Wall clock time and date at job start Tue Mar 31 2020 19:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47268 * 269.99546 * 3 2 1 5 5 H 1.48507 * 109.47527 * 29.99753 * 3 2 1 6 6 H 1.48503 * 109.47499 * 149.99787 * 3 2 1 7 7 C 1.37873 * 119.99446 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00510 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47351 * 179.97438 * 9 7 2 11 11 C 1.34769 * 119.99972 * 269.99679 * 10 9 7 12 12 O 1.21290 * 120.00316 * 184.73704 * 11 10 9 13 13 C 1.50697 * 120.00163 * 4.74169 * 11 10 9 14 14 N 1.46501 * 109.47346 * 179.97438 * 13 11 10 15 15 C 1.33872 * 122.76507 * 269.70789 * 14 13 11 16 16 O 1.21229 * 125.39709 * 359.97438 * 15 14 13 17 17 C 1.51317 * 109.20778 * 179.83988 * 15 14 13 18 18 C 1.54233 * 103.55432 * 0.39341 * 17 15 14 19 19 C 1.33885 * 122.75915 * 90.00061 * 14 13 11 20 20 O 1.21225 * 125.39454 * 359.97438 * 19 14 13 21 21 C 1.40028 * 119.99862 * 90.00008 * 10 9 7 22 22 C 1.38857 * 120.04467 * 247.63939 * 21 10 9 23 23 C 1.38108 * 119.95574 * 179.74314 * 22 21 10 24 24 C 1.38479 * 120.04353 * 0.51059 * 23 22 21 25 25 F 1.35108 * 119.95400 * 179.74063 * 24 23 22 26 26 C 1.38469 * 120.09331 * 359.76865 * 24 23 22 27 27 C 1.38115 * 120.04255 * 359.97322 * 26 24 23 28 28 H 0.97001 * 119.99261 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47276 * 59.99433 * 9 7 2 30 30 H 1.08999 * 109.46891 * 299.99678 * 9 7 2 31 31 H 1.08994 * 109.47229 * 300.00078 * 13 11 10 32 32 H 1.09003 * 109.46982 * 60.00014 * 13 11 10 33 33 H 1.09000 * 110.80167 * 241.78421 * 17 15 14 34 34 H 1.09003 * 110.54575 * 118.87581 * 17 15 14 35 35 H 1.08999 * 110.60494 * 241.26143 * 18 17 15 36 36 H 1.08993 * 110.60853 * 118.29206 * 18 17 15 37 37 H 1.08000 * 120.02178 * 359.97438 * 22 21 10 38 38 H 1.07997 * 119.97901 * 180.22697 * 23 22 21 39 39 H 1.07996 * 119.98374 * 179.97438 * 26 24 23 40 40 H 1.08000 * 120.02310 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6407 -4.1250 -1.1666 12 8 3.3609 -5.1009 -1.1685 13 6 2.2356 -3.4852 -2.4695 14 7 2.8373 -4.2222 -3.5834 15 6 4.0372 -3.9151 -4.0913 16 8 4.7538 -3.0165 -3.7058 17 6 4.3588 -4.8693 -5.2208 18 6 3.1190 -5.7845 -5.2849 19 6 2.2298 -5.2549 -4.1810 20 8 1.1403 -5.6960 -3.8844 21 6 2.6578 -4.1449 1.2132 22 6 3.9860 -3.9878 1.5867 23 6 4.4315 -4.5088 2.7856 24 6 3.5571 -5.1967 3.6102 25 9 3.9961 -5.7102 4.7803 26 6 2.2336 -5.3595 3.2370 27 6 1.7829 -4.8354 2.0413 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 1.1499 -3.5073 -2.5630 32 1 2.5810 -2.4515 -2.4895 33 1 5.2530 -5.4500 -4.9943 34 1 4.4829 -4.3255 -6.1574 35 1 3.3965 -6.8204 -5.0900 36 1 2.6250 -5.6940 -6.2521 37 1 4.6693 -3.4553 0.9418 38 1 5.4635 -4.3837 3.0782 39 1 1.5533 -5.8966 3.8813 40 1 0.7507 -4.9629 1.7504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521178074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:53 Heat of formation + Delta-G solvation = -126.453424 kcal Electronic energy + Delta-G solvation = -28846.959223 eV Core-core repulsion = 24541.154569 eV Total energy + Delta-G solvation = -4305.804655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.92742 -42.99103 -41.40869 -39.65195 -39.37121 -36.96463 -36.80972 -34.67630 -34.39145 -32.24394 -31.17429 -29.36240 -28.45190 -27.10754 -25.20237 -24.09294 -23.86217 -23.31099 -21.42572 -20.14908 -18.99971 -18.83459 -18.64950 -18.30414 -17.83698 -17.53546 -17.40420 -17.23552 -16.60309 -16.36679 -15.95561 -15.83952 -15.48748 -15.28221 -14.99582 -14.94462 -14.62290 -14.51308 -14.35571 -14.29490 -13.93063 -13.59537 -13.50772 -13.39566 -13.25356 -12.96036 -12.68929 -12.24593 -12.22867 -12.08134 -11.82323 -11.75803 -11.62440 -11.11181 -10.79220 -10.62174 -10.23439 -10.17835 -9.34990 -8.28688 -6.43252 -0.00905 0.17472 0.50609 1.26394 1.35610 1.37438 1.40930 1.49673 1.71030 2.11255 2.36130 2.49339 3.02623 3.18140 3.22057 3.26111 3.46540 3.66327 3.70712 3.83688 3.93976 4.14713 4.16382 4.22217 4.26939 4.32875 4.36590 4.75622 4.82015 4.84385 4.92541 4.92741 5.00618 5.03658 5.05762 5.33936 5.51900 5.63147 5.79774 5.88252 5.91846 6.22266 6.32342 6.64338 6.69810 6.98396 7.28751 8.77385 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.007570 B = 0.005290 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.925214 B = 5291.679122 C = 7674.068768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.030 3.970 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.251 3.749 10 N -0.556 5.556 11 C 0.510 3.490 12 O -0.569 6.569 13 C 0.089 3.911 14 N -0.568 5.568 15 C 0.515 3.485 16 O -0.526 6.526 17 C -0.134 4.134 18 C -0.134 4.134 19 C 0.518 3.482 20 O -0.525 6.525 21 C 0.129 3.871 22 C -0.095 4.095 23 C -0.138 4.138 24 C 0.084 3.916 25 F -0.138 7.138 26 C -0.132 4.132 27 C -0.102 4.102 28 H 0.271 0.729 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.159 0.841 37 H 0.117 0.883 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -10.906 -7.389 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.132 3.868 10 N -0.283 5.283 11 C 0.299 3.701 12 O -0.450 6.450 13 C -0.037 4.037 14 N -0.310 5.310 15 C 0.307 3.693 16 O -0.400 6.400 17 C -0.173 4.173 18 C -0.172 4.172 19 C 0.310 3.690 20 O -0.400 6.400 21 C 0.038 3.962 22 C -0.115 4.115 23 C -0.157 4.157 24 C 0.065 3.935 25 F -0.117 7.117 26 C -0.151 4.151 27 C -0.121 4.121 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.135 0.865 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.111 -11.036 -7.000 14.427 hybrid contribution 0.039 1.440 0.761 1.629 sum 6.150 -9.596 -6.239 12.994 Atomic orbital electron populations 1.69987 1.07010 1.28445 1.49754 1.25552 0.95558 1.02029 0.94061 0.85636 0.78637 0.79411 0.78570 1.19762 1.20237 1.19922 1.21543 0.93232 0.91301 1.52802 0.93035 1.19339 0.87019 0.82063 0.98375 1.45810 1.45169 1.34304 1.03025 1.20969 0.79703 0.83222 0.86211 1.90605 1.39036 1.27388 1.87928 1.21417 1.01381 0.97505 0.83348 1.46772 1.21122 1.32216 1.30898 1.22039 0.78604 0.84325 0.84296 1.90766 1.51793 1.32904 1.64542 1.22606 1.00980 0.96103 0.97625 1.22608 0.93433 1.02808 0.98388 1.21996 0.86010 0.77401 0.83597 1.90742 1.21705 1.59993 1.67530 1.17983 0.93620 0.96814 0.87762 1.21091 0.95126 0.98901 0.96364 1.21132 1.01370 0.99405 0.93757 1.17688 0.93482 0.99090 0.83273 1.91484 1.90047 1.85041 1.45129 1.21194 0.94573 1.02012 0.97315 1.21224 1.00540 0.96108 0.94261 0.92029 0.94355 0.95057 0.85935 0.85983 0.83840 0.82501 0.83783 0.82369 0.86464 0.82300 0.81421 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.38 13.29 21.45 0.28 -49.10 16 2 C 0.03 1.54 5.46 84.65 0.46 2.00 16 3 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -28.56 9.16 25.60 0.23 -28.33 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.25 11.96 4.88 85.63 0.42 12.38 16 10 N -0.56 -24.32 2.51 -635.25 -1.59 -25.91 16 11 C 0.51 22.10 7.59 87.66 0.67 22.77 16 12 O -0.57 -26.12 16.18 -3.06 -0.05 -26.16 16 13 C 0.09 3.43 4.70 85.63 0.40 3.83 16 14 N -0.57 -18.05 2.04 -760.73 -1.55 -19.61 16 15 C 0.52 14.64 8.08 87.99 0.71 15.35 16 16 O -0.53 -19.62 17.47 -2.87 -0.05 -19.67 16 17 C -0.13 -1.69 7.03 30.46 0.21 -1.47 16 18 C -0.13 -1.61 7.03 30.46 0.21 -1.40 16 19 C 0.52 14.15 8.08 87.99 0.71 14.86 16 20 O -0.53 -18.40 17.48 -2.86 -0.05 -18.45 16 21 C 0.13 5.22 4.76 38.13 0.18 5.41 16 22 C -0.10 -3.61 9.53 22.39 0.21 -3.40 16 23 C -0.14 -4.31 10.02 22.30 0.22 -4.09 16 24 C 0.08 2.52 7.30 22.38 0.16 2.68 16 25 F -0.14 -3.88 17.27 44.97 0.78 -3.10 16 26 C -0.13 -3.83 10.02 22.30 0.22 -3.61 16 27 C -0.10 -3.52 9.69 22.39 0.22 -3.30 16 28 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.04 1.85 6.47 -2.39 -0.02 1.83 16 30 H 0.03 1.57 7.86 -2.39 -0.02 1.55 16 31 H 0.12 4.63 6.95 -2.39 -0.02 4.62 16 32 H 0.12 5.04 7.59 -2.39 -0.02 5.02 16 33 H 0.14 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -74.29 360.20 6.13 -68.16 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.09 Total: 16.14 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 5.25 Total: 33.67 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -2.86 Total: -94.61 kcal Atomic # 8 Polarization: -64.14 SS G_CDS: -0.15 Total: -64.29 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.10 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -74.29 6.13 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521178074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.293 kcal (2) G-P(sol) polarization free energy of solvation -74.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds