110.80167 * 241.78421 * 17 15 14 34 34 H 1.09003 * 110.54575 * 118.87581 * 17 15 14 35 35 H 1.08999 * 110.60494 * 241.26143 * 18 17 15 36 36 H 1.08993 * 110.60853 * 118.29206 * 18 17 15 37 37 H 1.08000 * 120.02178 * 359.97438 * 22 21 10 38 38 H 1.07997 * 119.97901 * 180.22697 * 23 22 21 39 39 H 1.07996 * 119.98374 * 179.97438 * 26 24 23 40 40 H 1.08000 * 120.02310 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6407 -4.1250 -1.1666 12 8 3.3609 -5.1009 -1.1685 13 6 2.2356 -3.4852 -2.4695 14 7 2.8373 -4.2222 -3.5834 15 6 4.0372 -3.9151 -4.0913 16 8 4.7538 -3.0165 -3.7058 17 6 4.3588 -4.8693 -5.2208 18 6 3.1190 -5.7845 -5.2849 19 6 2.2298 -5.2549 -4.1810 20 8 1.1403 -5.6960 -3.8844 21 6 2.6578 -4.1449 1.2132 22 6 3.9860 -3.9878 1.5867 23 6 4.4315 -4.5088 2.7856 24 6 3.5571 -5.1967 3.6102 25 9 3.9961 -5.7102 4.7803 26 6 2.2336 -5.3595 3.2370 27 6 1.7829 -4.8354 2.0413 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 1.1499 -3.5073 -2.5630 32 1 2.5810 -2.4515 -2.4895 33 1 5.2530 -5.4500 -4.9943 34 1 4.4829 -4.3255 -6.1574 35 1 3.3965 -6.8204 -5.0900 36 1 2.6250 -5.6940 -6.2521 37 1 4.6693 -3.4553 0.9418 38 1 5.4635 -4.3837 3.0782 39 1 1.5533 -5.8966 3.8813 40 1 0.7507 -4.9629 1.7504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521178074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:54 Heat of formation + Delta-G solvation = -107.130240 kcal Electronic energy + Delta-G solvation = -28846.121307 eV Core-core repulsion = 24541.154569 eV Total energy + Delta-G solvation = -4304.966738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.66217 -41.84240 -39.90115 -38.45054 -37.92283 -35.72385 -35.14756 -33.40483 -32.72667 -30.90551 -29.74810 -27.70757 -26.92550 -26.19668 -23.40787 -22.65642 -22.45600 -22.33126 -20.13130 -18.82125 -17.60850 -17.36435 -17.07201 -16.84966 -16.50916 -16.34924 -15.94646 -15.84808 -15.33170 -14.67377 -14.57166 -14.38542 -14.16376 -14.13109 -13.90154 -13.81357 -13.31703 -13.18405 -13.05767 -12.80611 -12.55021 -12.37167 -11.96193 -11.84880 -11.61356 -11.49112 -11.16204 -10.89540 -10.85849 -10.60658 -10.38504 -10.14786 -9.97601 -9.96299 -9.23529 -8.84772 -8.68588 -8.64848 -7.80834 -6.30398 -4.39086 1.37798 1.51325 1.59168 2.45319 2.80015 2.98605 3.18476 3.25978 3.30307 3.61522 3.86571 4.03139 4.17848 4.25719 4.35780 4.50135 4.71217 4.99999 5.02634 5.04845 5.09914 5.26862 5.38062 5.44836 5.45603 5.50518 5.51837 5.64858 5.74955 5.82202 6.13280 6.34732 6.41933 6.57579 6.70751 6.89313 6.94486 7.04237 7.38434 7.39228 7.63500 7.81625 7.85936 7.94064 8.55626 8.72013 9.29899 10.76458 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.007570 B = 0.005290 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.925214 B = 5291.679122 C = 7674.068768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.235 3.765 10 N -0.556 5.556 11 C 0.515 3.485 12 O -0.551 6.551 13 C 0.086 3.914 14 N -0.557 5.557 15 C 0.528 3.472 16 O -0.476 6.476 17 C -0.154 4.154 18 C -0.154 4.154 19 C 0.530 3.470 20 O -0.483 6.483 21 C 0.166 3.834 22 C -0.078 4.078 23 C -0.144 4.144 24 C 0.081 3.919 25 F -0.146 7.146 26 C -0.144 4.144 27 C -0.094 4.094 28 H 0.268 0.732 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -9.692 -6.585 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.283 5.283 11 C 0.303 3.697 12 O -0.430 6.430 13 C -0.038 4.038 14 N -0.300 5.300 15 C 0.317 3.683 16 O -0.347 6.347 17 C -0.194 4.194 18 C -0.193 4.193 19 C 0.319 3.681 20 O -0.354 6.354 21 C 0.075 3.925 22 C -0.097 4.097 23 C -0.163 4.163 24 C 0.062 3.938 25 F -0.125 7.125 26 C -0.163 4.163 27 C -0.114 4.114 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.067 -9.799 -6.183 12.646 hybrid contribution 0.350 1.121 0.427 1.249 sum 5.417 -8.679 -5.755 11.738 Atomic orbital electron populations 1.69916 1.06018 1.27644 1.48959 1.24916 0.94872 0.99377 0.94317 0.86479 0.79915 0.82622 0.78475 1.20280 1.20947 1.19635 1.21418 0.93762 0.90075 1.53093 0.91745 1.19691 0.87108 0.82044 0.99436 1.45893 1.45548 1.34798 1.02109 1.20585 0.80100 0.83438 0.85609 1.90651 1.38169 1.26551 1.87596 1.21677 1.01289 0.97967 0.82879 1.46389 1.20222 1.31725 1.31643 1.20768 0.79830 0.84266 0.83440 1.90799 1.50696 1.30503 1.62681 1.22438 1.00236 0.97539 0.99160 1.22435 0.95190 1.02215 0.99508 1.20775 0.86023 0.78450 0.82887 1.90769 1.19626 1.59001 1.66017 1.17578 0.92461 0.94976 0.87510 1.21110 0.95573 0.97763 0.95269 1.20925 0.99996 1.00485 0.94912 1.17629 0.93340 0.99595 0.83242 1.91458 1.90113 1.85263 1.45667 1.20886 0.94193 1.03226 0.98036 1.21077 1.00414 0.96080 0.93798 0.92279 0.93878 0.93723 0.85785 0.84337 0.86218 0.86299 0.86236 0.86278 0.85132 0.84854 0.84756 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -13.61 9.16 -34.44 -0.32 -13.93 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.33 4.88 -5.19 -0.03 5.31 16 10 N -0.56 -11.56 2.51 -114.72 -0.29 -11.85 16 11 C 0.51 10.59 7.59 -10.99 -0.08 10.50 16 12 O -0.55 -12.18 16.18 5.55 0.09 -12.09 16 13 C 0.09 1.56 4.70 -5.19 -0.02 1.53 16 14 N -0.56 -8.71 2.04 -116.63 -0.24 -8.95 16 15 C 0.53 7.61 8.08 -11.09 -0.09 7.52 16 16 O -0.48 -8.64 17.47 5.60 0.10 -8.54 16 17 C -0.15 -1.25 7.03 -26.94 -0.19 -1.44 16 18 C -0.15 -1.23 7.03 -26.94 -0.19 -1.42 16 19 C 0.53 7.43 8.08 -11.08 -0.09 7.34 16 20 O -0.48 -8.36 17.48 5.60 0.10 -8.26 16 21 C 0.17 3.26 4.76 -83.66 -0.40 2.87 16 22 C -0.08 -1.43 9.53 -39.40 -0.38 -1.81 16 23 C -0.14 -2.31 10.02 -39.54 -0.40 -2.71 16 24 C 0.08 1.29 7.30 -39.41 -0.29 1.00 16 25 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 26 C -0.14 -2.21 10.02 -39.54 -0.40 -2.61 16 27 C -0.09 -1.62 9.69 -39.40 -0.38 -2.01 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.04 0.98 6.47 -51.93 -0.34 0.64 16 30 H 0.04 1.07 7.86 -51.93 -0.41 0.66 16 31 H 0.12 2.16 6.95 -51.93 -0.36 1.80 16 32 H 0.14 2.63 7.59 -51.93 -0.39 2.24 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -32.39 360.20 -6.82 -39.22 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.43 Total: 3.05 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -3.34 Total: 11.82 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.21 Total: -43.62 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: 0.29 Total: -28.89 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.39 -6.82 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521178074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.914 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds